| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS17380 | | ribulose-phosphate 3-epimerase | 1.0 | BPHYT_RS33865 | | tryptophan synthase alpha chain | 0.72 | 10 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.97 | H281DRAFT_05717 | | ribulose-5-phosphate 3-epimerase | 0.93 | H281DRAFT_06065 | | tryptophan synthase, alpha chain | 0.59 | 3 |
| Paraburkholderia graminis OAS925 | 0.96 | ABIE53_003638 | | ribulose-phosphate 3-epimerase | 0.97 | ABIE53_004811 | | tryptophan synthase alpha chain | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.91 | QEN71_RS27540 | | ribulose-phosphate 3-epimerase | 0.86 | QEN71_RS17655 | | tryptophan synthase subunit alpha | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.80 | RR42_RS18285 | | ribulose-phosphate 3-epimerase | 0.73 | RR42_RS14350 | | tryptophan synthase alpha chain | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.77 | RALBFv3_RS06475 | | ribulose-phosphate 3-epimerase | 0.71 | RALBFv3_RS02575 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia solanacearum UW163 | 0.77 | UW163_RS07150 | | ribulose-phosphate 3-epimerase | 0.71 | UW163_RS11150 | | tryptophan synthase subunit alpha | — | — |
| Herbaspirillum seropedicae SmR1 | 0.77 | HSERO_RS19425 | | ribulose-phosphate 3-epimerase | 0.62 | HSERO_RS16470 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia sp. UNC404CL21Col | 0.77 | ABZR87_RS02130 | | ribulose-phosphate 3-epimerase | 0.72 | ABZR87_RS14490 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia solanacearum GMI1000 | 0.77 | RS_RS14420 | | ribulose-phosphate 3-epimerase | 0.72 | RS_RS09955 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia solanacearum PSI07 | 0.77 | RPSI07_RS10765 | | ribulose-phosphate 3-epimerase | 0.72 | RPSI07_RS14740 | | tryptophan synthase subunit alpha | — | — |
| Dechlorosoma suillum PS | 0.75 | Dsui_0221 | | ribulose-phosphate 3-epimerase | 0.61 | Dsui_3191 | | tryptophan synthase, alpha subunit | — | — |
| Klebsiella michiganensis M5al | 0.74 | BWI76_RS26070 | | ribulose-phosphate 3-epimerase | 0.29 | BWI76_RS11840 | | tryptophan synthase subunit alpha | — | — |
| Serratia liquefaciens MT49 | 0.74 | IAI46_23685 | | ribulose-phosphate 3-epimerase | 0.30 | IAI46_14045 | | tryptophan synthase subunit alpha | low | > 86 |
| Dickeya dianthicola ME23 | 0.73 | DZA65_RS20745 | | ribulose-phosphate 3-epimerase | 0.31 | DZA65_RS10940 | | tryptophan synthase subunit alpha | — | — |
| Dickeya dianthicola 67-19 | 0.73 | HGI48_RS19660 | | ribulose-phosphate 3-epimerase | 0.31 | HGI48_RS10460 | | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_17130 | dam | adenine-specific DNA-methyltransferase | 0.28 | OKFHMN_02675 | trpA | tryptophan synthase subunit alpha | — | — |
| Enterobacter asburiae PDN3 | 0.73 | EX28DRAFT_4156 | | ribulose-phosphate 3-epimerase | 0.29 | EX28DRAFT_0932 | | tryptophan synthase, alpha chain (EC 4.2.1.20) | low | > 76 |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_11010 | dam | adenine-specific DNA-methyltransferase | 0.28 | KEDOAH_26075 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_15950 | rpe | ribulose-phosphate 3-epimerase | 0.27 | HEPCGN_25515 | trpA | tryptophan synthase subunit alpha | low | > 87 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_02600 | dam | adenine-specific DNA-methyltransferase | 0.28 | BNILDI_18480 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECRC101 | 0.73 | MCAODC_07660 | dam | adenine-specific DNA-methyltransferase | 0.28 | MCAODC_15590 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_00317 | | Ribulose-phosphate 3-epimerase | 0.28 | OHPLBJKB_02423 | | Tryptophan synthase alpha chain | — | — |
| Escherichia coli BW25113 | 0.73 | b3386 | rpe | ribulose-phosphate 3-epimerase (NCBI) | 0.28 | b1260 | trpA | tryptophan synthase subunit alpha (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_20760 | dam | adenine-specific DNA-methyltransferase | 0.28 | JDDGAC_05220 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_14900 | dam | adenine-specific DNA-methyltransferase | 0.28 | NIAGMN_26845 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia fergusonii Becca | 0.73 | EFB2_00442 | | Ribulose-phosphate 3-epimerase | 0.27 | EFB2_02666 | | Tryptophan synthase alpha chain | — | — |
