Homologs of GFF3945 from Sphingobium sp. HT1-2

ATP-dependent RNA helicase RhlE (EC 3.6.4.13)
SEED: ATP-dependent RNA helicase RhlE
KEGG: ATP-dependent RNA helicase RhlE

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3945 ATP-dependent RNA helicase RhlE (EC 3.6.4.13) cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0964 Superfamily II DNA and RNA helicases sig. 67 78
  Caulobacter crescentus NA1000 CCNA_00878 ATP-dependent RNA helicase cofit 60 76
  Caulobacter crescentus NA1000 Δfur CCNA_00878 ATP-dependent RNA helicase cofit 60 76
  Xanthobacter sp. DMC5 GFF3462 ATP-dependent RNA helicase RhlE insig. 61 76
o Bosea sp. OAE506 ABIE41_RS22380 DEAD/DEAH box helicase insig. 59 76
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS00535 DEAD/DEAH box helicase no data 59 75
o Rhodopseudomonas palustris CGA009 TX73_019020 DEAD/DEAH box helicase insig. 51 92
o Magnetospirillum magneticum AMB-1 AMB_RS07215 ATP-dependent helicase insig. 51 92
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16115 DEAD/DEAH box helicase sig. 54 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS01200 DEAD/DEAH box helicase insig. 55 75
o Shewanella amazonensis SB2B Sama_2687 DEAD-box ATP dependent DNA helicase (RefSeq) insig. 47 95
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16030 DEAD/DEAH box helicase insig. 54 75
o Azospirillum sp. SherDot2 MPMX19_02097 ATP-dependent RNA helicase RhlE insig. 51 82
o Shewanella loihica PV-4 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 48 91
o Phocaeicola dorei CL03T12C01 ABI39_RS02170 DEAD/DEAH box helicase insig. 48 92
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02855 DEAD/DEAH box helicase sig. 55 75
o Cellulophaga baltica 18 M666_RS18630 DEAD/DEAH box helicase insig. 52 76
o Erwinia tracheiphila SCR3 LU632_RS09215 rhlE ATP-dependent RNA helicase RhlE cofit 46 98
o Shewanella sp. ANA-3 Shewana3_0810 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 45 94
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_19640 rhlE ATP-dependent RNA helicase RhlE cofit 46 98
  Pseudomonas stutzeri RCH2 Psest_0312 Superfamily II DNA and RNA helicases strong 49 89
  Pseudomonas simiae WCS417 PS417_26525 DEAD/DEAH box helicase strong 52 76
  Pseudomonas fluorescens SBW25 PFLU_RS28180 DEAD/DEAH box helicase cofit 52 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28180 DEAD/DEAH box helicase sig. 52 76
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1048 ATP-dependent RNA helicase RhlE sig. 52 76
o Erwinia amylovora T8 OLJFJH_16685 ATP-dependent RNA helicase RhlE cofit 47 96
o Ralstonia solanacearum PSI07 RPSI07_RS21325 RNA helicase sig. 49 89
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05436 ATP-dependent RNA helicase RhlE cofit 52 76
  Pseudomonas sp. RS175 PFR28_04204 ATP-dependent RNA helicase RhlE sig. 52 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2382 ATP-dependent RNA helicase RhlE sig. 52 76
o Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 51 81
  Pseudomonas sp. DMC3 GFF174 ATP-dependent RNA helicase RhlE cofit 52 76
  Pseudomonas orientalis W4I3 QF045_RS00920 DEAD/DEAH box helicase cofit 52 76
  Shewanella oneidensis MR-1 SO3783 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 53 75
  Pseudomonas fluorescens FW300-N2E3 AO353_08030 DEAD/DEAH box helicase sig. 52 76
  Cupriavidus basilensis FW507-4G11 RR42_RS02870 RNA helicase sig. 52 78
  Pseudomonas sp. S08-1 OH686_10835 ATP-dependent RNA helicase RhlE cofit 53 76
o Paraburkholderia sabiae LMG 24235 QEN71_RS02265 DEAD/DEAH box helicase strong 54 76
  Pseudomonas fluorescens FW300-N2C3 AO356_13590 DEAD/DEAH box helicase sig. 52 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4635 ATP-dependent RNA helicase RhlE strong 52 76
o Sinorhizobium meliloti 1021 SM_b20880 ATP-dependent RNA helicase strong 46 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 51 81
  Enterobacter asburiae PDN3 EX28DRAFT_2194 Superfamily II DNA and RNA helicases insig. 52 76
o Marinobacter adhaerens HP15 HP15_3607 DEAD/DEAH box helicase domain protein insig. 50 82
o Ralstonia solanacearum GMI1000 RS_RS02695 RNA helicase sig. 49 91
o Castellaniella sp019104865 MT123 ABCV34_RS12515 DEAD/DEAH box helicase cofit 47 99
  Pseudomonas syringae pv. syringae B728a Psyr_0458 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal insig. 51 76
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0458 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal insig. 51 76
