Homologs of ABZR87_RS11200 from Ralstonia sp. UNC404CL21Col

ribosome maturation factor RimP
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

125 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 100 100
o Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 94 100
o Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 94 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 94 100
o Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 94 100
o Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 78 100
o Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 59 97
o Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 59 97
o Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 59 97
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 58 97
o Collimonas humicola GW821-FHT01A05 MPMX01_04012 Ribosome maturation factor RimP sig. 56 96
o Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 51 96
o Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 52 93
o Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 47 93
o Variovorax sp. OAS795 ABID97_RS16495 ribosome maturation factor RimP no data 38 98
o Variovorax sp. SCN45 GFF224 Bacterial ribosome SSU maturation protein RimP no data 37 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4341 FIG000325: clustered with transcription termination protein NusA strong 36 98
o Acidovorax sp. GW101-3H11 Ac3H11_2869 FIG000325: clustered with transcription termination protein NusA no data 38 93
o Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 44 90
o Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 44 90
o Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 43 90
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS17255 rimP ribosome maturation factor RimP strong 43 90
o Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 43 90
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13925 rimP ribosome maturation factor RimP no data 44 90
o Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 44 90
o Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 43 90
o Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 43 90
o Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 43 90
o Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 43 90
o Erwinia amylovora T8 OLJFJH_07230 ribosome maturation factor RimP no data 43 90
o Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 44 90
o Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 42 90
o Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 42 90
o Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC100 OKFHMN_18100 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 42 90
o Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 42 90
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 42 90
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 42 90
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 42 90
  Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 42 90
o Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 42 90
o Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 41 90
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 43 88
o Methylophilus sp. DMC18 GFF2850 Ribosome maturation factor RimP no data 41 93
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 42 88
o Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 40 90
o Klebsiella pneumoniae MKP103 KDGMDA_05910 ribosome maturation factor RimP no data 43 84
o Klebsiella pneumoniae MRSN742743 GJGHJB_00530 rimP ribosome maturation factor RimP no data 43 84
  Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 43 69
  Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 46 67
o Pseudomonas segetis P6 ACVTMO_RS05945 rimP ribosome maturation factor RimP no data 38 93
  Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 44 67
  Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 44 67
  Pseudomonas sp. SVBP6 COO64_RS15180 rimP ribosome maturation factor RimP no data 41 67
  Pseudomonas sp. DMC3 GFF4986 Ribosome maturation factor RimP no data 44 67
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 44 67
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04947 Ribosome maturation factor RimP no data 43 67
  Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 44 67
  Pseudomonas sp. FW215-L2 GFF623 Ribosome maturation factor RimP no data 43 67
  Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 43 67
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 43 67
  Pseudomonas orientalis W4I3 QF045_RS26235 ribosome maturation factor RimP no data 43 67
  Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 43 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 43 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 43 67
  Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 43 67
  Pseudomonas aeruginosa MRSN321 PFGADD_04973 rimP ribosome maturation factor RimP no data 46 67
  Pseudomonas aeruginosa PA14 IKLFDK_29870 ribosome maturation factor RimP no data 46 67
  Pseudomonas aeruginosa PUPa3 NPBIFN_05050 rimP ribosome maturation factor RimP no data 46 67
  Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 42 70
  Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 42 70
  Pseudomonas protegens RBAN4 FABNJH_04380 rimP ribosome maturation factor RimP no data 42 68
  Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 41 70
  Pseudomonas sp. BP01 JOY50_RS26825 rimP ribosome maturation factor RimP no data 43 68
o Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 35 92
o Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 36 90
  Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 39 68
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 39 68
o Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 38 90
  Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 41 67
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 37 88
  Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 45 64
o Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 37 91
  Xanthobacter sp. DMC5 GFF2298 Ribosome maturation factor RimP no data 41 61
  Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 37 83
  Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP no data 40 86
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 35 90
  Sphingobium sp. HT1-2 GFF2359 Bacterial ribosome SSU maturation protein RimP no data 42 70
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09060 ribosome maturation factor RimP no data 37 90
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 33 88
  Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 35 98
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 35 98
  Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 35 75
  Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 39 65
  Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 38 67
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 39 64
  Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 36 67
  Fusobacterium nucleatum SB010 HUW76_01020 ribosome maturation factor RimP strong 32 70
  Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 33 70
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 37 67
  Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 36 67
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2150 Uncharacterized protein conserved in bacteria no data 37 70
  Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 36 65
  Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 36 65
  Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 31 90
  Acinetobacter baumannii LAC-4 RR41_RS17310 ribosome maturation factor RimP no data 31 90
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13990 ribosome maturation factor RimP no data 31 90
  Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 29 96
  Bacteroides thetaiotaomicron VPI-5482 BT3402 conserved hypothetical protein (NCBI ptt file) no data 31 90
  Bacteroides stercoris CC31F HMPREF1181_RS02570 ribosome assembly cofactor RimP no data 29 73
  Phocaeicola dorei CL03T12C01 ABI39_RS04610 ribosome assembly cofactor RimP no data 29 73
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12185 ribosome assembly cofactor RimP no data 29 73
  Bacteroides ovatus ATCC 8483 BACOVA_01904 hypothetical protein no data 29 90
  Desulfovibrio vulgaris Miyazaki F DvMF_2516 protein of unknown function DUF150 (RefSeq) sig. 39 37
  Synechocystis sp000284455 PCC 6803 SGL_RS02465 ribosome maturation factor RimP no data 34 54
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22730 ribosome assembly cofactor RimP no data 28 75
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0707 Uncharacterized protein conserved in bacteria no data 29 67
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03080 ribosome assembly cofactor RimP no data 32 63
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14455 ribosome maturation factor strong 40 37
  Synechococcus elongatus PCC 7942 Synpcc7942_2023 hypothetical protein strong 34 44