Conservation of cofitness between PP_0293 and PP_5128 in Pseudomonas putida KT2440

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0293 Imidazole glycerol phosphate synthase subunit HisF 1.0 PP_5128 Dihydroxy-acid dehydratase 0.84 4
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_09795 imidazole glycerol phosphate synthase subunit HisF 0.96 AO356_13250 dihydroxy-acid dehydratase 0.69 20
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.96 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Pseudomonas sp. RS175 0.98 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF 0.96 PFR28_04278 Dihydroxy-acid dehydratase 0.57 5
Pseudomonas fluorescens SBW25 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.96 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.96 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.96 PFLU_RS28535 dihydroxy-acid dehydratase 0.54 22
Pseudomonas simiae WCS417 0.97 PS417_01580 imidazole glycerol phosphate synthase 0.96 PS417_26890 dihydroxy-acid dehydratase 0.77 13
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_12090 imidazole glycerol phosphate synthase subunit HisF 0.97 AO353_08345 dihydroxy-acid dehydratase 0.84 7
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.97 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.81 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.94 Psyr_0469 dihydroxyacid dehydratase
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.94 Psyr_0469 dihydroxyacid dehydratase 0.83 4
Pseudomonas stutzeri RCH2 0.92 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit 0.94 Psest_0234 dihydroxy-acid dehydratase
Pseudomonas sp. S08-1 0.92 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit 0.93 OH686_14100 dihydroxy-acid dehydratase 0.81 5
Marinobacter adhaerens HP15 0.82 HP15_3009 protein containing histidine biosynthesis, HisF domain 0.78 HP15_595 dihydroxy-acid dehydratase
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF 0.80 H281DRAFT_05312 dihydroxyacid dehydratase
Paraburkholderia graminis OAS925 0.77 ABIE53_003695 cyclase 0.80 ABIE53_006513 dihydroxy-acid dehydratase
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF 0.71 BPHYT_RS10100 dihydroxy-acid dehydratase 0.75 42
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF 0.80 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS06815 imidazole glycerol phosphate synthase subunit HisF 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase
Ralstonia solanacearum UW163 0.76 UW163_RS06800 imidazole glycerol phosphate synthase subunit HisF 0.29 UW163_RS09135 dihydroxy-acid dehydratase
Ralstonia solanacearum PSI07 0.76 RPSI07_RS10420 imidazole glycerol phosphate synthase subunit HisF 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase
Ralstonia solanacearum GMI1000 0.76 RS_RS14760 imidazole glycerol phosphate synthase subunit HisF 0.30 RS_RS12105 dihydroxy-acid dehydratase
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS18885 imidazole glycerol phosphate synthase 0.30 RR42_RS16210 dihydroxy-acid dehydratase
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS02470 imidazole glycerol phosphate synthase subunit HisF 0.81 ABZR87_RS00240 dihydroxy-acid dehydratase
Acinetobacter radioresistens SK82 0.75 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF 0.28 MPMX26_03019 Dihydroxy-acid dehydratase 0.83 34
Castellaniella sp019104865 MT123 0.73 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Dechlorosoma suillum PS 0.72 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit 0.75 Dsui_1122 dihydroxy-acid dehydratase
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS20315 imidazole glycerol phosphate synthase 0.72 HSERO_RS02650 dihydroxy-acid dehydratase 0.84 10
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.65 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Azospirillum brasilense Sp245 0.69 AZOBR_RS01685 imidazole glycerol phosphate synthase 0.75 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Variovorax sp. OAS795 0.69 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF 0.31 ABID97_RS17500 dihydroxy-acid dehydratase
Azospirillum sp. SherDot2 0.68 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF 0.73 MPMX19_05356 Dihydroxy-acid dehydratase
Variovorax sp. SCN45 0.68 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Sinorhizobium meliloti 1021 0.67 SMc02569 imidazole glycerol phosphate synthase subunit HisF 0.77 SMc04045 dihydroxy-acid dehydratase 0.90 9
Magnetospirillum magneticum AMB-1 0.66 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit 0.70 AMB_RS12770 dihydroxy-acid dehydratase
Rhodospirillum rubrum S1H 0.65 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.82 14
Agrobacterium fabrum C58 0.64 Atu0039 imidazoleglycerol-phosphate synthase cyclase 0.76 Atu1918 dihydroxy-acid dehydratase
Dinoroseobacter shibae DFL-12 0.64 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq) 0.29 Dshi_0129 dihydroxy-acid dehydratase (RefSeq)
Rhizobium sp. OAE497 0.63 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF 0.76 ABIE40_RS08005 dihydroxy-acid dehydratase 0.91 40
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.80 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9)
Rhodopseudomonas palustris CGA009 0.62 TX73_001625 imidazole glycerol phosphate synthase subunit HisF 0.74 TX73_007515 dihydroxy-acid dehydratase
Bosea sp. OAE506 0.61 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase
Phaeobacter inhibens DSM 17395 0.61 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF 0.73 PGA1_c29490 dihydroxy-acid dehydratase LivD
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.98 19
Caulobacter crescentus NA1000 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.98 7
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Methanococcus maripaludis JJ 0.57 MMJJ_RS05490 imidazole glycerol phosphate synthase subunit HisF 0.33 MMJJ_RS03675 dihydroxy-acid dehydratase
Methanococcus maripaludis S2 0.56 MMP_RS08865 imidazole glycerol phosphate synthase subunit HisF 0.33 MMP_RS01700 dihydroxy-acid dehydratase
Mycobacterium tuberculosis H37Rv 0.56 Rv1605 Probable cyclase HisF 0.32 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad)
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.37 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.85 28
Bifidobacterium breve UCC2003 0.55 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF 0.56 BBR_RS17635 dihydroxy-acid dehydratase low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.54 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU0286 hisF imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) 0.37 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.82 25