| Escherichia coli BL21 | 0.73 | ECD_03238 | | D-ribulose-5-phosphate 3-epimerase | 0.28 | ECD_01234 | | tryptophan synthase, alpha subunit | low | > 61 |
| Dickeya dadantii 3937 | 0.73 | DDA3937_RS19530 | | ribulose-phosphate 3-epimerase | 0.31 | DDA3937_RS10460 | | tryptophan synthase subunit alpha | — | — |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_08920 | dam | adenine-specific DNA-methyltransferase | 0.28 | NOLOHH_20335 | trpA | tryptophan synthase subunit alpha | — | — |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS19345 | | ribulose-phosphate 3-epimerase | 0.28 | ECOLIN_RS07595 | | tryptophan synthase subunit alpha | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF633 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.30 | GFF2726 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_04275 | | Ribulose-phosphate 3-epimerase | 0.29 | MPMX20_02514 | | Tryptophan synthase alpha chain | low | > 85 |
| Shewanella amazonensis SB2B | 0.71 | Sama_3362 | | ribulose-phosphate 3-epimerase (RefSeq) | 0.29 | Sama_2134 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.71 | SO0292 | rpe | ribulose-phosphate 3-epimerase (NCBI ptt file) | 0.29 | SO3024 | trpA | tryptophan synthase, alpha subunit (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_3888 | | ribulose-5-phosphate 3-epimerase (RefSeq) | 0.29 | Shewana3_1515 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.71 | HER17_RS01795 | | ribulose-phosphate 3-epimerase | 0.31 | HER17_RS10940 | | tryptophan synthase subunit alpha | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS22850 | rpe | ribulose-phosphate 3-epimerase | 0.27 | LU632_RS12775 | trpA | tryptophan synthase subunit alpha | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_0219 | | ribulose-phosphate 3-epimerase (RefSeq) | 0.27 | Shew_2256 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.70 | IAI47_01910 | | ribulose-phosphate 3-epimerase | 0.29 | IAI47_09165 | | tryptophan synthase subunit alpha | — | — |
| Rahnella sp. WP5 | 0.70 | EX31_RS04705 | | ribulose-phosphate 3-epimerase | 0.29 | EX31_RS09980 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | 0.42 | Psyr_0033 | | tryptophan synthase, alpha chain | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | 0.42 | Psyr_0033 | | tryptophan synthase, alpha chain | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_13285 | | ribulose-phosphate 3-epimerase | 0.29 | CSW01_05925 | | tryptophan synthase subunit alpha | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_3652 | | ribulose-phosphate 3-epimerase | 0.41 | Psest_0062 | | tryptophan synthase, alpha subunit | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS12200 | | ribulose-phosphate 3-epimerase | 0.49 | ABZR86_RS07995 | | tryptophan synthase subunit alpha | 0.66 | 28 |
| Pseudomonas sp. RS175 | 0.69 | PFR28_04049 | | Ribulose-phosphate 3-epimerase | 0.40 | PFR28_04716 | | Tryptophan synthase alpha chain | — | — |
| Pseudomonas fluorescens SBW25 | 0.69 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | 0.40 | PFLU_RS00175 | | tryptophan synthase subunit alpha | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.69 | GFF2197 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.61 | GFF3354 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | low | > 90 |
| Pseudomonas fluorescens SBW25-INTG | 0.69 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | 0.40 | PFLU_RS00175 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas putida KT2440 | 0.69 | PP_0415 | | ribulose-5-phosphate 3-epimerase | 0.42 | PP_0082 | | tryptophan synthase alpha chain | — | — |
| Pseudomonas simiae WCS417 | 0.69 | PS417_25735 | | ribulose-phosphate 3-epimerase | 0.39 | PS417_00180 | | tryptophan synthase subunit alpha | — | — |