o Agrobacterium fabrum C58 Atu2333 ATP-dependent RNA helicase strong 52 76
o Burkholderia phytofirmans PsJN BPHYT_RS16445 RNA helicase strong 45 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11875 RNA helicase strong 52 81
  Ralstonia solanacearum UW163 UW163_RS01715 RNA helicase insig. 52 81
  Variovorax sp. OAS795 ABID97_RS21170 DEAD/DEAH box helicase sig. 51 79
  Enterobacter sp. TBS_079 MPMX20_01425 ATP-dependent RNA helicase RhlE insig. 52 75
o Methylophilus sp. DMC18 GFF250 ATP-dependent RNA helicase RhlE insig. 47 96
  Pseudomonas segetis P6 ACVTMO_RS03195 DEAD/DEAH box helicase strong 46 95
  Pseudomonas sp. SVBP6 COO64_RS17470 DEAD/DEAH box helicase insig. 45 96
  Acidovorax sp. GW101-3H11 Ac3H11_386 ATP-dependent RNA helicase RhlE insig. 52 76
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03875 ATP-dependent RNA helicase RhlE cofit 52 76
  Ralstonia sp. UNC404CL21Col ABZR87_RS07850 DEAD/DEAH box helicase sig. 52 79
o Escherichia coli Nissle 1917 ECOLIN_RS04245 ATP-dependent RNA helicase RhlE insig. 52 76
o Serratia liquefaciens MT49 IAI46_06620 ATP-dependent RNA helicase RhlE cofit 52 78
  Escherichia coli BL21 ECD_00764 ATP-dependent RNA helicase insig. 52 76
  Escherichia coli ECOR27 NOLOHH_22645 rhlE ATP-dependent RNA helicase RhlE insig. 52 76
  Escherichia coli ECRC100 OKFHMN_06290 rhlE ATP-dependent RNA helicase RhlE cofit 52 76
  Escherichia coli ECRC101 MCAODC_25505 rhlE ATP-dependent RNA helicase RhlE insig. 52 76
  Escherichia coli ECRC102 NIAGMN_04335 rhlE ATP-dependent RNA helicase RhlE cofit 52 76
  Escherichia coli ECRC62 BNILDI_20925 rhlE ATP-dependent RNA helicase RhlE insig. 52 76
  Escherichia coli ECRC98 JDDGAC_09925 rhlE ATP-dependent RNA helicase RhlE sig. 52 76
  Escherichia coli ECRC99 KEDOAH_21620 rhlE ATP-dependent RNA helicase RhlE no data 52 76
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02916 ATP-dependent RNA helicase RhlE insig. 52 76
  Escherichia coli BW25113 b0797 rhlE RNA helicase (NCBI) sig. 52 76
  Variovorax sp. SCN45 GFF6779 ATP-dependent RNA helicase RhlE (EC 3.6.4.13) insig. 51 76
o Escherichia fergusonii Becca EFB2_03308 ATP-dependent RNA helicase RhlE insig. 52 76
  Pantoea sp. MT58 IAI47_13435 ATP-dependent RNA helicase RhlE insig. 52 76
  Pseudomonas sp. BP01 JOY50_RS09795 DEAD/DEAH box helicase insig. 52 76
  Pseudomonas putida KT2440 PP_4980 ATP-dependent RNA helicase sig. 53 76
o Dickeya dadantii 3937 DDA3937_RS08645 ATP-dependent RNA helicase RhlE sig. 52 76
  Dinoroseobacter shibae DFL-12 Dshi_2715 DEAD/DEAH box helicase domain protein (RefSeq) insig. 52 74
o Pectobacterium carotovorum WPP14 HER17_RS13325 ATP-dependent RNA helicase RhlE insig. 52 76
o Klebsiella pneumoniae MKP103 KDGMDA_17180 ATP-dependent RNA helicase RhlE sig. 52 76
  Bacteroides ovatus ATCC 8483 BACOVA_01521 DEAD/DEAH box helicase insig. 49 76
o Klebsiella michiganensis M5al BWI76_RS08915 ATP-dependent RNA helicase RhlE sig. 51 76
  Bacteroides thetaiotaomicron VPI-5482 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) strong 50 76
  Pseudomonas aeruginosa MRSN321 DY961_RS22125 DEAD/DEAH box helicase strong 45 95
o Escherichia coli ECOR38 HEPCGN_01750 rhlE ATP-dependent RNA helicase RhlE insig. 51 76
  Pseudomonas aeruginosa PA14 IKLFDK_23280 DEAD/DEAH box helicase strong 45 95
  Pseudomonas aeruginosa PUPa3 DQ20_RS37180 DEAD/DEAH box helicase strong 45 95
o Dickeya dianthicola ME23 DZA65_RS09075 ATP-dependent RNA helicase RhlE insig. 46 89
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF696 ATP-dependent RNA helicase RhlE insig. 51 76
  Rhodospirillum rubrum S1H Rru_A1915 DEAD/DEAH box helicase (NCBI) cofit 52 77
  Dickeya dianthicola 67-19 HGI48_RS08785 ATP-dependent RNA helicase RhlE cofit 52 76
  Rhizobium sp. OAE497 ABIE40_RS13915 DEAD/DEAH box helicase insig. 51 76
o Alteromonas macleodii MIT1002 MIT1002_03342 ATP-dependent RNA helicase RhlE insig. 44 95
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02200 DEAD/DEAH box helicase insig. 53 78
  Rahnella sp. WP5 EX31_RS23775 ATP-dependent RNA helicase RhlE insig. 52 76
  Bacteroides stercoris CC31F HMPREF1181_RS03715 DEAD/DEAH box helicase insig. 50 76
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08975 DEAD/DEAH box helicase insig. 56 72
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3530 ATP-dependent RNA helicase RhlE cofit 50 78