| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Dechlorosoma suillum PS | Dsui_3205 | | pseudouridine synthase, RluA family | insig. | 100 | 100 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3559 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | insig. | 56 | 96 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_174 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | insig. | 55 | 100 |
| o | Shewanella sp. ANA-3 | Shewana3_0799 | | ribosomal large subunit pseudouridine synthase A (RefSeq) | insig. | 52 | 99 |
| o | Escherichia fergusonii Becca | EFB2_03987 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 52 | 100 |
| o | Variovorax sp. SCN45 | GFF7036 | | LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) | insig. | 55 | 94 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_12790 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 52 | 100 |
| o | Pantoea sp. MT58 | IAI47_16060 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 50 | 100 |
| o | Dickeya dadantii 3937 | DDA3937_RS18240 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 52 | 100 |
| o | Escherichia coli BL21 | ECD_00060 | | dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent | cofit | 51 | 100 |
| o | Escherichia coli ECOR27 | NOLOHH_03150 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Escherichia coli ECOR38 | HEPCGN_08795 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Escherichia coli ECRC62 | BNILDI_08455 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03600 | | Ribosomal large subunit pseudouridine synthase A | insig. | 51 | 100 |
| o | Escherichia coli BW25113 | b0058 | rluA | pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) | sig. | 51 | 100 |
| o | Escherichia coli Nissle 1917 | ECOLIN_RS00310 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Shewanella amazonensis SB2B | Sama_0606 | | pseudouridylate synthase (RefSeq) | sig. | 51 | 100 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS12935 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Dickeya dianthicola 67-19 | HGI48_RS18175 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_3106 | | pseudouridine synthase (RefSeq) | insig. | 53 | 97 |
| o | Shewanella loihica PV-4 | Shew_0783 | | pseudouridylate synthase (RefSeq) | no data | 51 | 99 |
| o | Klebsiella michiganensis M5al | BWI76_RS04565 | | bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA | sig. | 51 | 100 |
| o | Escherichia coli ECRC100 | OKFHMN_10805 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Escherichia coli ECRC101 | MCAODC_01320 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Escherichia coli ECRC102 | NIAGMN_08655 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Escherichia coli ECRC98 | JDDGAC_14400 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Escherichia coli ECRC99 | KEDOAH_17350 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | no data | 51 | 100 |
| o | Dickeya dianthicola ME23 | DZA65_RS19315 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 98 |
| o | Pseudomonas sp. BP01 | JOY50_RS16355 | | RluA family pseudouridine synthase | insig. | 50 | 97 |
| o | Pseudomonas sp. SVBP6 | COO64_RS06925 | | RluA family pseudouridine synthase | insig. | 51 | 97 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS02985 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 50 | 100 |
| o | Pseudomonas putida KT2440 | PP_1731 | | 23S rRNA (746) and tRNA (32) pseudouridine synthase | sig. | 50 | 97 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c33080 | | ribosomal large subunit pseudouridine synthase A | sig. | 51 | 99 |
| o | Rahnella sp. WP5 | EX31_RS03750 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 49 | 99 |
| o | Serratia liquefaciens MT49 | IAI46_03270 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 52 | 97 |
| o | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF184 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | cofit | 50 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_00752 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 50 | 100 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_12700 | | RNA pseudouridine synthase | insig. | 50 | 94 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_06080 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | cofit | 51 | 100 |
| o | Enterobacter asburiae PDN3 | EX28DRAFT_3650 | | pseudouridine synthase, RluA family | insig. | 50 | 100 |
| o | Erwinia tracheiphila SCR3 | LU632_RS02800 | rluA | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | no data | 50 | 100 |
| o | Erwinia amylovora T8 | OLJFJH_01345 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 51 | 100 |
| o | Pseudomonas stutzeri RCH2 | Psest_2948 | | pseudouridine synthase, RluA family | sig. | 50 | 97 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_1514 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 44 | 100 |
| o | Alteromonas macleodii MIT1002 | MIT1002_00658 | | Ribosomal large subunit pseudouridine synthase A | insig. | 49 | 99 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_19405 | | pseudouridine synthase | insig. | 48 | 97 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5794 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | strong | 48 | 97 |
| o | Pseudomonas sp. S08-1 | OH686_19760 | | LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase | insig. | 49 | 97 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_16600 | | RNA pseudouridine synthase | insig. | 50 | 97 |
