Conservation of cofitness between Atu3755 and Atu2709 in Agrobacterium fabrum C58

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3755 phosphoribosylaminoimidazole carboxylase ATPase subunit 1.0 Atu2709 3-isopropylmalate dehydratase, large subunit 0.91 9
Rhizobium sp. OAE497 0.69 ABIE40_RS16070 5-(carboxyamino)imidazole ribonucleotide synthase 0.87 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.89 4
Sinorhizobium meliloti 1021 0.66 SMc04002 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.88 SMc03823 isopropylmalate isomerase large subunit 0.93 21
Dinoroseobacter shibae DFL-12 0.48 Dshi_0680 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.65 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.67 23
Phaeobacter inhibens DSM 17395 0.46 PGA1_c24870 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK 0.69 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.90 6
Caulobacter crescentus NA1000 0.45 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 0.66 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.83 26
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_03392 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 0.66 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS08935 5-(carboxyamino)imidazole ribonucleotide synthase 0.49 A4249_RS10005 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.42 AZOBR_RS06140 phosphoribosylaminoimidazole carboxylase 0.73 AZOBR_RS03545 isopropylmalate isomerase
Bosea sp. OAE506 0.42 ABIE41_RS09245 5-(carboxyamino)imidazole ribonucleotide synthase 0.79 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Rhodopseudomonas palustris CGA009 0.42 TX73_021645 5-(carboxyamino)imidazole ribonucleotide synthase 0.76 TX73_001245 3-isopropylmalate dehydratase large subunit
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS03370 phosphoribosylaminoimidazole carboxylase 0.66 HSERO_RS16515 isopropylmalate isomerase
Rhodospirillum rubrum S1H 0.40 Rru_A1051 Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI) 0.72 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) low > 58
Azospirillum sp. SherDot2 0.39 MPMX19_01418 N5-carboxyaminoimidazole ribonucleotide synthase 0.74 MPMX19_01998 3-isopropylmalate dehydratase large subunit
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1428 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit
Pseudomonas sp. S08-1 0.38 OH686_13380 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 OH686_04480 3-isopropylmalate dehydratase large subunit
Magnetospirillum magneticum AMB-1 0.38 AMB_RS11140 5-(carboxyamino)imidazole ribonucleotide synthase 0.72 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Pseudomonas stutzeri RCH2 0.38 Psest_4068 phosphoribosylaminoimidazole carboxylase, PurK protein 0.63 Psest_2591 3-isopropylmalate dehydratase, large subunit
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4081 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Acinetobacter radioresistens SK82 0.38 MPMX26_03050 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.84 17
Pseudomonas sp. RS175 0.38 PFR28_04495 N5-carboxyaminoimidazole ribonucleotide synthase 0.65 PFR28_02824 3-isopropylmalate dehydratase large subunit
Pseudomonas putida KT2440 0.38 PP_5335 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 PP_1985 3-isopropylmalate dehydratase large subunit
Paraburkholderia graminis OAS925 0.37 ABIE53_003423 5-(carboxyamino)imidazole ribonucleotide synthase 0.65 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04185 5-(carboxyamino)imidazole ribonucleotide synthase 0.66 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit
Lysobacter sp. OAE881 0.37 ABIE51_RS15390 5-(carboxyamino)imidazole ribonucleotide synthase 0.52 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit low > 62
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS02450 5-(carboxyamino)imidazole ribonucleotide synthase 0.66 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.56 58
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS16245 phosphoribosylaminoimidazole carboxylase 0.66 BPHYT_RS33915 isopropylmalate isomerase 0.75 25
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_11075 phosphoribosylaminoimidazole carboxylase 0.64 AO356_21400 isopropylmalate isomerase
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_03050 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.50 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_747 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.2012.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.76 17
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2028 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Variovorax sp. SCN45 0.36 GFF5513 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) 0.66 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Pseudomonas simiae WCS417 0.36 PS417_28115 phosphoribosylaminoimidazole carboxylase 0.63 PS417_18600 isopropylmalate isomerase
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_09935 phosphoribosylaminoimidazole carboxylase 0.64 AO353_20620 isopropylmalate isomerase
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_5047 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens SBW25 0.36 PFLU_RS29800 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS03230 phosphoribosylaminoimidazole carboxylase 0.67 RR42_RS14400 isopropylmalate isomerase
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS13815 5-(carboxyamino)imidazole ribonucleotide synthase 0.56 LRK54_RS07375 3-isopropylmalate dehydratase large subunit
Rhodanobacter denitrificans MT42 0.34 LRK55_RS13530 5-(carboxyamino)imidazole ribonucleotide synthase 0.56 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Variovorax sp. OAS795 0.34 ABID97_RS01700 5-(carboxyamino)imidazole ribonucleotide synthase 0.65 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF2770 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.65 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Castellaniella sp019104865 MT123 0.34 ABCV34_RS00565 5-(carboxyamino)imidazole ribonucleotide synthase 0.67 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit
Marinobacter adhaerens HP15 0.34 HP15_2350 phosphoribosylaminoimidazole carboxylase ATPase subunit 0.65 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS09830 5-(carboxyamino)imidazole ribonucleotide synthase 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS08090 5-(carboxyamino)imidazole ribonucleotide synthase 0.68 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit
Dechlorosoma suillum PS 0.32 Dsui_0091 phosphoribosylaminoimidazole carboxylase, PurK protein 0.62 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Ralstonia solanacearum PSI07 0.32 RPSI07_RS21130 5-(carboxyamino)imidazole ribonucleotide synthase 0.67 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum GMI1000 0.32 RS_RS02885 5-(carboxyamino)imidazole ribonucleotide synthase 0.66 RS_RS10000 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum IBSBF1503 0.31 RALBFv3_RS12200 5-(carboxyamino)imidazole ribonucleotide synthase 0.67 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit
