Conservation of cofitness between PP_4724 and PP_0966 in Pseudomonas putida KT2440

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4724 Carbamoyl-phosphate synthase small chain 1.0 PP_0966 Histidinol dehydrogenase 0.53 17
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_05635 carbamoyl phosphate synthase small subunit 0.92 AO353_05110 histidinol dehydrogenase
Pseudomonas simiae WCS417 0.93 PS417_24045 carbamoyl phosphate synthase small subunit 0.91 PS417_04420 histidinol dehydrogenase
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.92 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23)
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.90 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23)
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07485 carbamoyl phosphate synthase small subunit 0.90 AO356_06965 histidinol dehydrogenase
Pseudomonas sp. RS175 0.92 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.90 PFR28_00187 Histidinol dehydrogenase
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.91 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23)
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.92 PFLU_RS04470 histidinol dehydrogenase
Pseudomonas fluorescens SBW25 0.92 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.92 PFLU_RS04470 histidinol dehydrogenase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.89 Psyr_4133 histidinol dehydrogenase
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.89 Psyr_4133 histidinol dehydrogenase
Pseudomonas sp. S08-1 0.88 OH686_17075 Carbamoyl-phosphate synthase small chain 0.85 OH686_08470 Histidinol dehydrogenase
Pseudomonas stutzeri RCH2 0.87 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.85 Psest_3298 histidinol dehydrogenase
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.34 CSW01_05750 histidinol dehydrogenase low > 62
Marinobacter adhaerens HP15 0.75 HP15_3078 carbamoyl-phosphate synthase small chain 0.70 HP15_2428 histidinol dehydrogenase 0.42 8
Shewanella amazonensis SB2B 0.74 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.33 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.74 52
Rahnella sp. WP5 0.72 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 EX31_RS11440 histidinol dehydrogenase 0.95 27
Shewanella oneidensis MR-1 0.72 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.32 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.90 23
Pectobacterium carotovorum WPP14 0.72 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 HER17_RS12230 histidinol dehydrogenase 0.96 11
Klebsiella michiganensis M5al 0.72 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.31 BWI76_RS18925 histidinol dehydrogenase 0.49 64
Enterobacter asburiae PDN3 0.72 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.31 EX28DRAFT_0539 histidinol dehydrogenase
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.28 B158DRAFT_2293 histidinol dehydrogenase
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.32 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.32 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Escherichia coli BL21 0.71 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.32 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase low > 60
Escherichia coli BW25113 0.71 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.32 b2020 hisD histidinol dehydrogenase (NCBI) 0.85 34
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 ECOLIN_RS11945 histidinol dehydrogenase
Escherichia fergusonii Becca 0.71 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.32 EFB2_01836 Histidinol dehydrogenase low > 86
Enterobacter sp. TBS_079 0.71 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.31 MPMX20_03002 Histidinol dehydrogenase 0.84 40
Dickeya dianthicola ME23 0.71 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 DZA65_RS10055 histidinol dehydrogenase low > 75
Escherichia coli ECRC98 0.71 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.32 JDDGAC_28625 hisD Histidinol dehydrogenase
Dickeya dadantii 3937 0.71 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.33 DDA3937_RS09735 histidinol dehydrogenase 0.84 18
Escherichia coli ECRC62 0.71 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.31 BNILDI_14740 hisD Histidinol dehydrogenase
Alteromonas macleodii MIT1002 0.71 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.32 MIT1002_02633 Histidinol dehydrogenase 0.98 18
Escherichia coli ECOR27 0.71 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.32 NOLOHH_15830 hisD Histidinol dehydrogenase low > 57
Escherichia coli ECRC102 0.71 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.32 NIAGMN_22460 hisD Histidinol dehydrogenase
Escherichia coli ECRC99 0.71 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.32 KEDOAH_03635 hisD Histidinol dehydrogenase
Escherichia coli ECRC101 0.71 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.32 OKFHMN_24515 hisD Histidinol dehydrogenase
Escherichia coli ECRC101 0.71 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.32 MCAODC_20425 hisD Histidinol dehydrogenase
Dickeya dianthicola 67-19 0.71 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 HGI48_RS09745 histidinol dehydrogenase low > 71
Shewanella loihica PV-4 0.71 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.33 Shew_2198 histidinol dehydrogenase (RefSeq) 0.83 60
Escherichia coli ECOR38 0.71 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.32 HEPCGN_03220 hisD Histidinol dehydrogenase low > 85
Lysobacter sp. OAE881 0.70 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 ABIE51_RS13325 histidinol dehydrogenase 0.55 30
Shewanella sp. ANA-3 0.70 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.33 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.92 30
Serratia liquefaciens MT49 0.70 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.30 IAI46_08210 histidinol dehydrogenase low > 86
Acinetobacter radioresistens SK82 0.70 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.57 MPMX26_02587 Histidinol dehydrogenase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.35 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23)
Dechlorosoma suillum PS 0.69 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.63 Dsui_1411 histidinol dehydrogenase
