Conservation of cofitness between BPHYT_RS17380 and BPHYT_RS16270 in Burkholderia phytofirmans PsJN

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 1.0 BPHYT_RS16270 phosphoglycerate kinase 0.72 11
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.95 H281DRAFT_04190 phosphoglycerate kinase — —
Paraburkholderia graminis OAS925 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase 0.95 ABIE53_003428 phosphoglycerate kinase low > 113
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase 0.94 QEN71_RS02425 phosphoglycerate kinase — —
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS18285 ribulose-phosphate 3-epimerase 0.80 RR42_RS03200 phosphoglycerate kinase — —
Ralstonia solanacearum UW163 0.77 UW163_RS07150 ribulose-phosphate 3-epimerase 0.85 UW163_RS01435 phosphoglycerate kinase — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS06475 ribulose-phosphate 3-epimerase 0.83 RALBFv3_RS12175 phosphoglycerate kinase — —
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19425 ribulose-phosphate 3-epimerase 0.78 HSERO_RS03345 phosphoglycerate kinase — —
Ralstonia solanacearum PSI07 0.77 RPSI07_RS10765 ribulose-phosphate 3-epimerase 0.82 RPSI07_RS21155 phosphoglycerate kinase — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS02130 ribulose-phosphate 3-epimerase 0.84 ABZR87_RS08065 phosphoglycerate kinase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS14420 ribulose-phosphate 3-epimerase 0.82 RS_RS02860 phosphoglycerate kinase — —
Dechlorosoma suillum PS 0.75 Dsui_0221 ribulose-phosphate 3-epimerase 0.76 Dsui_1557 3-phosphoglycerate kinase — —
Klebsiella michiganensis M5al 0.74 BWI76_RS26070 ribulose-phosphate 3-epimerase 0.59 BWI76_RS23980 phosphoglycerate kinase — —
Serratia liquefaciens MT49 0.74 IAI46_23685 ribulose-phosphate 3-epimerase 0.59 IAI46_21010 phosphoglycerate kinase — —
Dickeya dianthicola ME23 0.73 DZA65_RS20745 ribulose-phosphate 3-epimerase 0.59 DZA65_RS19575 phosphoglycerate kinase — —
Dickeya dianthicola 67-19 0.73 HGI48_RS19660 ribulose-phosphate 3-epimerase 0.59 HGI48_RS18440 phosphoglycerate kinase — —
Escherichia coli ECRC100 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.59 OKFHMN_19390 pgk phosphoglycerate kinase — —
Dickeya dadantii 3937 0.73 DDA3937_RS19530 ribulose-phosphate 3-epimerase 0.59 DDA3937_RS18515 phosphoglycerate kinase — —
Escherichia coli ECRC62 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.59 BNILDI_09840 pgk phosphoglycerate kinase — —
Escherichia coli ECRC99 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.59 KEDOAH_08750 pgk phosphoglycerate kinase — —
Escherichia coli ECOR38 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.59 HEPCGN_18700 pgk phosphoglycerate kinase — —
Escherichia coli BL21 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.59 ECD_02757 phosphoglycerate kinase — —
Escherichia coli ECRC98 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.59 JDDGAC_23020 pgk phosphoglycerate kinase — —
Escherichia coli ECRC101 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.59 MCAODC_09910 pgk phosphoglycerate kinase — —
Escherichia coli ECRC102 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.59 NIAGMN_17155 pgk phosphoglycerate kinase — —
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4156 ribulose-phosphate 3-epimerase 0.59 EX28DRAFT_2972 phosphoglycerate kinase (EC 2.7.2.3) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.59 OHPLBJKB_00790 Phosphoglycerate kinase — —
Escherichia coli ECOR27 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.59 NOLOHH_11300 pgk phosphoglycerate kinase — —
Escherichia fergusonii Becca 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase 0.59 EFB2_00980 Phosphoglycerate kinase — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.59 ECOLIN_RS16260 phosphoglycerate kinase — —
Escherichia coli BW25113 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.59 b2926 pgk phosphoglycerate kinase (NCBI) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.59 GFF3021 Phosphoglycerate kinase (EC 2.7.2.3) — —
Enterobacter sp. TBS_079 0.72 MPMX20_04275 Ribulose-phosphate 3-epimerase 0.59 MPMX20_03778 Phosphoglycerate kinase — —