| o | Pseudomonas segetis P6 | MPMX49_03213 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 49 | 97 |
| o | Pseudomonas sp. RS175 | PFR28_03154 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 48 | 97 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3753 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | sig. | 49 | 97 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4194 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | insig. | 48 | 97 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_02385 | | pseudouridine synthase | no data | 48 | 97 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS18405 | | RluA family pseudouridine synthase | insig. | 50 | 99 |
| | Shewanella amazonensis SB2B | Sama_2197 | | pseudouridylate synthase (RefSeq) | insig. | 44 | 100 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS21445 | | RluA family pseudouridine synthase | insig. | 49 | 97 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21445 | | RluA family pseudouridine synthase | sig. | 49 | 97 |
| o | Pseudomonas simiae WCS417 | PS417_19475 | | pseudouridine synthase | sig. | 49 | 97 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04097 | | Dual-specificity RNA pseudouridine synthase RluA | cofit | 49 | 97 |
| o | Pseudomonas sp. DMC3 | GFF2599 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 48 | 97 |
| o | Acinetobacter radioresistens SK82 | MPMX26_02477 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 45 | 97 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_1610 | | ribosomal large subunit pseudouridine synthase A | insig. | 46 | 97 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1610 | | ribosomal large subunit pseudouridine synthase A | insig. | 46 | 97 |
| o | Agrobacterium fabrum C58 | Atu4041 | | ribosomal large subunit pseudouridine synthase A | sig. | 46 | 99 |
| | Acinetobacter baumannii LAC-4 | RR41_RS05195 | | RluA family pseudouridine synthase | insig. | 44 | 94 |
| | Shewanella sp. ANA-3 | Shewana3_1430 | | pseudouridine synthase (RefSeq) | sig. | 43 | 100 |
| | Pantoea sp. MT58 | IAI47_07280 | | RluA family pseudouridine synthase | insig. | 41 | 98 |
| | Shewanella loihica PV-4 | Shew_1460 | | pseudouridine synthase (RefSeq) | no data | 42 | 100 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS03255 | | pseudouridine synthase | insig. | 43 | 98 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05306 | | pseudouridine synthase, RluA family | insig. | 44 | 96 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_1374 | rluA | ribosomal large subunit pseudouridine synthase D | sig. | 46 | 95 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS05180 | | RluA family pseudouridine synthase | insig. | 43 | 95 |
| | Acinetobacter radioresistens SK82 | MPMX26_01026 | | Dual-specificity RNA pseudouridine synthase RluA | cofit | 44 | 94 |
| | Klebsiella michiganensis M5al | BWI76_RS17615 | | RNA pseudouridine synthase | insig. | 42 | 98 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS01385 | | RluA family pseudouridine synthase | insig. | 40 | 98 |
| | Shewanella loihica PV-4 | Shew_2529 | | pseudouridine synthase (RefSeq) | insig. | 46 | 98 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS18705 | | RluA family pseudouridine synthase | insig. | 44 | 95 |
| | Erwinia amylovora T8 | OLJFJH_10525 | | RNA pseudouridine synthase | insig. | 41 | 98 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_14535 | | RluA family pseudouridine synthase | insig. | 45 | 95 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4501 | | ribosomal large subunit pseudouridine synthase A (NCBI ptt file) | insig. | 44 | 95 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14830 | | RluA family pseudouridine synthase | insig. | 44 | 96 |
| | Serratia liquefaciens MT49 | IAI46_20985 | | RluA family pseudouridine synthase | insig. | 40 | 98 |
| | Enterobacter sp. TBS_079 | MPMX20_02187 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 40 | 98 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_24890 | | RNA pseudouridine synthase | insig. | 40 | 98 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS13725 | | RNA pseudouridine synthase | insig. | 45 | 95 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1359 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 39 | 98 |
| | Rahnella sp. WP5 | EX31_RS17740 | | RluA family pseudouridine synthase | insig. | 39 | 98 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | sig. | 41 | 97 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | sig. | 40 | 99 |
| | Pseudomonas putida KT2440 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | no data | 39 | 96 |
| | Pseudomonas sp. BP01 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | sig. | 39 | 96 |
| | Shewanella loihica PV-4 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | strong | 37 | 94 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 40 | 96 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 40 | 96 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS22215 | | RluA family pseudouridine synthase | no data | 39 | 99 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 41 | 97 |
| | Pseudomonas segetis P6 | MPMX49_03922 | | Ribosomal large subunit pseudouridine synthase D | strong | 38 | 96 |
| | Pseudomonas stutzeri RCH2 | Psest_0709 | | pseudouridine synthase, RluA family | strong | 39 | 96 |
| | Pseudomonas sp. S08-1 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | cofit | 39 | 96 |