Conservation of cofitness between Sama_0337 and Sama_3279 in Shewanella amazonensis SB2B

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 1.0 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.97 10
Shewanella sp. ANA-3 0.86 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.90 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.96 8
Shewanella loihica PV-4 0.86 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.89 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.99 3
Shewanella oneidensis MR-1 0.85 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.89 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.98 4
Escherichia fergusonii Becca 0.73 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.80 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.80 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli BW25113 0.73 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.80 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.98 4
Escherichia coli ECOR27 0.73 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 NOLOHH_06775 ilvD dihydroxy-acid dehydratase 0.94 27
Escherichia coli ECOR38 0.73 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 HEPCGN_13350 ilvD dihydroxy-acid dehydratase 0.98 13
Escherichia coli Nissle 1917 0.73 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.80 ECOLIN_RS21665 dihydroxy-acid dehydratase 0.95 7
Escherichia coli ECRC62 0.73 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 BNILDI_04750 ilvD dihydroxy-acid dehydratase 0.95 51
Escherichia coli BL21 0.73 ECD_00074 3-isopropylmalate dehydratase large subunit 0.80 ECD_03649 dihydroxyacid dehydratase 0.98 1
Escherichia coli ECRC100 0.72 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 OKFHMN_14640 ilvD dihydroxy-acid dehydratase 1.00 1
Escherichia coli ECRC99 0.72 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 KEDOAH_13510 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC101 0.72 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 MCAODC_05145 ilvD dihydroxy-acid dehydratase 0.96 11
Escherichia coli ECRC102 0.72 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 NIAGMN_12395 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC98 0.72 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.80 JDDGAC_18260 ilvD dihydroxy-acid dehydratase 0.98 9
Klebsiella michiganensis M5al 0.72 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.79 BWI76_RS00975 dihydroxy-acid dehydratase 0.92 13
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.79 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.96 4
Pantoea sp. MT58 0.72 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.79 IAI47_01035 dihydroxy-acid dehydratase 0.99 3
Enterobacter sp. TBS_079 0.72 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.79 MPMX20_04499 Dihydroxy-acid dehydratase 0.94 11
Rahnella sp. WP5 0.72 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.76 EX31_RS15005 dihydroxy-acid dehydratase 0.99 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.79 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.78 DDA3937_RS20155 dihydroxy-acid dehydratase 0.66 54
Serratia liquefaciens MT49 0.71 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.80 IAI46_24345 dihydroxy-acid dehydratase 0.77 10
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.79 CSW01_00140 dihydroxy-acid dehydratase low > 62
Dickeya dianthicola ME23 0.70 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.78 DZA65_RS21335 dihydroxy-acid dehydratase 0.89 5
Dickeya dianthicola 67-19 0.70 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.78 HGI48_RS20295 dihydroxy-acid dehydratase 0.76 28
Pectobacterium carotovorum WPP14 0.70 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.80 HER17_RS01075 dihydroxy-acid dehydratase 0.97 12
Erwinia tracheiphila SCR3 0.68 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.78 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.87 6
Alteromonas macleodii MIT1002 0.66 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.80 MIT1002_04041 Dihydroxy-acid dehydratase 0.99 2
Azospirillum sp. SherDot2 0.64 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.74 MPMX19_05356 Dihydroxy-acid dehydratase
Rhodospirillum rubrum S1H 0.63 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.96 3
Azospirillum brasilense Sp245 0.62 AZOBR_RS03545 isopropylmalate isomerase 0.73 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Sinorhizobium meliloti 1021 0.61 SMc03823 isopropylmalate isomerase large subunit 0.73 SMc04045 dihydroxy-acid dehydratase 0.97 8
Rhodopseudomonas palustris CGA009 0.61 TX73_001245 3-isopropylmalate dehydratase large subunit 0.72 TX73_007515 dihydroxy-acid dehydratase
Castellaniella sp019104865 MT123 0.61 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Magnetospirillum magneticum AMB-1 0.61 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.72 AMB_RS12770 dihydroxy-acid dehydratase
Agrobacterium fabrum C58 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.72 Atu1918 dihydroxy-acid dehydratase
Rhizobium sp. OAE497 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.73 ABIE40_RS08005 dihydroxy-acid dehydratase 0.87 67
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14400 isopropylmalate isomerase 0.29 RR42_RS16210 dihydroxy-acid dehydratase
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.91 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.74 Psyr_0469 dihydroxyacid dehydratase 0.94 4
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.74 Psyr_0469 dihydroxyacid dehydratase 0.93 7
Pseudomonas sp. RS175 0.60 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.75 PFR28_04278 Dihydroxy-acid dehydratase 0.76 4
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.80 34