Shewanella amazonensis SB2B 0.71 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.63 Sama_2757 pgk phosphoglycerate kinase (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.62 SO0932 pgk phosphoglycerate kinase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.71 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.61 Shewana3_3351 pgk phosphoglycerate kinase (RefSeq) — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS01795 ribulose-phosphate 3-epimerase 0.58 HER17_RS02690 phosphoglycerate kinase — —
Erwinia tracheiphila SCR3 0.71 LU632_RS22850 rpe ribulose-phosphate 3-epimerase 0.56 LU632_RS05540 pgk phosphoglycerate kinase — —
Shewanella loihica PV-4 0.70 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.63 Shew_0754 pgk phosphoglycerate kinase (RefSeq) — —
Pantoea sp. MT58 0.70 IAI47_01910 ribulose-phosphate 3-epimerase 0.56 IAI47_03690 phosphoglycerate kinase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.63 Psyr_4790 phosphoglycerate kinase — —
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.63 Psyr_4790 phosphoglycerate kinase — —
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13285 ribulose-phosphate 3-epimerase 0.59 CSW01_02535 phosphoglycerate kinase — —
Rahnella sp. WP5 0.70 EX31_RS04705 ribulose-phosphate 3-epimerase 0.59 EX31_RS21410 phosphoglycerate kinase — —
Pseudomonas stutzeri RCH2 0.69 Psest_3652 ribulose-phosphate 3-epimerase 0.64 Psest_0330 3-phosphoglycerate kinase — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.61 ABZR86_RS18675 phosphoglycerate kinase 0.61 73
Pseudomonas sp. RS175 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase 0.64 PFR28_04186 Phosphoglycerate kinase — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.63 PFLU_RS28085 phosphoglycerate kinase — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.63 PFLU_RS28085 phosphoglycerate kinase — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.62 Pf1N1B4_2399 Phosphoglycerate kinase (EC 2.7.2.3) — —
Lysobacter sp. OAE881 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.60 ABIE51_RS17060 phosphoglycerate kinase — —
Pseudomonas simiae WCS417 0.69 PS417_25735 ribulose-phosphate 3-epimerase 0.62 PS417_26430 phosphoglycerate kinase — —
Pseudomonas putida KT2440 0.69 PP_0415 ribulose-5-phosphate 3-epimerase 0.62 PP_4963 Phosphoglycerate kinase — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10270 ribulose-phosphate 3-epimerase 0.71 ABCV34_RS15460 phosphoglycerate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_14410 ribulose phosphate epimerase 0.62 AO356_13690 phosphoglycerate kinase — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.62 Pf6N2E2_4657 Phosphoglycerate kinase (EC 2.7.2.3) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0267 ribulose-phosphate 3-epimerase 0.62 B158DRAFT_0513 phosphoglycerate kinase (EC 2.7.2.3) — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.62 PfGW456L13_1066 Phosphoglycerate kinase (EC 2.7.2.3) — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_07240 ribulose phosphate epimerase 0.62 AO353_07945 phosphoglycerate kinase — —
Pseudomonas sp. S08-1 0.68 OH686_15115 ribulose-phosphate 3-epimerase 0.63 OH686_10760 Phosphoglycerate kinase — —
Marinobacter adhaerens HP15 0.66 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.61 HP15_2911 phosphoglycerate kinase — —
Azospirillum sp. SherDot2 0.65 MPMX19_02946 Ribulose-phosphate 3-epimerase 0.39 MPMX19_02191 Bifunctional PGK/TIM — —
Variovorax sp. OAS795 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase 0.76 ABID97_RS01760 phosphoglycerate kinase — —
Alteromonas macleodii MIT1002 0.65 MIT1002_00441 Ribulose-phosphate 3-epimerase 0.62 MIT1002_00863 Phosphoglycerate kinase — —
Variovorax sp. SCN45 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.75 GFF5503 Phosphoglycerate kinase (EC 2.7.2.3) — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.64 Xcc-8004.1241.1 Phosphoglycerate kinase (EC 2.7.2.3) — —