| Lysobacter sp. OAE881 | 0.69 | ABIE51_RS04135 | | ribulose-phosphate 3-epimerase | 0.46 | ABIE51_RS08265 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.69 | Pf1N1B4_2543 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.40 | Pf1N1B4_1830 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_4820 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.40 | Pf6N2E2_4047 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.68 | PfGW456L13_1215 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.39 | PfGW456L13_565 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_0267 | | ribulose-phosphate 3-epimerase | 0.24 | B158DRAFT_2430 | | tryptophan synthase, alpha chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_14410 | | ribulose phosphate epimerase | 0.39 | AO356_10910 | | tryptophan synthase subunit alpha | — | — |
| Castellaniella sp019104865 MT123 | 0.68 | ABCV34_RS10270 | | ribulose-phosphate 3-epimerase | 0.54 | ABCV34_RS08430 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_07240 | | ribulose phosphate epimerase | 0.40 | AO353_10705 | | tryptophan synthase subunit alpha | — | — |
| Pseudomonas sp. S08-1 | 0.68 | OH686_15115 | | ribulose-phosphate 3-epimerase | 0.39 | OH686_12430 | | tryptophan synthase, alpha subunit | — | — |
| Marinobacter adhaerens HP15 | 0.66 | HP15_3286 | | ribulose-phosphate 3-epimerase-like protein | 0.57 | HP15_1826 | | tryptophan synthase, alpha subunit | — | — |
| Azospirillum sp. SherDot2 | 0.65 | MPMX19_02946 | | Ribulose-phosphate 3-epimerase | 0.38 | MPMX19_02737 | | Tryptophan synthase alpha chain | low | > 112 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS04905 | | ribulose-phosphate 3-epimerase | 0.58 | ABID97_RS08425 | | tryptophan synthase subunit alpha | — | — |
| Variovorax sp. SCN45 | 0.65 | GFF6246 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.59 | GFF3882 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00441 | | Ribulose-phosphate 3-epimerase | 0.28 | MIT1002_01425 | | Tryptophan synthase alpha chain | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.64 | Xcc-8004.605.1 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.41 | Xcc-8004.1967.1 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Acinetobacter radioresistens SK82 | 0.64 | MPMX26_02569 | | Ribulose-phosphate 3-epimerase | 0.49 | MPMX26_02611 | | Tryptophan synthase alpha chain | — | — |
| Rhodanobacter denitrificans MT42 | 0.64 | LRK55_RS11120 | | ribulose-phosphate 3-epimerase | 0.48 | LRK55_RS01460 | | tryptophan synthase subunit alpha | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.64 | LRK54_RS11390 | | ribulose-phosphate 3-epimerase | 0.48 | LRK54_RS01680 | | tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_12435 | rpe | ribulose-phosphate 3-epimerase | 0.48 | OKGIIK_04850 | trpA | tryptophan synthase subunit alpha | — | — |
| Acidovorax sp. GW101-3H11 | 0.62 | Ac3H11_757 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.58 | Ac3H11_1535 | | Tryptophan synthase alpha chain (EC 4.2.1.20) | — | — |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A2402 | | Ribulose-phosphate 3-epimerase (NCBI) | 0.39 | Rru_A3428 | | Tryptophan synthase (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.52 | Ga0059261_2240 | | ribulose-phosphate 3-epimerase | 0.36 | Ga0059261_0239 | | tryptophan synthase, alpha chain (EC 4.2.1.20) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS13160 | | ribulose-phosphate 3-epimerase | 0.38 | A4249_RS11320 | | tryptophan synthase subunit alpha | — | — |
| Synechococcus elongatus PCC 7942 | 0.51 | Synpcc7942_0604 | rpe | ribulose-phosphate 3-epimerase | 0.38 | Synpcc7942_0411 | trpA | tryptophan synthase subunit alpha | — | — |
| Caulobacter crescentus NA1000 | 0.50 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | 0.36 | CCNA_03657 | | tryptophan synthase alpha chain | — | — |
