Homologs of rnhA from Shewanella oneidensis MR-1

rnhA: ribonuclease HI (NCBI ptt file)
SEED: Ribonuclease HI (EC 3.1.26.4)
KEGG: ribonuclease HI

124 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2560 rnhA ribonuclease HI (NCBI ptt file) no data 100 100
o Shewanella sp. ANA-3 Shewana3_2366 rnhA ribonuclease H (RefSeq) insig. 95 100
o Shewanella amazonensis SB2B Sama_1881 rnhA ribonuclease H (RefSeq) strong 81 98
o Shewanella loihica PV-4 Shew_2112 ribonuclease H (RefSeq) insig. 77 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4046 Ribonuclease HI (EC 3.1.26.4) no data 71 98
o Klebsiella michiganensis M5al BWI76_RS05450 ribonuclease HI strong 70 98
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_15390 rnhA ribonuclease HI no data 69 98
o Erwinia tracheiphila SCR3 LU632_RS01090 rnhA ribonuclease HI insig. 69 98
o Escherichia fergusonii Becca EFB2_03829 Ribonuclease HI sig. 70 97
o Enterobacter sp. TBS_079 MPMX20_00899 Ribonuclease HI insig. 69 97
o Alteromonas macleodii MIT1002 MIT1002_01690 Ribonuclease HI cofit 69 95
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03447 Ribonuclease HI insig. 69 97
o Erwinia amylovora T8 OLJFJH_18630 ribonuclease HI insig. 68 98
o Escherichia coli BL21 ECD_00207 ribonuclease HI no data 69 97
o Escherichia coli ECOR27 NOLOHH_02315 rnhA ribonuclease HI strong 69 97
o Escherichia coli ECOR38 HEPCGN_07910 rnhA ribonuclease HI insig. 69 97
o Escherichia coli ECRC100 OKFHMN_09970 rnhA ribonuclease HI insig. 69 97
o Escherichia coli ECRC101 MCAODC_00485 rnhA ribonuclease HI insig. 69 97
o Escherichia coli ECRC102 NIAGMN_07820 rnhA ribonuclease HI no data 69 97
o Escherichia coli ECRC62 BNILDI_09355 rnhA ribonuclease HI insig. 69 97
o Escherichia coli ECRC98 JDDGAC_13565 rnhA ribonuclease HI sig. 69 97
o Escherichia coli ECRC99 KEDOAH_18185 rnhA ribonuclease HI no data 69 97
o Escherichia coli Nissle 1917 ECOLIN_RS01170 ribonuclease HI no data 69 97
o Escherichia coli BW25113 b0214 rnhA ribonuclease H (NCBI) no data 69 97
o Enterobacter asburiae PDN3 EX28DRAFT_2680 Ribonuclease HI no data 69 97
o Rahnella sp. WP5 EX31_RS21190 ribonuclease HI cofit 68 97
o Vibrio cholerae E7946 ATCC 55056 CSW01_11385 ribonuclease HI no data 67 97
o Serratia liquefaciens MT49 IAI46_04145 ribonuclease HI no data 67 98
o Dickeya dadantii 3937 DDA3937_RS16050 ribonuclease HI insig. 67 97
o Klebsiella pneumoniae MKP103 KDGMDA_13700 ribonuclease HI no data 68 98
o Klebsiella pneumoniae MRSN742743 KFA93_RS04580 rnhA;go_function=nucleic ribonuclease HI no data 68 98
o Dickeya dianthicola 67-19 HGI48_RS16170 ribonuclease HI insig. 67 97
o Pantoea sp. MT58 IAI47_15330 ribonuclease HI no data 66 97
o Pectobacterium carotovorum WPP14 HER17_RS05465 ribonuclease HI no data 67 97
o Dickeya dianthicola ME23 DZA65_RS17255 ribonuclease HI insig. 66 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS15640 rnhA ribonuclease HI no data 66 97
o Bosea sp. OAE506 ABIE41_RS23050 ribonuclease HI no data 61 86
o Paraburkholderia sabiae LMG 24235 QEN71_RS04750 ribonuclease HI no data 64 85
o Xanthobacter sp. DMC5 GFF1720 Ribonuclease HI no data 59 87
o Azospirillum sp. SherDot2 MPMX19_01081 Ribonuclease HI no data 60 86
o Burkholderia phytofirmans PsJN BPHYT_RS14220 ribonuclease H no data 61 85
