Homologs of xerD from Escherichia coli ECOR38

xerD: integrase
SEED: Integrase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Escherichia coli ECOR38 HEPCGN_04445 xerD integrase insig. 100 100
o Escherichia coli ECRC100 OKFHMN_26010 xerD integrase insig. 100 100
o Escherichia coli ECRC101 MCAODC_19380 xerD integrase insig. 100 100
o Escherichia coli ECRC99 KEDOAH_02080 xerD integrase no data 100 100
o Escherichia coli ECRC98 JDDGAC_00600 xerD integrase insig. 100 100
o Escherichia coli ECRC102 NIAGMN_02040 xerD integrase insig. 99 100
o Pectobacterium carotovorum WPP14 HER17_RS07965 tyrosine-type recombinase/integrase insig. 64 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11660 site-specific integrase no data 57 95
o Pantoea sp. MT58 IAI47_02995 tyrosine-type recombinase/integrase insig. 55 94
  Erwinia tracheiphila SCR3 LU632_RS03480 tyrosine-type recombinase/integrase insig. 58 93
o Klebsiella pneumoniae MKP103 KDGMDA_02490 integrase insig. 58 94
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_05430 xerD integrase cofit 57 93
o Dickeya dianthicola 67-19 HGI48_RS02890 tyrosine-type recombinase/integrase insig. 57 95
  Dickeya dadantii 3937 DDA3937_RS04115 site-specific integrase insig. 57 93
  Dickeya dianthicola ME23 DZA65_RS04005 site-specific integrase insig. 57 93
o Escherichia coli ECRC62 BNILDI_11500 xerD integrase cofit 57 94
o Enterobacter sp. TBS_079 MPMX20_03950 Tyrosine recombinase XerC strong 54 95
  Pectobacterium carotovorum WPP14 HER17_RS05350 site-specific integrase insig. 55 93
  Pectobacterium carotovorum WPP14 HER17_RS18625 tyrosine-type recombinase/integrase cofit 52 98
  Klebsiella michiganensis M5al BWI76_RS09185 integrase insig. 52 93
o Escherichia coli BL21 ECD_00815 integrase for prophage insig. 53 93
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02862 Tyrosine recombinase XerD insig. 53 93
  Escherichia fergusonii Becca EFB2_03259 Tyrosine recombinase XerC insig. 53 93
  Klebsiella pneumoniae MKP103 KDGMDA_17435 integrase insig. 53 93
o Pseudomonas segetis P6 MPMX49_04317 Tyrosine recombinase XerC insig. 49 93
  Pseudomonas segetis P6 MPMX49_00860 Tyrosine recombinase XerC insig. 47 95
o Burkholderia phytofirmans PsJN BPHYT_RS01250 integrase insig. 48 93
o Pseudomonas sp. S08-1 OH686_07985 Phage integrase cofit 48 94
  Pseudomonas segetis P6 MPMX49_01322 Tyrosine recombinase XerC insig. 46 93
o Pseudomonas stutzeri RCH2 Psest_2903 Site-specific recombinase XerD insig. 45 94
  Pseudomonas aeruginosa PA14 IKLFDK_05595 integrase insig. 46 94
  Pseudomonas stutzeri RCH2 Psest_4123 Site-specific recombinase XerD sig. 45 93
o Marinobacter adhaerens HP15 HP15_3093 phage integrase family protein insig. 43 93
  Pseudomonas aeruginosa PA14 IKLFDK_03615 Putative integrase sig. 44 84
o Rahnella sp. WP5 EX31_RS18465 tyrosine-type recombinase/integrase insig. 40 94
  Escherichia coli ECRC98 JDDGAC_09320 integrase strong 40 93
o Vibrio cholerae E7946 ATCC 55056 CSW01_11165 integrase insig. 41 98
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_25970 Tyr recombinase domain-containing protein cofit 41 93
  Pseudomonas stutzeri RCH2 Psest_3052 Site-specific recombinase XerD insig. 40 93
  Escherichia coli ECRC101 MCAODC_20995 int Integrase insig. 41 93
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01645 Integrase no data 38 93
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_27510 Integrase no data 38 93
  Erwinia tracheiphila SCR3 LU632_RS01475 tyrosine-type recombinase/integrase sig. 38 93
  Enterobacter asburiae PDN3 EX28DRAFT_0878 Site-specific recombinase XerD insig. 40 93
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01510 Integrase cofit 38 77
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_23350 integrase no data 45 56
  Erwinia tracheiphila SCR3 LU632_RS21160 tyrosine-type recombinase/integrase no data 46 56
  Pseudomonas aeruginosa PA14 IKLFDK_29580 putative bacteriophage integrase no data 53 38
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_25455 Site-specific recombinase phage integrase family protein cofit 53 37
  Escherichia coli ECOR38 HEPCGN_26815 xerD integrase insig. 73 23
  Rhodanobacter denitrificans MT42 LRK55_RS00045 site-specific integrase insig. 33 76