| Magnetospirillum magneticum AMB-1 | 0.50 | AMB_RS06980 | | ribulose-phosphate 3-epimerase | 0.40 | AMB_RS20300 | | tryptophan synthase subunit alpha | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.50 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | 0.36 | CCNA_03657 | | tryptophan synthase alpha chain | — | — |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS10105 | | ribulose-phosphate 3-epimerase | 0.37 | ABIE40_RS19340 | | tryptophan synthase subunit alpha | — | — |
| Sinorhizobium meliloti 1021 | 0.46 | SMc00511 | | D-ribulose-5-phosphate 3-epimerase | 0.38 | SMc02765 | | tryptophan synthase subunit alpha | low | > 103 |
| Agrobacterium fabrum C58 | 0.46 | Atu1839 | | ribulose-phosphate 3-epimerase | 0.37 | Atu0019 | | tryptophan synthase alpha subunit | — | — |
| Azospirillum brasilense Sp245 | 0.45 | AZOBR_RS06755 | | ribulose-phosphate 3-epimerase | 0.39 | AZOBR_RS00520 | | tryptophan synthase subunit alpha | — | — |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_3006 | | Ribulose-phosphate 3-epimerase (RefSeq) | 0.42 | Dshi_0952 | | tryptophan synthase, alpha subunit (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.44 | DVU2531 | rpe | ribulose-phosphate 3-epimerase (TIGR) | 0.29 | DVU0471 | trpA | tryptophan synthase, alpha subunit (TIGR) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_019755 | | ribulose-phosphate 3-epimerase | 0.38 | TX73_000365 | | tryptophan synthase subunit alpha | — | — |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c04170 | | ribulose-phosphate 3-epimerase Rpe | 0.42 | PGA1_c04930 | | tryptophan synthase alpha chain | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS08990 | | ribulose-phosphate 3-epimerase | 0.30 | CA265_RS05025 | | tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.40 | CA264_21180 | | ribulose-phosphate 3-epimerase | 0.27 | CA264_05085 | | tryptophan synthase subunit alpha | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.39 | Rv1408 | | Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) | 0.27 | Rv1613 | | Probable tryptophan synthase, alpha subunit TrpA | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.39 | DvMF_0977 | | Ribulose-phosphate 3-epimerase (RefSeq) | 0.30 | DvMF_1740 | trpA | tryptophan synthase subunit alpha (RefSeq) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.38 | ABZR88_RS06500 | | ribulose-phosphate 3-epimerase | 0.29 | ABZR88_RS10660 | | tryptophan synthase subunit alpha | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.37 | Echvi_3575 | | ribulose-phosphate 3-epimerase | 0.30 | Echvi_2511 | | tryptophan synthase, alpha subunit | — | — |
| Bacteroides ovatus ATCC 8483 | 0.37 | BACOVA_01203 | | ribulose-phosphate 3-epimerase | 0.26 | BACOVA_03785 | | tryptophan synthase, alpha subunit | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT3946 | | ribulose-phosphate 3-epimerase (NCBI ptt file) | 0.28 | BT0527 | | tryptophan synthase alpha chain (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS00800 | | ribulose-phosphate 3-epimerase | 0.28 | HMPREF1078_RS00120 | | tryptophan synthase subunit alpha | — | — |
| Bifidobacterium breve UCC2003 | 0.36 | BBR_RS15800 | | ribulose-phosphate 3-epimerase | 0.22 | BBR_RS15810 | | tryptophan synthase subunit alpha | — | — |
| Bacteroides stercoris CC31F | 0.36 | HMPREF1181_RS06505 | | ribulose-phosphate 3-epimerase | 0.27 | HMPREF1181_RS15350 | | tryptophan synthase subunit alpha | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.36 | HMPREF1058_RS07710 | | ribulose-phosphate 3-epimerase | 0.26 | HMPREF1058_RS07200 | | tryptophan synthase subunit alpha | — | — |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS00225 | | ribulose-phosphate 3-epimerase | 0.26 | ABI39_RS21075 | | tryptophan synthase subunit alpha | — | — |
| Methanococcus maripaludis S2 | 0.35 | MMP_RS05755 | | ribulose-phosphate 3-epimerase | 0.28 | MMP_RS05185 | | tryptophan synthase subunit alpha | — | — |
| Methanococcus maripaludis JJ | 0.35 | MMJJ_RS08595 | | ribulose-phosphate 3-epimerase | 0.28 | MMJJ_RS09195 | | tryptophan synthase subunit alpha | — | — |
Not shown: 1 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS33865 only