Conservation of cofitness between PP_0293 and PP_1988 in Pseudomonas putida KT2440

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0293 Imidazole glycerol phosphate synthase subunit HisF 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.81 10
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pseudomonas sp. RS175 0.98 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.56 8
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_09795 imidazole glycerol phosphate synthase subunit HisF 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.65 32
Pseudomonas fluorescens SBW25 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.41 83
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.63 9
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_12090 imidazole glycerol phosphate synthase subunit HisF 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.82 12
Pseudomonas simiae WCS417 0.97 PS417_01580 imidazole glycerol phosphate synthase 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.78 10
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 13
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.91 Psyr_1985 3-isopropylmalate dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.80 14
Pseudomonas stutzeri RCH2 0.92 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit 0.87 Psest_2589 3-isopropylmalate dehydrogenase
Pseudomonas sp. S08-1 0.92 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit 0.87 OH686_04470 3-isopropylmalate dehydrogenase 0.80 6
Marinobacter adhaerens HP15 0.82 HP15_3009 protein containing histidine biosynthesis, HisF domain 0.73 HP15_1832 3-isopropylmalate dehydrogenase
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.86 18
Paraburkholderia graminis OAS925 0.77 ABIE53_003695 cyclase 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.79 56
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS06815 imidazole glycerol phosphate synthase subunit HisF 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase
Ralstonia solanacearum UW163 0.76 UW163_RS06800 imidazole glycerol phosphate synthase subunit HisF 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase
Ralstonia solanacearum PSI07 0.76 RPSI07_RS10420 imidazole glycerol phosphate synthase subunit HisF 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase
Ralstonia solanacearum GMI1000 0.76 RS_RS14760 imidazole glycerol phosphate synthase subunit HisF 0.64 RS_RS09990 3-isopropylmalate dehydrogenase
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS02470 imidazole glycerol phosphate synthase subunit HisF 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS18885 imidazole glycerol phosphate synthase 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase
Acinetobacter radioresistens SK82 0.75 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 0.90 18
Castellaniella sp019104865 MT123 0.73 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Dechlorosoma suillum PS 0.72 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit 0.68 Dsui_3198 3-isopropylmalate dehydrogenase
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS20315 imidazole glycerol phosphate synthase 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.85 9
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Azospirillum brasilense Sp245 0.69 AZOBR_RS01685 imidazole glycerol phosphate synthase 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.85 19
Variovorax sp. OAS795 0.69 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase
Azospirillum sp. SherDot2 0.68 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase
Variovorax sp. SCN45 0.68 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Sinorhizobium meliloti 1021 0.67 SMc02569 imidazole glycerol phosphate synthase subunit HisF 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.88 24
Magnetospirillum magneticum AMB-1 0.66 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase
Rhodospirillum rubrum S1H 0.65 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.83 13
Agrobacterium fabrum C58 0.64 Atu0039 imidazoleglycerol-phosphate synthase cyclase 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.77 19
Dinoroseobacter shibae DFL-12 0.64 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq) 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq)
Rhizobium sp. OAE497 0.63 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.94 23
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Rhodopseudomonas palustris CGA009 0.62 TX73_001625 imidazole glycerol phosphate synthase subunit HisF 0.53 TX73_001175 3-isopropylmalate dehydrogenase
Bosea sp. OAE506 0.61 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase
Phaeobacter inhibens DSM 17395 0.61 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.96 34
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.51 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.97 11
Methanococcus maripaludis JJ 0.57 MMJJ_RS05490 imidazole glycerol phosphate synthase subunit HisF 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase
Methanococcus maripaludis S2 0.56 MMP_RS08865 imidazole glycerol phosphate synthase subunit HisF 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase
Mycobacterium tuberculosis H37Rv 0.56 Rv1605 Probable cyclase HisF 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_2304 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.92 19
Bifidobacterium breve UCC2003 0.55 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.54 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit 0.43 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.53 DVU0286 hisF imidazoleglycerol phosphate synthase, cyclase subunit (TIGR) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.86 18
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_2087 hisF imidazole glycerol phosphate synthase subunit HisF 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit 0.46 Echvi_2062 3-isopropylmalate dehydrogenase
Bacteroides ovatus ATCC 8483 0.52 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit 0.42 BACOVA_04600 3-isopropylmalate dehydrogenase 0.94 20
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF 0.43 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.68 61
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF 0.43 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.78 27
Bacteroides thetaiotaomicron VPI-5482 0.51 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.43 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.81 33
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS11070 imidazole glycerol phosphate synthase subunit HisF 0.44 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.90 34
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF 0.45 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.92 46
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS06855 imidazole glycerol phosphate synthase subunit HisF 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2291 imidazoleglycerol phosphate synthase, cyclase subunit 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Lysobacter sp. OAE881 0.43 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.86 35
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.92 4
Pectobacterium carotovorum WPP14 0.43 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.97 17
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit 0.53 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Rahnella sp. WP5 0.42 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.98 2
Escherichia coli ECRC101 0.42 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC62 0.42 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase
Escherichia fergusonii Becca 0.42 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECRC101 0.42 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECOR38 0.42 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Pantoea sp. MT58 0.42 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.98 11
Escherichia coli ECOR27 0.42 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC102 0.42 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC98 0.42 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase
Escherichia coli Nissle 1917 0.42 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia coli ECRC99 0.42 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase
Escherichia coli BW25113 0.42 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.95 9
Dickeya dadantii 3937 0.41 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Enterobacter sp. TBS_079 0.41 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.90 30
Escherichia coli BL21 0.41 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Erwinia tracheiphila SCR3 0.41 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.81 23
Serratia liquefaciens MT49 0.41 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF 0.53 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.81 27
Dickeya dianthicola 67-19 0.41 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase
Dickeya dianthicola ME23 0.41 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.77 28
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS10715 imidazole glycerol phosphate synthase subunit HisF 0.43 A4249_RS09995 3-isopropylmalate dehydrogenase 1.00 6
Klebsiella michiganensis M5al 0.40 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.84 29
Alteromonas macleodii MIT1002 0.40 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.92 43
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS06705 imidazole glycerol phosphate synthase subunit HisF 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.88 59
Shewanella sp. ANA-3 0.39 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.94 13
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS01580 imidazole glycerol phosphate synthase subunit HisF 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Shewanella oneidensis MR-1 0.39 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.98 12
Shewanella amazonensis SB2B 0.38 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.93 29
Rhodanobacter denitrificans MT42 0.38 LRK55_RS01360 imidazole glycerol phosphate synthase subunit HisF 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_04975 hisF imidazole glycerol phosphate synthase subunit HisF 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Shewanella loihica PV-4 0.36 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.97 16

Not shown: 0 genomes with orthologs for PP_0293 only; 1 genomes with orthologs for PP_1988 only