Pantoea sp. MT58 0.69 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.30 IAI47_07090 histidinol dehydrogenase 0.89 15
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.66 RR42_RS18915 histidinol dehydrogenase
Ralstonia solanacearum PSI07 0.69 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.63 RPSI07_RS10390 histidinol dehydrogenase
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.62 RALBFv3_RS06845 histidinol dehydrogenase
Ralstonia solanacearum UW163 0.68 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.62 UW163_RS06770 histidinol dehydrogenase
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.62 ABZR87_RS02500 histidinol dehydrogenase
Erwinia tracheiphila SCR3 0.68 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 LU632_RS08945 hisD histidinol dehydrogenase 0.60 57
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.62 QEN71_RS27865 histidinol dehydrogenase
Ralstonia solanacearum GMI1000 0.68 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.62 RS_RS14790 histidinol dehydrogenase
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.63 HSERO_RS20345 histidinol dehydrogenase
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 LRK54_RS01605 histidinol dehydrogenase
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.63 BPHYT_RS17710 histidinol dehydrogenase
Rhodanobacter denitrificans MT42 0.66 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 LRK55_RS01385 histidinol dehydrogenase
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 ABZR86_RS06730 histidinol dehydrogenase
Variovorax sp. OAS795 0.66 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.64 ABID97_RS23160 histidinol dehydrogenase
Acidovorax sp. GW101-3H11 0.66 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.63 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23)
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.32 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Paraburkholderia graminis OAS925 0.66 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.62 ABIE53_003701 histidinol dehydrogenase
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.62 H281DRAFT_05652 histidinol dehydrogenase
Variovorax sp. SCN45 0.66 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.64 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.62 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23)
Castellaniella sp019104865 MT123 0.62 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.56 ABCV34_RS11230 histidinol dehydrogenase
Phaeobacter inhibens DSM 17395 0.52 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.46 PGA1_c31190 histidinol dehydrogenase HisD
Azospirillum sp. SherDot2 0.52 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.44 MPMX19_05543 Histidinol dehydrogenase
Rhodospirillum rubrum S1H 0.50 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.47 Rru_A2771 Histidinol dehydrogenase (NCBI) 0.59 51
Magnetospirillum magneticum AMB-1 0.50 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.46 AMB_RS16905 histidinol dehydrogenase
Rhodopseudomonas palustris CGA009 0.50 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.43 TX73_023540 histidinol dehydrogenase
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 A4249_RS10695 histidinol dehydrogenase
Dinoroseobacter shibae DFL-12 0.49 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.45 Dshi_0979 Histidinol dehydrogenase (RefSeq)
Sinorhizobium meliloti 1021 0.48 SMc01569 carbamoyl phosphate synthase small subunit 0.47 SMc02307 histidinol dehydrogenase 0.63 51
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 ABIE41_RS24015 histidinol dehydrogenase
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.44 Ga0059261_1281 histidinol dehydrogenase
Rhizobium sp. OAE497 0.47 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 ABIE40_RS02725 histidinol dehydrogenase
Agrobacterium fabrum C58 0.47 Atu2170 carbamoylphosphate synthase small chain 0.44 Atu0537 histidinol dehydrogenase
Caulobacter crescentus NA1000 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.38 CCNA_02431 histidinol dehydrogenase
Caulobacter crescentus NA1000 Δfur 0.47 CCNA_02925 carbamoyl-phosphate synthase small chain 0.38 CCNA_02431 histidinol dehydrogenase low > 67
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.42 Synpcc7942_1519 hisD histidinol dehydrogenase
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.31 BBR_RS17055 histidinol dehydrogenase low > 34
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.33 CA265_RS03635 histidinol dehydrogenase
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.39 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.64 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.30 Echvi_2459 histidinol dehydrogenase
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_19490 carbamoyl phosphate synthase small subunit 0.29 CA264_05030 histidinol dehydrogenase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.41 DVU0796 hisD histidinol dehydrogenase (TIGR)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.32 ABZR88_RS06880 histidinol dehydrogenase
Mycobacterium tuberculosis H37Rv 0.38 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.28 Rv1599 Probable histidinol dehydrogenase HisD (HDH)
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.35 MMJJ_RS00120 histidinol dehydrogenase
Methanococcus maripaludis S2 0.36 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.35 MMP_RS05015 histidinol dehydrogenase
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.28 BT0201 histidinol dehydrogenase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.33 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.28 BACOVA_01234 histidinol dehydrogenase low > 94
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 HMPREF1058_RS15875 histidinol dehydrogenase low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 HMPREF1078_RS02450 histidinol dehydrogenase low > 61
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 ABI39_RS11835 histidinol dehydrogenase low > 72
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.29 HMPREF1181_RS04860 histidinol dehydrogenase low > 56

Not shown: 2 genomes with orthologs for PP_4724 only; 0 genomes with orthologs for PP_0966 only