Conservation of cofitness between PP_5128 and PP_0966 in Pseudomonas putida KT2440

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5128 Dihydroxy-acid dehydratase 1.0 PP_0966 Histidinol dehydrogenase 0.93 5
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_08345 dihydroxy-acid dehydratase 0.92 AO353_05110 histidinol dehydrogenase 0.91 17
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.91 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.84 34
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_13250 dihydroxy-acid dehydratase 0.90 AO356_06965 histidinol dehydrogenase 0.90 30
Pseudomonas sp. RS175 0.96 PFR28_04278 Dihydroxy-acid dehydratase 0.90 PFR28_00187 Histidinol dehydrogenase 0.82 3
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.90 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) 0.78 30
Pseudomonas simiae WCS417 0.96 PS417_26890 dihydroxy-acid dehydratase 0.91 PS417_04420 histidinol dehydrogenase 0.89 14
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.92 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) — —
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS28535 dihydroxy-acid dehydratase 0.92 PFLU_RS04470 histidinol dehydrogenase 0.73 18
Pseudomonas fluorescens SBW25 0.96 PFLU_RS28535 dihydroxy-acid dehydratase 0.92 PFLU_RS04470 histidinol dehydrogenase 0.74 10
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_0469 dihydroxyacid dehydratase 0.89 Psyr_4133 histidinol dehydrogenase 0.92 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_0469 dihydroxyacid dehydratase 0.89 Psyr_4133 histidinol dehydrogenase 0.91 17
Pseudomonas stutzeri RCH2 0.94 Psest_0234 dihydroxy-acid dehydratase 0.85 Psest_3298 histidinol dehydrogenase — —
Pseudomonas sp. S08-1 0.93 OH686_14100 dihydroxy-acid dehydratase 0.85 OH686_08470 Histidinol dehydrogenase 0.81 16
Xanthomonas campestris pv. campestris strain 8004 0.87 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.35 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.67 74
Ralstonia sp. UNC404CL21Col 0.81 ABZR87_RS00240 dihydroxy-acid dehydratase 0.62 ABZR87_RS02500 histidinol dehydrogenase — —
Acidovorax sp. GW101-3H11 0.80 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.63 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) — —
Paraburkholderia graminis OAS925 0.80 ABIE53_006513 dihydroxy-acid dehydratase 0.62 ABIE53_003701 histidinol dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS21095 dihydroxy-acid dehydratase 0.62 QEN71_RS27865 histidinol dehydrogenase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.80 H281DRAFT_05312 dihydroxyacid dehydratase 0.62 H281DRAFT_05652 histidinol dehydrogenase — —
Marinobacter adhaerens HP15 0.78 HP15_595 dihydroxy-acid dehydratase 0.70 HP15_2428 histidinol dehydrogenase 0.57 56
Alteromonas macleodii MIT1002 0.78 MIT1002_04041 Dihydroxy-acid dehydratase 0.32 MIT1002_02633 Histidinol dehydrogenase 0.97 25
Sinorhizobium meliloti 1021 0.77 SMc04045 dihydroxy-acid dehydratase 0.47 SMc02307 histidinol dehydrogenase 0.88 55
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_00140 dihydroxy-acid dehydratase 0.34 CSW01_05750 histidinol dehydrogenase low > 62
Agrobacterium fabrum C58 0.76 Atu1918 dihydroxy-acid dehydratase 0.44 Atu0537 histidinol dehydrogenase — —
Rhizobium sp. OAE497 0.76 ABIE40_RS08005 dihydroxy-acid dehydratase 0.45 ABIE40_RS02725 histidinol dehydrogenase 0.91 11
Dechlorosoma suillum PS 0.75 Dsui_1122 dihydroxy-acid dehydratase 0.63 Dsui_1411 histidinol dehydrogenase — —
Shewanella sp. ANA-3 0.74 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.33 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.97 7
Escherichia coli Nissle 1917 0.74 ECOLIN_RS21665 dihydroxy-acid dehydratase 0.32 ECOLIN_RS11945 histidinol dehydrogenase — —
Escherichia fergusonii Becca 0.74 EFB2_04865 Dihydroxy-acid dehydratase 0.32 EFB2_01836 Histidinol dehydrogenase low > 86
Escherichia coli BW25113 0.74 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.32 b2020 hisD histidinol dehydrogenase (NCBI) 0.97 9
Shewanella oneidensis MR-1 0.74 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.32 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.99 5