o Sinorhizobium meliloti 1021 SMc00018 ribonuclease H no data 60 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04397 RNase HI no data 60 85
o Paraburkholderia graminis OAS925 ABIE53_003009 ribonuclease HI no data 60 85
o Desulfovibrio vulgaris Miyazaki F DvMF_2669 rnhA ribonuclease H (RefSeq) strong 55 96
o Desulfovibrio vulgaris Hildenborough JW710 DVU0689 rnhA ribonuclease HI (TIGR) insig. 54 95
o Rhodopseudomonas palustris CGA009 TX73_022115 ribonuclease HI no data 59 90
o Azospirillum brasilense Sp245 AZOBR_RS10505 ribonuclease H insig. 60 84
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4033.1 Ribonuclease HI (EC 3.1.26.4) no data 58 90
o Agrobacterium fabrum C58 Atu0776 ribonuclease H no data 58 89
o Rhodanobacter sp. FW510-T8 OKGIIK_07990 rnhA ribonuclease HI no data 57 87
o Rhizobium sp. OAE497 ABIE40_RS04115 ribonuclease HI insig. 58 87
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05650 ribonuclease HI no data 58 91
o Herbaspirillum seropedicae SmR1 HSERO_RS17110 ribonuclease H strong 55 88
o Lysobacter sp. OAE881 ABIE51_RS14100 ribonuclease HI no data 54 89
o Rhodanobacter denitrificans MT42 LRK55_RS16500 ribonuclease HI no data 56 87
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16775 ribonuclease HI no data 56 87
o Caulobacter crescentus NA1000 CCNA_03476 ribonuclease HI strong 57 91
o Caulobacter crescentus NA1000 Δfur CCNA_03476 ribonuclease HI cofit 57 91
o Magnetospirillum magneticum AMB-1 AMB_RS03905 ribonuclease H cofit 54 85
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07275 ribonuclease HI no data 55 91
o Sphingobium sp. HT1-2 GFF1973 Ribonuclease HI (EC 3.1.26.4) cofit 54 85
o Rhodospirillum rubrum S1H Rru_A3054 Ribonuclease H (NCBI) insig. 51 94
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS12095 ribonuclease HI no data 55 87
o Pseudomonas sp. S08-1 OH686_03570 Ribonuclease HI no data 54 89
o Phaeobacter inhibens DSM 17395 PGA1_c00930 ribonuclease H no data 55 85
o Kangiella aquimarina DSM 16071 B158DRAFT_1063 Ribonuclease HI no data 54 89
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4259 Ribonuclease HI (EC 3.1.26.4) no data 58 86
o Pseudomonas putida KT2440 PP_4142 ribonuclease H no data 55 84
o Pseudomonas sp. DMC3 GFF1024 Ribonuclease HI no data 56 84
o Pseudomonas sp. BP01 JOY50_RS07080 rnhA ribonuclease HI no data 55 84
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3252 Ribonuclease HI no data 53 91
o Pseudomonas sp. SVBP6 COO64_RS19260 rnhA ribonuclease HI no data 56 84
o Dechlorosoma suillum PS Dsui_2482 ribonuclease HI no data 53 91
o Ralstonia solanacearum GMI1000 RS_RS07595 ribonuclease H no data 49 95
o Acidovorax sp. GW101-3H11 Ac3H11_480 Ribonuclease HI (EC 3.1.26.4) no data 57 86
o Marinobacter adhaerens HP15 HP15_1803 ribonuclease Hi chain A-like protein no data 55 84
o Pseudomonas sp. RS175 PFR28_01554 Ribonuclease HI no data 54 84
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS02225 ribonuclease HI no data 50 89
o Ralstonia solanacearum UW163 UW163_RS15535 ribonuclease HI no data 50 89
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3338 Ribonuclease HI (EC 3.1.26.4) no data 52 87
o Pseudomonas segetis P6 ACVTMO_RS13915 rnhA ribonuclease HI no data 52 91
o Dinoroseobacter shibae DFL-12 Dshi_0182 ribonuclease H (RefSeq) no data 54 85