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_2087 hisF imidazole glycerol phosphate synthase subunit HisF 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase
Bacteroides ovatus ATCC 8483 0.52 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit 0.60 BACOVA_03302 dihydroxy-acid dehydratase 0.94 23
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit 0.28 Echvi_2055 dihydroxy-acid dehydratase 0.91 11
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF 0.62 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.91 15
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF 0.62 ABI39_RS12715 dihydroxy-acid dehydratase 0.82 10
Bacteroides thetaiotaomicron VPI-5482 0.51 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.61 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.87 9
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS11070 imidazole glycerol phosphate synthase subunit HisF 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.87 42
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF 0.63 HMPREF1078_RS16695 dihydroxy-acid dehydratase low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS06855 imidazole glycerol phosphate synthase subunit HisF 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase 0.74 8
Lysobacter sp. OAE881 0.43 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.89 14
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.87 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.71 48
Pectobacterium carotovorum WPP14 0.43 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF 0.73 HER17_RS01075 dihydroxy-acid dehydratase 0.98 3
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit 0.77 CSW01_00140 dihydroxy-acid dehydratase low > 62
Rahnella sp. WP5 0.42 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF 0.69 EX31_RS15005 dihydroxy-acid dehydratase 0.98 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF 0.74 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli Nissle 1917 0.42 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF 0.74 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli BW25113 0.42 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) 0.74 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.97 2
Escherichia coli ECRC101 0.42 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 OKFHMN_14640 ilvD dihydroxy-acid dehydratase
Escherichia coli ECOR38 0.42 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC102 0.42 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 NIAGMN_12395 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC99 0.42 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 KEDOAH_13510 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC62 0.42 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 BNILDI_04750 ilvD dihydroxy-acid dehydratase
Escherichia fergusonii Becca 0.42 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF 0.74 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Pantoea sp. MT58 0.42 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF 0.73 IAI47_01035 dihydroxy-acid dehydratase 0.98 9
Escherichia coli ECRC98 0.42 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 JDDGAC_18260 ilvD dihydroxy-acid dehydratase
Escherichia coli ECRC101 0.42 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 MCAODC_05145 ilvD dihydroxy-acid dehydratase
Escherichia coli ECOR27 0.42 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF 0.74 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Dickeya dadantii 3937 0.41 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase 0.89 24
Enterobacter sp. TBS_079 0.41 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF 0.73 MPMX20_04499 Dihydroxy-acid dehydratase 0.96 6
Escherichia coli BL21 0.41 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH 0.74 ECD_03649 dihydroxyacid dehydratase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.73 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Serratia liquefaciens MT49 0.41 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF 0.72 IAI46_24345 dihydroxy-acid dehydratase low > 86
Erwinia tracheiphila SCR3 0.41 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF 0.72 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 74
Dickeya dianthicola 67-19 0.41 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF 0.73 HGI48_RS20295 dihydroxy-acid dehydratase
Dickeya dianthicola ME23 0.41 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF 0.72 DZA65_RS21335 dihydroxy-acid dehydratase 0.81 18
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit 0.73 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.79 33
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS10715 imidazole glycerol phosphate synthase subunit HisF 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.99 11
Klebsiella michiganensis M5al 0.40 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit 0.74 BWI76_RS00975 dihydroxy-acid dehydratase 0.89 7
Alteromonas macleodii MIT1002 0.40 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF 0.78 MIT1002_04041 Dihydroxy-acid dehydratase 0.95 21
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS06705 imidazole glycerol phosphate synthase subunit HisF 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.92 20
Shewanella sp. ANA-3 0.39 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.74 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.96 1
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS01580 imidazole glycerol phosphate synthase subunit HisF 0.25 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Shewanella oneidensis MR-1 0.39 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) 0.74 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.98 3
Shewanella amazonensis SB2B 0.38 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.74 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.96 7
Rhodanobacter denitrificans MT42 0.38 LRK55_RS01360 imidazole glycerol phosphate synthase subunit HisF 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_04975 hisF imidazole glycerol phosphate synthase subunit HisF 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Shewanella loihica PV-4 0.36 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.74 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.97 22

Not shown: 1 genomes with orthologs for PP_0293 only; 1 genomes with orthologs for PP_5128 only