Conservation of cofitness between PGA1_c26160 and PGA1_c05870 in Phaeobacter inhibens DSM 17395

105 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c26160 uvrABC system protein B 1.0 PGA1_c05870 holliday junction ATP-dependent DNA helicase RuvB 0.45 17
Dinoroseobacter shibae DFL-12 0.86 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.81 Dshi_1105 Holliday junction DNA helicase RuvB (RefSeq)
Sphingomonas koreensis DSMZ 15582 0.68 Ga0059261_3779 Excinuclease ABC subunit B 0.64 Ga0059261_0819 Holliday junction DNA helicase subunit RuvB
Caulobacter crescentus NA1000 0.68 CCNA_03076 excinuclease ABC subunit B 0.66 CCNA_03344 Holliday junction DNA helicase RuvB 0.41 21
Caulobacter crescentus NA1000 Δfur 0.68 CCNA_03076 excinuclease ABC subunit B 0.66 CCNA_03344 Holliday junction DNA helicase RuvB
Brevundimonas sp. GW460-12-10-14-LB2 0.68 A4249_RS00555 excinuclease ABC subunit UvrB 0.64 A4249_RS15865 Holliday junction branch migration DNA helicase RuvB low > 48
Azospirillum brasilense Sp245 0.65 AZOBR_RS16420 excinuclease ABC subunit B 0.63 AZOBR_RS09050 Holliday junction DNA helicase RuvB
Azospirillum sp. SherDot2 0.64 MPMX19_01038 UvrABC system protein B 0.64 MPMX19_00698 Holliday junction ATP-dependent DNA helicase RuvB
Magnetospirillum magneticum AMB-1 0.64 AMB_RS19255 excinuclease ABC subunit UvrB 0.68 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB
Rhodospirillum rubrum S1H 0.63 Rru_A1133 Excinuclease ABC, B subunit (NCBI) 0.67 Rru_A1089 Holliday junction DNA helicase RuvB (NCBI)
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1974 Excinuclease ABC subunit B 0.58 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1974 Excinuclease ABC subunit B 0.58 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas sp. S08-1 0.53 OH686_04580 excinuclease ABC subunit B 0.57 OH686_19135 Holliday junction DNA helicase RuvB low > 80
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_21335 excinuclease ABC subunit B 0.58 AO356_18025 ATP-dependent DNA helicase RuvB low > 104
Pseudomonas aeruginosa PA14 0.53 IKLFDK_15985 excinuclease ABC subunit UvrB 0.57 IKLFDK_04375 Holliday junction branch migration DNA helicase RuvB low > 101
Pseudomonas sp. DMC3 0.53 GFF774 UvrABC system protein B 0.58 GFF5184 Holliday junction ATP-dependent DNA helicase RuvB low > 89
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_52 Excinuclease ABC subunit B 0.58 Pf6N2E2_5537 Holliday junction DNA helicase RuvB
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_2341 Excinuclease ABC subunit B 0.58 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB low > 40
Pectobacterium carotovorum WPP14 0.53 HER17_RS13420 excinuclease ABC subunit B 0.58 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB 0.48 72
Pseudomonas sp. SVBP6 0.53 COO64_RS05730 uvrB excinuclease ABC subunit UvrB 0.58 COO64_RS20100 ruvB Holliday junction branch migration DNA helicase RuvB low > 93
Pseudomonas putida KT2440 0.53 PP_1974 excinuclease UvrABC protein B 0.57 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB
Pseudomonas sp. RS175 0.53 PFR28_02837 UvrABC system protein B 0.58 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB low > 88
Serratia liquefaciens MT49 0.53 IAI46_06550 excinuclease ABC subunit B 0.58 IAI46_14620 Holliday junction branch migration DNA helicase RuvB
Pseudomonas fluorescens SBW25 0.53 PFLU_RS20655 excinuclease ABC subunit B 0.58 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS20655 excinuclease ABC subunit B 0.58 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas simiae WCS417 0.53 PS417_18685 excinuclease ABC subunit B 0.58 PS417_22445 ATP-dependent DNA helicase RuvB 0.21 61
Rahnella sp. WP5 0.53 EX31_RS23720 excinuclease ABC subunit B 0.58 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB
Pseudomonas stutzeri RCH2 0.53 Psest_1296 excinuclease ABC, B subunit 0.58 Psest_1497 Holliday junction DNA helicase, RuvB subunit
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20545 excinuclease ABC subunit B 0.58 AO353_03580 ATP-dependent DNA helicase RuvB low > 101
Pseudomonas sp. BP01 0.52 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB 0.57 JOY50_RS01815 ruvB Holliday junction branch migration DNA helicase RuvB low > 84
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_05185 excinuclease ABC subunit UvrB 0.58 CSW01_09240 Holliday junction branch migration DNA helicase RuvB 0.38 43
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_3959 Excinuclease ABC subunit B 0.58 PfGW456L13_1853 Holliday junction DNA helicase RuvB low > 87
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_26 Excinuclease ABC subunit B 0.58 Pf1N1B4_637 Holliday junction DNA helicase RuvB
Shewanella oneidensis MR-1 0.52 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.58 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) 0.31 61