Acidovorax sp. GW101-3H11 0.31 Ac3H11_675 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Ralstonia solanacearum UW163 0.31 UW163_RS01410 5-(carboxyamino)imidazole ribonucleotide synthase 0.67 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Bifidobacterium breve UCC2003 0.31 BBR_RS13300 5-(carboxyamino)imidazole ribonucleotide synthase 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit low > 34
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_1428 purK phosphoribosylaminoimidazole carboxylase ATPase subunit 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_0884 phosphoribosylaminoimidazole carboxylase, PurK protein 0.53 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_00260 5-(carboxyamino)imidazole ribonucleotide synthase 0.60 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_12600 5-(carboxyamino)imidazole ribonucleotide synthase 0.53 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0610 5-(carboxyamino)imidazole ribonucleotide synthase 0.65 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS09290 5-(carboxyamino)imidazole ribonucleotide synthase 0.53 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS07745 5-(carboxyamino)imidazole ribonucleotide synthase 0.53 CA265_RS15830 3-isopropylmalate dehydratase large subunit
Pantoea sp. MT58 0.26 IAI47_14355 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.75 40
Alteromonas macleodii MIT1002 0.26 MIT1002_00522 N5-carboxyaminoimidazole ribonucleotide synthase 0.61 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.99 4
Shewanella loihica PV-4 0.25 Shew_1249 phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq) 0.63 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.68 29
Shewanella oneidensis MR-1 0.25 SO3555 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI ptt file) 0.63 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.87 36
Mycobacterium tuberculosis H37Rv 0.25 Rv3276c Probable phosphoribosylaminoimidazole carboxylase ATPase subunit PurK (air carboxylase) (AIRC) 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Escherichia coli BL21 0.24 ECD_00472 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 ECD_00074 3-isopropylmalate dehydratase large subunit low > 60
Klebsiella michiganensis M5al 0.24 BWI76_RS07065 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.80 22
Escherichia coli ECRC98 0.24 JDDGAC_11490 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli Nissle 1917 0.24 ECOLIN_RS03025 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Escherichia coli ECOR38 0.24 HEPCGN_06480 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia coli ECRC101 0.24 MCAODC_27060 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC99 0.24 KEDOAH_20130 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC101 0.24 OKFHMN_07840 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli BW25113 0.24 b0522 purK phosphoribosylaminoimidazole carboxylase (NCBI) 0.64 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.76 50
Escherichia coli ECRC102 0.24 NIAGMN_05895 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Enterobacter sp. TBS_079 0.24 MPMX20_01097 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.78 48
Escherichia fergusonii Becca 0.24 EFB2_03540 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR27 0.24 NOLOHH_00830 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03159 N5-carboxyaminoimidazole ribonucleotide synthase 0.64 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4438 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) 0.64 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Dickeya dianthicola 67-19 0.24 HGI48_RS15190 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.71 15
Escherichia coli ECRC62 0.24 BNILDI_22260 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1
Dickeya dianthicola ME23 0.23 DZA65_RS15995 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.63 47
Shewanella sp. ANA-3 0.23 Shewana3_3156 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.63 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.86 39
Dickeya dadantii 3937 0.23 DDA3937_RS15110 5-(carboxyamino)imidazole ribonucleotide synthase 0.64 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.77 21
Rahnella sp. WP5 0.23 EX31_RS22620 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.92 17
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2460 phosphoribosylaminoimidazole carboxylase, PurK protein 0.64 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit
Pectobacterium carotovorum WPP14 0.23 HER17_RS06470 5-(carboxyamino)imidazole ribonucleotide synthase 0.63 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.97 3
Shewanella amazonensis SB2B 0.23 Sama_1063 phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq) 0.61 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.81 52
Erwinia tracheiphila SCR3 0.22 LU632_RS15250 purK 5-(carboxyamino)imidazole ribonucleotide synthase 0.60 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit low > 74
Serratia liquefaciens MT49 0.22 IAI46_05370 5-(carboxyamino)imidazole ribonucleotide synthase 0.62 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.68 49
Methanococcus maripaludis S2 0.18 MMP_RS00715 formate-dependent phosphoribosylglycinamide formyltransferase 0.24 MMP_RS05930 3-isopropylmalate dehydratase large subunit
Methanococcus maripaludis JJ 0.17 MMJJ_RS04770 formate-dependent phosphoribosylglycinamide formyltransferase 0.24 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_2756 purT phosphoribosylglycinamide formyltransferase 2 (RefSeq) 0.22 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.29 39
Desulfovibrio vulgaris Hildenborough JW710 0.15 DVU0723 purT phosphoribosylglycinamide formyltransferase 2 (TIGR) 0.23 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) low > 55
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS10980 formate-dependent phosphoribosylglycinamide formyltransferase 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit low > 61
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS16250 formate-dependent phosphoribosylglycinamide formyltransferase 0.52 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit low > 56
Bacteroides thetaiotaomicron VPI-5482 0.15 BT0704 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.19 72
Bacteroides ovatus ATCC 8483 0.14 BACOVA_02411 phosphoribosylglycinamide formyltransferase 2 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.38 32
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS14185 formate-dependent phosphoribosylglycinamide formyltransferase 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit low > 72
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17920 formate-dependent phosphoribosylglycinamide formyltransferase 0.50 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit low > 67

Not shown: 0 genomes with orthologs for Atu3755 only; 0 genomes with orthologs for Atu2709 only