Escherichia coli ECRC102 0.74 NIAGMN_12395 ilvD dihydroxy-acid dehydratase 0.32 NIAGMN_22460 hisD Histidinol dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.74 TX73_007515 dihydroxy-acid dehydratase 0.43 TX73_023540 histidinol dehydrogenase — —
Escherichia coli ECRC99 0.74 KEDOAH_13510 ilvD dihydroxy-acid dehydratase 0.32 KEDOAH_03635 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC101 0.74 MCAODC_05145 ilvD dihydroxy-acid dehydratase 0.32 MCAODC_20425 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC101 0.74 OKFHMN_14640 ilvD dihydroxy-acid dehydratase 0.32 OKFHMN_24515 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC98 0.74 JDDGAC_18260 ilvD dihydroxy-acid dehydratase 0.32 JDDGAC_28625 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC62 0.74 BNILDI_04750 ilvD dihydroxy-acid dehydratase 0.31 BNILDI_14740 hisD Histidinol dehydrogenase — —
Shewanella amazonensis SB2B 0.74 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.33 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.97 17
Escherichia coli ECOR27 0.74 NOLOHH_06775 ilvD dihydroxy-acid dehydratase 0.32 NOLOHH_15830 hisD Histidinol dehydrogenase 0.63 25
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04282 Dihydroxy-acid dehydratase 0.32 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Escherichia coli BL21 0.74 ECD_03649 dihydroxyacid dehydratase 0.32 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase low > 60
Escherichia coli ECOR38 0.74 HEPCGN_13350 ilvD dihydroxy-acid dehydratase 0.32 HEPCGN_03220 hisD Histidinol dehydrogenase low > 85
Synechococcus elongatus PCC 7942 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase 0.42 Synpcc7942_1519 hisD histidinol dehydrogenase — —
Shewanella loihica PV-4 0.74 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.33 Shew_2198 histidinol dehydrogenase (RefSeq) 0.93 42
Klebsiella michiganensis M5al 0.74 BWI76_RS00975 dihydroxy-acid dehydratase 0.31 BWI76_RS18925 histidinol dehydrogenase 0.91 23
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.32 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Azospirillum sp. SherDot2 0.73 MPMX19_05356 Dihydroxy-acid dehydratase 0.44 MPMX19_05543 Histidinol dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.73 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.46 PGA1_c31190 histidinol dehydrogenase HisD — —
Enterobacter sp. TBS_079 0.73 MPMX20_04499 Dihydroxy-acid dehydratase 0.31 MPMX20_03002 Histidinol dehydrogenase 0.96 5
Pectobacterium carotovorum WPP14 0.73 HER17_RS01075 dihydroxy-acid dehydratase 0.31 HER17_RS12230 histidinol dehydrogenase 0.98 4
Pantoea sp. MT58 0.73 IAI47_01035 dihydroxy-acid dehydratase 0.30 IAI47_07090 histidinol dehydrogenase 0.98 12
Dickeya dadantii 3937 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase 0.33 DDA3937_RS09735 histidinol dehydrogenase 0.93 3
Dickeya dianthicola 67-19 0.73 HGI48_RS20295 dihydroxy-acid dehydratase 0.32 HGI48_RS09745 histidinol dehydrogenase low > 71
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.31 EX28DRAFT_0539 histidinol dehydrogenase 0.90 13
Dickeya dianthicola ME23 0.72 DZA65_RS21335 dihydroxy-acid dehydratase 0.32 DZA65_RS10055 histidinol dehydrogenase 0.78 35
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS02650 dihydroxy-acid dehydratase 0.63 HSERO_RS20345 histidinol dehydrogenase 0.87 25
Caulobacter crescentus NA1000 Δfur 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.38 CCNA_02431 histidinol dehydrogenase low > 67
Caulobacter crescentus NA1000 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.38 CCNA_02431 histidinol dehydrogenase 0.98 2
Erwinia tracheiphila SCR3 0.72 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.31 LU632_RS08945 hisD histidinol dehydrogenase low > 74
Serratia liquefaciens MT49 0.72 IAI46_24345 dihydroxy-acid dehydratase 0.30 IAI46_08210 histidinol dehydrogenase low > 86
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS10100 dihydroxy-acid dehydratase 0.63 BPHYT_RS17710 histidinol dehydrogenase — —
Rhodospirillum rubrum S1H 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.47 Rru_A2771 Histidinol dehydrogenase (NCBI) 0.49 57
Magnetospirillum magneticum AMB-1 0.70 AMB_RS12770 dihydroxy-acid dehydratase 0.46 AMB_RS16905 histidinol dehydrogenase — —
Castellaniella sp019104865 MT123 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase 0.56 ABCV34_RS11230 histidinol dehydrogenase low > 48
