Homologs of CSW01_11715 from Vibrio cholerae E7946 ATCC 55056

RNA polymerase subunit sigma
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 100 100
  Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 45 86
o Alteromonas macleodii MIT1002 MIT1002_02682 Sigma-W factor strong 44 87
  Shewanella oneidensis MR-1 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 41 86
  Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 40 90
  Shewanella sp. ANA-3 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 42 84
o Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 41 88
o Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 39 90
o Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 40 89
  Bosea sp. OAE506 ABIE41_RS10280 sigma-70 family RNA polymerase sigma factor insig. 44 87
o Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 39 92
o Marinobacter adhaerens HP15 HP15_270 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 39 86
o Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 38 88
o Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 35 92
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 37 87
o Xanthobacter sp. DMC5 GFF3078 ECF RNA polymerase sigma factor RpoE insig. 37 79
  Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 38 87
o Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 35 93
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 35 93
o Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 35 89
o Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 35 89
o Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 35 95
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 33 89
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 35 87
o Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 33 89
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 33 89
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 34 87
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 38 85
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02680 RNA polymerase subunit sigma-70 insig. 31 95
  Azospirillum brasilense Sp245 AZOBR_RS21190 RNA polymerase sigma factor RpoE insig. 31 80
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24900 RNA polymerase subunit sigma-70 insig. 31 90
o Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 32 97
o Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 32 85
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18855 RNA polymerase sigma factor insig. 32 88
o Cellulophaga baltica 18 M666_RS08870 RNA polymerase sigma factor insig. 30 88
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 31 97
o Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 31 87
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 28 86
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 29 86
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 28 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 28 86
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 29 98
o Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 29 90
o Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 28 87
  Cellulophaga baltica 18 M666_RS18525 RNA polymerase sigma factor insig. 26 88
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 27 89
o Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 27 89
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 30 91
o Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 26 96
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 29 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00160 hypothetical protein insig. 31 92
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 29 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 28 93
o Pseudomonas segetis P6 ACVTMO_RS06730 sigma-70 family RNA polymerase sigma factor insig. 25 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 29 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12920 RNA polymerase sigma-70 factor cofit 29 84
o Agrobacterium fabrum C58 Atu1982 sigma factor insig. 32 89
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 30 86
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3601.1 RNA polymerase sigma-70 factor insig. 27 86
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 30 79
  Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 27 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 31 79
o Synechococcus elongatus PCC 7942 Synpcc7942_2004 sigI RNA polymerase sigma factor insig. 30 82
  Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 27 86
  Ralstonia solanacearum PSI07 RPSI07_RS10230 RNA polymerase sigma factor no data 30 80
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 29 88
  Ralstonia solanacearum GMI1000 RS_RS14950 RNA polymerase sigma factor no data 31 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04785 sigma-70 family RNA polymerase sigma factor insig. 31 87
o Pseudomonas aeruginosa MRSN321 DY961_RS02510 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI insig. 31 87
o Pseudomonas aeruginosa PUPa3 DQ20_RS33080 sbrI;inference=COORDINATES ECF family RNA polymerase sigma factor SbrI insig. 31 87
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 31 79
  Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 24 98
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 33 74
  Pseudomonas orientalis W4I3 QF045_RS06435 RNA polymerase sigma factor insig. 32 76
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 32 81
  Pseudomonas aeruginosa PA14 IKLFDK_14715 ECF family RNA polymerase sigma factor SbrI insig. 31 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 79
o Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 28 87
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 30 88
o Phocaeicola dorei CL03T12C01 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor insig. 30 84
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 30 88
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 27 88
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00902 ECF RNA polymerase sigma factor SigC insig. 32 76
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 31 76
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 30 90
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 28 90
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 26 84
  Pseudomonas simiae WCS417 PS417_03450 RNA polymerase sigma factor insig. 32 76
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 29 88
  Bacteroides thetaiotaomicron VPI-5482 BT3190 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 89
  Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 28 87
  Rhodanobacter sp. FW510-T8 OKGIIK_14780 RNA polymerase subunit sigma-70 insig. 31 87
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 29 84
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 32 88
  Pseudomonas fluorescens SBW25 PFLU_RS03525 RNA polymerase sigma factor insig. 32 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS03525 RNA polymerase sigma factor insig. 32 76
o Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 25 87
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 29 84
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 28 82
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 27 85