Dickeya dadantii 3937 0.52 DDA3937_RS08530 excinuclease ABC subunit B 0.58 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB
Shewanella sp. ANA-3 0.52 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.58 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq)
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF675 Excinuclease ABC subunit B 0.60 GFF1639 Holliday junction DNA helicase RuvB
Dechlorosoma suillum PS 0.52 Dsui_2434 excinuclease ABC, B subunit 0.59 Dsui_0484 Holliday junction DNA helicase, RuvB subunit
Escherichia coli ECOR38 0.52 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB 0.61 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB low > 87
Escherichia coli ECRC62 0.52 BNILDI_21020 uvrB excinuclease ABC subunit UvrB 0.61 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_02934 UvrABC system protein B 0.61 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia coli BL21 0.52 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component 0.61 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome
Escherichia coli ECRC101 0.52 MCAODC_25595 uvrB excinuclease ABC subunit UvrB 0.61 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC98 0.52 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB 0.61 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR27 0.52 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB 0.61 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC99 0.52 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB 0.61 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC102 0.52 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB 0.61 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli BW25113 0.52 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.61 b1860 ruvB Holliday junction DNA helicase B (NCBI) low > 76
Escherichia coli ECRC100 0.52 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB 0.61 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia fergusonii Becca 0.52 EFB2_03326 UvrABC system protein B 0.61 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB
Klebsiella michiganensis M5al 0.52 BWI76_RS08785 excinuclease ABC subunit B 0.59 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB
Escherichia coli Nissle 1917 0.52 ECOLIN_RS04150 excinuclease ABC subunit UvrB 0.61 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB
Erwinia tracheiphila SCR3 0.52 LU632_RS09160 uvrB excinuclease ABC subunit B 0.57 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola ME23 0.52 DZA65_RS08990 excinuclease ABC subunit B 0.58 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola 67-19 0.52 HGI48_RS08695 excinuclease ABC subunit B 0.58 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.59 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB low > 80
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS14225 excinuclease ABC subunit UvrB 0.58 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum UW163 0.51 UW163_RS11690 excinuclease ABC subunit UvrB 0.58 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum PSI07 0.51 RPSI07_RS19240 excinuclease ABC subunit UvrB 0.58 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.2034.1 Excinuclease ABC subunit B 0.58 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB
Enterobacter asburiae PDN3 0.51 EX28DRAFT_2211 Excinuclease ABC subunit B 0.59 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB
Ralstonia solanacearum GMI1000 0.51 RS_RS05005 UvrABC system protein B 0.58 RS_RS02485 Holliday junction branch migration DNA helicase RuvB
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF4962 Excinuclease ABC subunit B 0.59 GFF1665 Holliday junction DNA helicase RuvB
Shewanella amazonensis SB2B 0.51 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.59 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) low > 62
Erwinia amylovora T8 0.51 OLJFJH_16735 excinuclease ABC subunit UvrB 0.57 OLJFJH_12860 Holliday junction branch migration DNA helicase RuvB
Alteromonas macleodii MIT1002 0.51 MIT1002_01261 Excinuclease ABC subunit B 0.57 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB
Acinetobacter radioresistens SK82 0.51 MPMX26_02142 UvrABC system protein B 0.57 MPMX26_02186 Holliday junction ATP-dependent DNA helicase RuvB low > 36
Pantoea sp. MT58 0.51 IAI47_13505 excinuclease ABC subunit B 0.58 IAI47_08450 Holliday junction branch migration DNA helicase RuvB low > 76
Marinobacter adhaerens HP15 0.51 HP15_1372 excinuclease ABC subunit B 0.57 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB
Castellaniella sp019104865 MT123 0.51 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.58 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB
Enterobacter sp. TBS_079 0.51 MPMX20_01408 UvrABC system protein B 0.59 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB low > 85
