Conservation of cofitness between GFF48 and GFF4191 in Sphingobium sp. HT1-2

115 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF48 GTP-binding and nucleic acid-binding protein YchF 1.0 GFF4191 DNA mismatch repair protein MutS — —
Sphingomonas koreensis DSMZ 15582 0.82 Ga0059261_3227 GTP-binding protein YchF 0.64 Ga0059261_3784 DNA mismatch repair protein MutS 0.51 3
Rhodospirillum rubrum S1H 0.74 Rru_A3748 hypothetical protein (NCBI) 0.44 Rru_A3541 MutS 1 protein (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.71 TX73_022570 redox-regulated ATPase YchF 0.45 TX73_002655 DNA mismatch repair protein MutS low > 86
Magnetospirillum magneticum AMB-1 0.70 AMB_RS21985 redox-regulated ATPase YchF 0.46 AMB_RS01455 DNA mismatch repair protein MutS — —
Azospirillum sp. SherDot2 0.69 MPMX19_01641 Ribosome-binding ATPase YchF 0.46 MPMX19_00908 DNA mismatch repair protein MutS — —
Azospirillum brasilense Sp245 0.69 AZOBR_RS30645 GTP-binding protein YchF 0.45 AZOBR_RS02125 DNA mismatch repair protein MutS — —
Xanthobacter sp. DMC5 0.68 GFF1678 Ribosome-binding ATPase YchF 0.44 GFF3848 DNA mismatch repair protein MutS — —
Agrobacterium fabrum C58 0.67 Atu2233 GTP-binding protein 0.44 Atu0345 DNA mismatch repair protein, MutS family — —
Bosea sp. OAE506 0.67 ABIE41_RS11295 redox-regulated ATPase YchF 0.43 ABIE41_RS03650 DNA mismatch repair protein MutS — —
Rhizobium sp. OAE497 0.67 ABIE40_RS13100 redox-regulated ATPase YchF 0.42 ABIE40_RS01775 DNA mismatch repair protein MutS — —
Sinorhizobium meliloti 1021 0.67 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.41 SMc01125 DNA mismatch repair protein MutS low > 103
Phaeobacter inhibens DSM 17395 0.65 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.45 PGA1_c35000 DNA mismatch repair protein MutS low > 62
Caulobacter crescentus NA1000 Δfur 0.65 CCNA_00512 GTP-binding protein, probable translation factor 0.42 CCNA_00012 DNA mismatch repair protein MutS low > 67
Caulobacter crescentus NA1000 0.65 CCNA_00512 GTP-binding protein, probable translation factor 0.42 CCNA_00012 DNA mismatch repair protein MutS low > 66
Dinoroseobacter shibae DFL-12 0.63 Dshi_0954 GTP-binding protein YchF (RefSeq) 0.44 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS09035 redox-regulated ATPase YchF 0.41 A4249_RS12110 DNA mismatch repair protein MutS low > 48
Acinetobacter baumannii LAC-4 0.57 RR41_RS11610 redox-regulated ATPase YchF 0.34 RR41_RS10460 DNA mismatch repair protein MutS — —
Acinetobacter radioresistens SK82 0.57 MPMX26_01861 Ribosome-binding ATPase YchF 0.33 MPMX26_01954 DNA mismatch repair protein MutS low > 36
Synechococcus elongatus PCC 7942 0.57 Synpcc7942_0554 ychF translation-associated GTPase 0.26 Synpcc7942_2247 mutS DNA mismatch repair protein low > 38
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_2052 GTP-binding protein YchF 0.32 B158DRAFT_1529 DNA mismatch repair protein MutS low > 40
Parabacteroides merdae CL09T00C40 0.56 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.28 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.56 ABZR88_RS14155 redox-regulated ATPase YchF 0.27 ABZR88_RS10580 DNA mismatch repair protein MutS low > 71
Synechocystis sp000284455 PCC 6803 0.56 SGL_RS08975 redox-regulated ATPase YchF 0.28 SGL_RS08315 DNA mismatch repair protein MutS low > 52
Marinobacter adhaerens HP15 0.56 HP15_704 translation-associated GTPase 0.32 HP15_1047 DNA mismatch repair protein MutS 0.29 27
Pontibacter actiniarum KMM 6156, DSM 19842 0.56 CA264_07495 GTP-binding protein YchF 0.27 CA264_18545 DNA mismatch repair protein MutS low > 74
Bacteroides thetaiotaomicron VPI-5482 0.56 BT3116 GTP-binding protein (NCBI ptt file) 0.29 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.56 BACOVA_02821 GTP-binding protein YchF 0.29 BACOVA_02824 DNA mismatch repair protein MutS low > 96
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS11490 redox-regulated ATPase YchF 0.29 HMPREF1058_RS11435 DNA mismatch repair protein MutS low > 67
Phocaeicola dorei CL03T12C01 0.55 ABI39_RS05450 redox-regulated ATPase YchF 0.29 ABI39_RS05500 DNA mismatch repair protein MutS low > 72
Pseudomonas aeruginosa PA14 0.55 IKLFDK_00125 Ribosome-binding ATPase YchF 0.33 IKLFDK_18480 DNA mismatch repair protein MutS low > 100
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS03610 redox-regulated ATPase YchF 0.33 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS03610 redox-regulated ATPase YchF 0.33 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas sp. RS175 0.55 PFR28_03664 Ribosome-binding ATPase YchF 0.33 PFR28_00429 DNA mismatch repair protein MutS low > 88
Shewanella amazonensis SB2B 0.55 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.32 Sama_1045 DNA mismatch repair protein MutS (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS22010 redox-regulated ATPase YchF 0.33 ABZR86_RS00630 DNA mismatch repair protein MutS low > 74
Alteromonas macleodii MIT1002 0.55 MIT1002_01504 Ribosome-binding ATPase YchF 0.33 MIT1002_00953 DNA mismatch repair protein MutS low > 70
Shewanella sp. ANA-3 0.55 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.32 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) low > 73