o Sinorhizobium meliloti 1021 SMc02397 integrase insig. 31 91
  Lysobacter sp. OAE881 ABIE51_RS07380 site-specific integrase strong 27 77
  Magnetospirillum magneticum AMB-1 AMB_RS18470 site-specific integrase insig. 29 77
  Agrobacterium fabrum C58 Atu1194 phage-related integrase insig. 25 91
  Shewanella oneidensis MR-1 SO_A0045 site-specific recombinase, phage integrase family (NCBI) insig. 32 70
  Dinoroseobacter shibae DFL-12 Dshi_1611 integrase family protein (RefSeq) strong 29 72
  Caulobacter crescentus NA1000 CCNA_03101 site-specific tyrosine recombinase XerD strong 28 71
  Caulobacter crescentus NA1000 Δfur CCNA_03101 site-specific tyrosine recombinase XerD cofit 28 71
  Dinoroseobacter shibae DFL-12 Dshi_3213 integrase family protein (RefSeq) insig. 29 68
  Alteromonas macleodii MIT1002 MIT1002_00157 Tyrosine recombinase XerC insig. 29 58
  Sphingobium sp. HT1-2 GFF3220 Phage (Mu-like) virion morphogenesis protein cofit 26 90
  Azospirillum brasilense Sp245 AZOBR_RS03240 recombinase XerD insig. 28 74
  Dechlorosoma suillum PS Dsui_1127 site-specific recombinase XerD cofit 25 90
  Magnetospirillum magneticum AMB-1 AMB_RS20435 DUF4102 domain-containing protein insig. 27 93
  Xanthobacter sp. DMC5 GFF2054 Tyrosine recombinase XerC no data 34 41
  Rhodopseudomonas palustris CGA009 TX73_000945 tyrosine recombinase XerC sig. 32 41
  Bifidobacterium breve UCC2003 BBR_RS16755 site-specific tyrosine recombinase XerD strong 30 54
  Escherichia coli BW25113 b0537 intD DLP12 prophage; predicted integrase (NCBI) sig. 28 68
  Sphingobium sp. HT1-2 GFF2416 Site-specific tyrosine recombinase XerD strong 28 70
  Castellaniella sp019104865 MT123 ABCV34_RS00515 site-specific tyrosine recombinase XerD strong 28 69
  Escherichia coli ECOR27 NOLOHH_00750 intD Prophage integrase IntD insig. 28 68
  Azospirillum brasilense Sp245 AZOBR_RS30360 integrase insig. 27 76
  Ralstonia solanacearum UW163 UW163_RS23220 recombinase XerC insig. 32 53
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2764 Site-specific recombinase XerD sig. 29 45
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15025 tyrosine recombinase XerC strong 29 77
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3595 Site-specific recombinase XerD sig. 29 72
  Magnetospirillum magneticum AMB-1 AMB_RS04775 integrase insig. 28 58
  Ralstonia solanacearum GMI1000 RS_RS17610 recombinase XerC insig. 32 53
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14800 hypothetical protein insig. 29 61
  Escherichia coli BL21 ECD_00486 DLP12 prophage; putative phage integrase insig. 27 68
  Rhodanobacter denitrificans MT42 LRK55_RS08300 tyrosine recombinase XerC strong 29 76
  Phaeobacter inhibens DSM 17395 PGA1_c00260 putative phage integrase, catalytic core insig. 27 95
  Rhodospirillum rubrum S1H Rru_A1220 Phage integrase (NCBI) no data 26 68
  Azospirillum sp. SherDot2 MPMX19_02110 Tyrosine recombinase XerC no data 29 38
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS12210 tyrosine recombinase XerC insig. 28 41
  Escherichia coli ECRC100 OKFHMN_09660 xerD integrase insig. 26 95
  Escherichia coli ECRC98 JDDGAC_13285 xerD integrase insig. 26 95
  Pseudomonas sp. DMC3 GFF370 Tyrosine recombinase XerC cofit 28 75
  Escherichia coli ECRC102 NIAGMN_07520 xerD integrase insig. 29 71
  Dinoroseobacter shibae DFL-12 Dshi_5002 xerC hypothetical protein (NCBI) no data 27 43
  Phaeobacter inhibens DSM 17395 PGA1_c14060 tyrosine recombinase XerD strong 26 79
  Escherichia coli ECRC101 MCAODC_00180 xerD Site-specific recombinase XerD insig. 29 71
  Bosea sp. OAE506 ABIE41_RS07870 tyrosine recombinase XerC strong 29 46
  Pseudomonas putida KT2440 PP_2297 putative integrative genetic element Ppu40, integrase insig. 29 68
  Bacteroides ovatus ATCC 8483 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein insig. 28 66
  Desulfovibrio vulgaris Hildenborough JW710 DVU2197 site-specific recombinase, phage integrase family (TIGR) insig. 28 66
  Pseudomonas fluorescens FW300-N2C3 AO356_12725 recombinase XerC strong 27 73
  Rhodanobacter sp. FW510-T8 OKGIIK_15325 xerC tyrosine recombinase XerC insig. 27 76
  Xanthobacter sp. DMC5 GFF3081 Tyrosine recombinase XerD no data 30 48