o Ralstonia sp. UNC404CL21Col ABZR87_RS14175 ribonuclease HI no data 50 89
o Ralstonia solanacearum PSI07 RPSI07_RS15220 ribonuclease HI no data 50 89
o Pseudomonas fluorescens FW300-N2C3 AO356_24490 ribonuclease H no data 52 87
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_589 Ribonuclease HI (EC 3.1.26.4) no data 52 87
o Variovorax sp. SCN45 GFF1119 Ribonuclease HI (EC 3.1.26.4) strong 55 89
o Pseudomonas stutzeri RCH2 Psest_2073 Ribonuclease HI no data 54 84
o Pseudomonas aeruginosa PA14 IKLFDK_08825 ribonuclease HI no data 52 91
o Pseudomonas aeruginosa PUPa3 DQ20_RS54885 rnhA;go_function=nucleic ribonuclease HI no data 52 91
o Pseudomonas fluorescens FW300-N2E3 AO353_23500 ribonuclease H no data 51 87
o Pseudomonas aeruginosa MRSN321 DY961_RS20805 rnhA;go_function=nucleic ribonuclease HI no data 52 91
o Variovorax sp. OAS795 ABID97_RS14740 ribonuclease HI no data 56 87
o Pseudomonas protegens RBAN4 FABNJH_16890 rnhA ribonuclease HI no data 54 84
o Pseudomonas syringae pv. syringae B728a Psyr_1763 RNase HI no data 53 84
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1763 RNase HI no data 53 84
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4598 Ribonuclease HI (EC 3.1.26.4) no data 53 84
o Pseudomonas orientalis W4I3 QF045_RS14765 ribonuclease HI no data 51 87
o Pseudomonas fluorescens SBW25 PFLU_RS12920 ribonuclease HI no data 51 87
o Pseudomonas fluorescens SBW25-INTG PFLU_RS12920 ribonuclease HI no data 51 87
o Pseudomonas lactucae CFBP13502 GEMAOFIL_02691 Ribonuclease HI no data 51 87
o Pseudomonas simiae WCS417 PS417_12230 ribonuclease H no data 51 87
o Cupriavidus basilensis FW507-4G11 RR42_RS13580 ribonuclease H no data 50 88
o Castellaniella sp019104865 MT123 ABCV34_RS10475 ribonuclease HI no data 50 88
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1813 Ribonuclease HI insig. 50 97
o Synechocystis sp000284455 PCC 6803 SGL_RS15305 ribonuclease HI strong 45 94
o Methylophilus sp. DMC18 GFF1319 Ribonuclease H no data 51 83
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00830 ribonuclease HI no data 46 96
  Acinetobacter radioresistens SK82 MPMX26_02275 Ribonuclease H cofit 44 96
  Synechococcus elongatus PCC 7942 Synpcc7942_2183 rnhA RNase HI sig. 43 90
  Acinetobacter baumannii LAC-4 RR41_RS09305 DNA polymerase III subunit epsilon no data 44 91
o Cellulophaga baltica 18 M666_RS04100 ribonuclease HI strong 45 94
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS05225 ribonuclease HI no data 45 96
  Sinorhizobium meliloti 1021 SMc02327 ribonuclease HI protein insig. 43 86
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS09645 ribonuclease HI no data 50 96
  Alteromonas macleodii MIT1002 MIT1002_02476 Ribonuclease HI insig. 42 91
  Bifidobacterium breve UCC2003 BBR_RS18725 ribonuclease HI strong 40 87
  Variovorax sp. OAS795 ABID97_RS09575 ribonuclease H insig. 39 87
  Agrobacterium fabrum C58 Atu3177 ribonuclease H insig. 31 90
  Vibrio cholerae E7946 ATCC 55056 CSW01_02640 ribonuclease H insig. 32 87
  Rhizobium sp. OAE497 ABIE40_RS07515 ribonuclease H sig. 34 84
  Shewanella loihica PV-4 Shew_1682 ribonuclease H (RefSeq) insig. 30 91
  Mycobacterium tuberculosis H37Rv Rv2228c Multifunctional protein. Has RNASE H,alpha-ribazole phosphatase, and acid phosphatase activities. no data 28 84