Acinetobacter radioresistens SK82 0.64 MPMX26_02569 Ribulose-phosphate 3-epimerase 0.59 MPMX26_01733 Phosphoglycerate kinase — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase 0.61 LRK55_RS05495 phosphoglycerate kinase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS11390 ribulose-phosphate 3-epimerase 0.61 LRK54_RS05740 phosphoglycerate kinase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase 0.63 OKGIIK_01110 pgk phosphoglycerate kinase — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.76 Ac3H11_4404 Phosphoglycerate kinase (EC 2.7.2.3) — —
Rhodospirillum rubrum S1H 0.57 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) 0.42 Rru_A0221 Phosphoglycerate kinase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2240 ribulose-phosphate 3-epimerase 0.41 Ga0059261_0728 phosphoglycerate kinase (EC 2.7.2.3) — —
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_0604 rpe ribulose-phosphate 3-epimerase 0.42 Synpcc7942_1116 pgk phosphoglycerate kinase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS13160 ribulose-phosphate 3-epimerase 0.38 A4249_RS10045 phosphoglycerate kinase — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.39 CCNA_03359 phosphoglycerate kinase — —
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06980 ribulose-phosphate 3-epimerase 0.39 AMB_RS02640 phosphoglycerate kinase — —
Caulobacter crescentus NA1000 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.39 CCNA_03359 phosphoglycerate kinase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS10105 ribulose-phosphate 3-epimerase 0.37 ABIE40_RS15885 phosphoglycerate kinase — —
Sinorhizobium meliloti 1021 0.46 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.39 SMc03981 phosphoglycerate kinase low > 103
Agrobacterium fabrum C58 0.46 Atu1839 ribulose-phosphate 3-epimerase 0.37 Atu3739 phosphoglycerate kinase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase 0.40 AZOBR_RS03885 phosphoglycerate kinase — —
Dinoroseobacter shibae DFL-12 0.45 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) 0.37 Dshi_2155 Phosphoglycerate kinase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) 0.57 DVU2529 pgk phosphoglycerate kinase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.44 TX73_019755 ribulose-phosphate 3-epimerase 0.38 TX73_004860 phosphoglycerate kinase — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe 0.39 PGA1_c17530 phosphoglycerate kinase Pgk — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase 0.38 CA265_RS01880 phosphoglycerate kinase — —
Fusobacterium nucleatum SB010 0.42 HUW76_06410 ribulose-phosphate 3-epimerase 0.34 HUW76_06240 phosphoglycerate kinase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_21180 ribulose-phosphate 3-epimerase 0.37 CA264_09360 phosphoglycerate kinase low > 74
Mycobacterium tuberculosis H37Rv 0.39 Rv1408 Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) 0.35 Rv1437 Probable phosphoglycerate kinase Pgk — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) 0.56 DvMF_0975 pgk phosphoglycerate kinase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase 0.41 ABZR88_RS14215 phosphoglycerate kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_3575 ribulose-phosphate 3-epimerase 0.38 Echvi_0337 3-phosphoglycerate kinase — —
Bacteroides thetaiotaomicron VPI-5482 0.37 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) 0.36 BT1672 phosphoglycerate kinase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.37 BACOVA_01203 ribulose-phosphate 3-epimerase 0.36 BACOVA_04415 phosphoglycerate kinase — —
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase 0.35 HMPREF1078_RS08490 phosphoglycerate kinase — —
Bifidobacterium breve UCC2003 0.36 BBR_RS15800 ribulose-phosphate 3-epimerase 0.37 BBR_RS15535 phosphoglycerate kinase — —
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase 0.37 HMPREF1058_RS15030 phosphoglycerate kinase — —
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase 0.37 HMPREF1181_RS05450 phosphoglycerate kinase — —
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS00225 ribulose-phosphate 3-epimerase 0.37 ABI39_RS10825 phosphoglycerate kinase — —
Methanococcus maripaludis S2 0.35 MMP_RS05755 ribulose-phosphate 3-epimerase 0.26 MMP_RS07870 phosphoglycerate kinase — —
Methanococcus maripaludis JJ 0.35 MMJJ_RS08595 ribulose-phosphate 3-epimerase 0.26 MMJJ_RS06485 phosphoglycerate kinase — —

Not shown: 1 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS16270 only