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04973 Excinuclease ABC subunit B 0.59 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS23870 excinuclease ABC subunit UvrB 0.59 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB
Acidovorax sp. GW101-3H11 0.51 Ac3H11_4114 Excinuclease ABC subunit B 0.59 Ac3H11_4685 Holliday junction DNA helicase RuvB
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS05995 excinuclease ABC subunit B 0.60 RR42_RS02700 ATP-dependent DNA helicase RuvB
Shewanella loihica PV-4 0.51 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.59 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) low > 60
Variovorax sp. OAS795 0.51 ABID97_RS13995 excinuclease ABC subunit UvrB 0.56 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB
Paraburkholderia graminis OAS925 0.51 ABIE53_001645 excinuclease ABC subunit B 0.59 ABIE53_003495 Holliday junction DNA helicase RuvB low > 113
Methylophilus sp. DMC18 0.51 GFF1123 UvrABC system protein B 0.59 GFF2327 Holliday junction ATP-dependent DNA helicase RuvB low > 43
Rhodanobacter sp000427505 FW510-R12 0.51 LRK53_RS14375 excinuclease ABC subunit UvrB 0.58 LRK53_RS05130 Holliday junction branch migration DNA helicase RuvB
Rhodanobacter denitrificans MT42 0.50 LRK55_RS13955 excinuclease ABC subunit UvrB 0.58 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS14235 excinuclease ABC subunit UvrB 0.58 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB 0.58 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06905 excinuclease ABC subunit B 0.59 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB
Lysobacter sp. OAE881 0.50 ABIE51_RS15310 excinuclease ABC subunit UvrB 0.58 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB
Variovorax sp. SCN45 0.50 GFF945 Excinuclease ABC subunit B 0.58 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.50 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) 0.57 DVU2255 ruvB Holliday junction DNA helicase RuvB (TIGR) low > 55
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.58 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB 0.52 63
Desulfovibrio vulgaris Miyazaki F 0.50 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.57 DvMF_3205 ruvB Holliday junction DNA helicase RuvB (RefSeq) 0.34 14
Pedobacter sp. GW460-11-11-14-LB5 0.50 CA265_RS19430 excinuclease ABC subunit B 0.50 CA265_RS07710 Holliday junction branch migration DNA helicase RuvB 0.33 32
Synechococcus elongatus PCC 7942 0.48 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.53 Synpcc7942_0835 ruvB Holliday junction DNA helicase B
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.53 ABZR88_RS07990 Holliday junction branch migration DNA helicase RuvB low > 71
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS15840 excinuclease ABC subunit B 0.61 HSERO_RS02095 Holliday junction DNA helicase RuvB low > 78
Fusobacterium nucleatum SB010 0.48 HUW76_02625 excinuclease ABC subunit UvrB 0.54 HUW76_04170 Holliday junction branch migration DNA helicase RuvB low > 35
Mycobacterium tuberculosis H37Rv 0.47 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB 0.50 Rv2592c Probable holliday junction DNA helicase RuvB
Pontibacter actiniarum KMM 6156, DSM 19842 0.47 CA264_19110 excinuclease ABC subunit B 0.53 CA264_19800 Holliday junction branch migration DNA helicase RuvB
Synechocystis sp000284455 PCC 6803 0.47 SGL_RS14040 excinuclease ABC subunit UvrB 0.45 SGL_RS14255 Holliday junction branch migration DNA helicase RuvB
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_1215 excinuclease ABC, B subunit 0.52 Echvi_0825 Holliday junction DNA helicase, RuvB subunit low > 79
Cellulophaga baltica 18 0.47 M666_RS19015 excinuclease ABC subunit UvrB 0.53 M666_RS07660 Holliday junction branch migration DNA helicase RuvB low > 67
Bifidobacterium breve UCC2003 0.46 BBR_RS14285 excinuclease ABC subunit UvrB 0.44 BBR_RS15660 Holliday junction branch migration DNA helicase RuvB 0.70 7
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS15855 excinuclease ABC subunit UvrB 0.52 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS15225 excinuclease ABC subunit UvrB 0.51 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS01765 excinuclease ABC subunit UvrB 0.51 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB low > 67
Bacteroides thetaiotaomicron VPI-5482 0.43 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.51 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file)
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS15300 excinuclease ABC subunit UvrB 0.51 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB low > 72
Bacteroides ovatus ATCC 8483 0.42 BACOVA_03714 excinuclease ABC, B subunit 0.52 BACOVA_00895 Holliday junction DNA helicase RuvB

Not shown: 2 genomes with orthologs for PGA1_c26160 only; 6 genomes with orthologs for PGA1_c05870 only