Rahnella sp. WP5 0.69 EX31_RS15005 dihydroxy-acid dehydratase 0.32 EX31_RS11440 histidinol dehydrogenase 0.96 32
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.62 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) — —
Parabacteroides merdae CL09T00C40 0.63 HMPREF1078_RS16695 dihydroxy-acid dehydratase 0.31 HMPREF1078_RS02450 histidinol dehydrogenase low > 61
Phocaeicola vulgatus CL09T03C04 0.62 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.29 HMPREF1058_RS15875 histidinol dehydrogenase 0.89 7
Phocaeicola dorei CL03T12C01 0.62 ABI39_RS12715 dihydroxy-acid dehydratase 0.29 ABI39_RS11835 histidinol dehydrogenase 0.82 27
Bacteroides stercoris CC31F 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.29 HMPREF1181_RS04860 histidinol dehydrogenase 0.86 39
Bacteroides thetaiotaomicron VPI-5482 0.61 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.28 BT0201 histidinol dehydrogenase (NCBI ptt file) 0.92 17
Bacteroides ovatus ATCC 8483 0.60 BACOVA_03302 dihydroxy-acid dehydratase 0.28 BACOVA_01234 histidinol dehydrogenase 0.95 18
Bifidobacterium breve UCC2003 0.56 BBR_RS17635 dihydroxy-acid dehydratase 0.31 BBR_RS17055 histidinol dehydrogenase 0.31 15
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.39 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.84 23
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.41 DVU0796 hisD histidinol dehydrogenase (TIGR) 0.79 44
Methanococcus maripaludis JJ 0.33 MMJJ_RS03675 dihydroxy-acid dehydratase 0.35 MMJJ_RS00120 histidinol dehydrogenase — —
Methanococcus maripaludis S2 0.33 MMP_RS01700 dihydroxy-acid dehydratase 0.35 MMP_RS05015 histidinol dehydrogenase — —
Mycobacterium tuberculosis H37Rv 0.32 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) 0.28 Rv1599 Probable histidinol dehydrogenase HisD (HDH) — —
Variovorax sp. OAS795 0.31 ABID97_RS17500 dihydroxy-acid dehydratase 0.64 ABID97_RS23160 histidinol dehydrogenase — —
Variovorax sp. SCN45 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.64 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS16210 dihydroxy-acid dehydratase 0.66 RR42_RS18915 histidinol dehydrogenase — —
Ralstonia solanacearum GMI1000 0.30 RS_RS12105 dihydroxy-acid dehydratase 0.62 RS_RS14790 histidinol dehydrogenase — —
Bosea sp. OAE506 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase 0.45 ABIE41_RS24015 histidinol dehydrogenase — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase 0.63 RPSI07_RS10390 histidinol dehydrogenase — —
Ralstonia solanacearum UW163 0.29 UW163_RS09135 dihydroxy-acid dehydratase 0.62 UW163_RS06770 histidinol dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase 0.62 RALBFv3_RS06845 histidinol dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) 0.45 Dshi_0979 Histidinol dehydrogenase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.44 Ga0059261_1281 histidinol dehydrogenase 0.97 28
Acinetobacter radioresistens SK82 0.28 MPMX26_03019 Dihydroxy-acid dehydratase 0.57 MPMX26_02587 Histidinol dehydrogenase 0.83 27
Echinicola vietnamensis KMM 6221, DSM 17526 0.28 Echvi_2055 dihydroxy-acid dehydratase 0.30 Echvi_2459 histidinol dehydrogenase 0.90 34
Lysobacter sp. OAE881 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.32 ABIE51_RS13325 histidinol dehydrogenase 0.97 22
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.31 ABZR86_RS06730 histidinol dehydrogenase 0.95 5
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_06935 dihydroxy-acid dehydratase 0.29 CA264_05030 histidinol dehydrogenase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.33 CA265_RS03635 histidinol dehydrogenase 0.92 34
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase 0.32 ABZR88_RS06880 histidinol dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.32 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.28 A4249_RS10695 histidinol dehydrogenase 1.00 7
Rhodanobacter denitrificans MT42 0.25 LRK55_RS09960 dihydroxy-acid dehydratase 0.31 LRK55_RS01385 histidinol dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS10320 dihydroxy-acid dehydratase 0.31 LRK54_RS01605 histidinol dehydrogenase 0.69 36

Not shown: 1 genomes with orthologs for PP_5128 only; 1 genomes with orthologs for PP_0966 only