Pseudomonas putida KT2440 0.60 PP_1985 3-isopropylmalate dehydratase large subunit 0.74 PP_5128 Dihydroxy-acid dehydratase 0.90 5
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS16515 isopropylmalate isomerase 0.71 HSERO_RS02650 dihydroxy-acid dehydratase 0.96 5
Pseudomonas stutzeri RCH2 0.59 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.74 Psest_0234 dihydroxy-acid dehydratase
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_20620 isopropylmalate isomerase 0.74 AO353_08345 dihydroxy-acid dehydratase 0.96 6
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_21400 isopropylmalate isomerase 0.74 AO356_13250 dihydroxy-acid dehydratase 0.94 10
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.89 27
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.87 5
Mycobacterium tuberculosis H37Rv 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad)
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.74 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Pseudomonas simiae WCS417 0.59 PS417_18600 isopropylmalate isomerase 0.74 PS417_26890 dihydroxy-acid dehydratase 0.90 8
Ralstonia solanacearum GMI1000 0.59 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.29 RS_RS12105 dihydroxy-acid dehydratase
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.72 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Bosea sp. OAE506 0.59 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.29 ABIE41_RS15690 dihydroxy-acid dehydratase
Marinobacter adhaerens HP15 0.59 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.71 HP15_595 dihydroxy-acid dehydratase low > 73
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase
Ralstonia solanacearum UW163 0.59 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.29 UW163_RS09135 dihydroxy-acid dehydratase
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.74 PFLU_RS28535 dihydroxy-acid dehydratase 0.88 7
Pseudomonas fluorescens SBW25 0.59 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.74 PFLU_RS28535 dihydroxy-acid dehydratase 0.78 11
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.66 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33915 isopropylmalate isomerase 0.72 BPHYT_RS10100 dihydroxy-acid dehydratase 0.83 39
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase
Pseudomonas sp. S08-1 0.59 OH686_04480 3-isopropylmalate dehydratase large subunit 0.75 OH686_14100 dihydroxy-acid dehydratase 0.94 1
Acinetobacter radioresistens SK82 0.58 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.29 MPMX26_03019 Dihydroxy-acid dehydratase 0.93 15
Acidovorax sp. GW101-3H11 0.58 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.74 47
Paraburkholderia graminis OAS925 0.58 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.74 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Variovorax sp. OAS795 0.58 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.31 ABID97_RS17500 dihydroxy-acid dehydratase
Variovorax sp. SCN45 0.58 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Dechlorosoma suillum PS 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.74 Dsui_1122 dihydroxy-acid dehydratase
Caulobacter crescentus NA1000 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.71 CCNA_03139 dihydroxy-acid dehydratase 0.96 13
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.71 CCNA_03139 dihydroxy-acid dehydratase low > 67
Dinoroseobacter shibae DFL-12 0.56 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.30 Dshi_0129 dihydroxy-acid dehydratase (RefSeq)
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_09435 3-isopropylmalate dehydratase large subunit 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.68 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.93 5
Sphingomonas koreensis DSMZ 15582 0.55 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.99 5
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.26 CA265_RS15795 dihydroxy-acid dehydratase 0.94 8
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase
Bifidobacterium breve UCC2003 0.52 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.57 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.25 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.28 Echvi_2055 dihydroxy-acid dehydratase 0.77 1
Lysobacter sp. OAE881 0.51 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.94 16
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.24 A4249_RS10030 dihydroxy-acid dehydratase 1.00 7
Bacteroides ovatus ATCC 8483 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.59 BACOVA_03302 dihydroxy-acid dehydratase 0.98 4
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.94 37
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.95 5
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.60 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.89 17
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.66 4
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.62 HMPREF1078_RS16695 dihydroxy-acid dehydratase 0.93 46
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.61 HMPREF1058_RS16815 dihydroxy-acid dehydratase low > 67
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.61 ABI39_RS12715 dihydroxy-acid dehydratase 0.92 3
Methanococcus maripaludis JJ 0.22 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit 0.34 MMJJ_RS03675 dihydroxy-acid dehydratase
Methanococcus maripaludis S2 0.22 MMP_RS05930 3-isopropylmalate dehydratase large subunit 0.33 MMP_RS01700 dihydroxy-acid dehydratase 0.63 23
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.38 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.95 5
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.38 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.88 28

Not shown: 1 genomes with orthologs for Sama_0337 only; 0 genomes with orthologs for Sama_3279 only