Pseudomonas putida KT2440 0.54 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.33 PP_1626 DNA mismatch repair protein MutS 0.32 33
Pseudomonas sp. DMC3 0.54 GFF4499 Ribosome-binding ATPase YchF 0.33 GFF2086 DNA mismatch repair protein MutS low > 89
Pseudomonas sp. BP01 0.54 JOY50_RS24895 ychF redox-regulated ATPase YchF 0.33 JOY50_RS23765 mutS DNA mismatch repair protein MutS low > 84
Pseudomonas stutzeri RCH2 0.54 Psest_1103 GTP-binding protein YchF 0.34 Psest_2875 DNA mismatch repair protein MutS low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1429 GTP-binding protein (TIGR) 0.29 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) low > 55
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_16450 GTP-binding protein 0.33 AO356_05875 DNA mismatch repair protein MutS low > 104
Dechlorosoma suillum PS 0.54 Dsui_1039 GTP-binding protein YchF 0.32 Dsui_2244 DNA mismatch repair protein MutS — —
Pseudomonas lactucae CFBP13502 0.54 GEMAOFIL_00918 Ribosome-binding ATPase YchF 0.33 GEMAOFIL_01323 DNA mismatch repair protein MutS low > 93
Shewanella oneidensis MR-1 0.54 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.31 SO3431 mutS DNA mismatch repair protein MutS (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_14740 GTP-binding protein 0.33 AO353_16625 DNA mismatch repair protein MutS 0.38 47
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.31 OHPLBJKB_01000 DNA mismatch repair protein MutS low > 74
Escherichia coli ECRC98 0.54 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.31 JDDGAC_24190 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli Nissle 1917 0.54 ECOLIN_RS07280 redox-regulated ATPase YchF 0.31 ECOLIN_RS15275 DNA mismatch repair protein MutS 0.31 14
Pseudomonas simiae WCS417 0.54 PS417_03560 GTP-binding protein 0.33 PS417_05680 DNA mismatch repair protein MutS low > 88
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0941 Conserved hypothetical protein 92 0.34 Psyr_1376 DNA mismatch repair protein MutS low > 86
Escherichia coli BW25113 0.54 b1203 ychF translation-associated GTPase (NCBI) 0.31 b2733 mutS DNA mismatch repair protein (NCBI) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0941 Conserved hypothetical protein 92 0.34 Psyr_1376 DNA mismatch repair protein MutS low > 86
Escherichia coli ECRC99 0.54 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.31 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC101 0.54 MCAODC_21850 ychF redox-regulated ATPase YchF 0.31 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 88
Escherichia coli ECOR27 0.54 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.31 NOLOHH_12370 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC102 0.54 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.31 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC100 0.54 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.31 OKFHMN_20525 mutS DNA mismatch repair protein MutS — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.32 PfGW456L13_4672 DNA mismatch repair protein MutS low > 87
Escherichia fergusonii Becca 0.54 EFB2_02724 Ribosome-binding ATPase YchF 0.31 EFB2_01179 DNA mismatch repair protein MutS low > 86
Escherichia coli ECOR38 0.54 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.31 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 88
Pseudomonas segetis P6 0.54 MPMX49_01326 Ribosome-binding ATPase YchF 0.33 MPMX49_03425 DNA mismatch repair protein MutS low > 75
Escherichia coli ECRC62 0.54 BNILDI_18805 ychF redox-regulated ATPase YchF 0.31 BNILDI_10920 mutS DNA mismatch repair protein MutS low > 75
Methylophilus sp. DMC18 0.54 GFF1904 Ribosome-binding ATPase YchF 0.33 GFF439 DNA mismatch repair protein MutS low > 43
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS17445 GTP-binding protein YchF 0.30 BPHYT_RS12475 DNA mismatch repair protein MutS low > 109
Pseudomonas sp. S08-1 0.54 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.33 OH686_18195 DNA mismatch repair protein MutS low > 80
Escherichia coli BL21 0.54 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.31 ECD_02583 methyl-directed mismatch repair protein — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.33 Pf1N1B4_3117 DNA mismatch repair protein MutS low > 87
Pseudomonas sp. SVBP6 0.54 COO64_RS03185 ychF redox-regulated ATPase YchF 0.33 COO64_RS19805 mutS DNA mismatch repair protein MutS low > 93
Pectobacterium carotovorum WPP14 0.54 HER17_RS10445 redox-regulated ATPase YchF 0.33 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS13275 redox-regulated ATPase YchF 0.27 CA265_RS08220 DNA mismatch repair protein MutS low > 88
Erwinia amylovora T8 0.54 OLJFJH_14950 redox-regulated ATPase YchF 0.33 OLJFJH_09385 DNA mismatch repair protein MutS low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.32 GFF4773 DNA mismatch repair protein MutS low > 78
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.31 Xcc-8004.3760.1 DNA mismatch repair protein MutS low > 74
Lysobacter sp. OAE881 0.54 ABIE51_RS05745 redox-regulated ATPase YchF 0.33 ABIE51_RS07785 DNA mismatch repair protein MutS low > 62
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_10875 redox-regulated ATPase YchF 0.33 CSW01_02840 DNA mismatch repair protein MutS low > 62
Dickeya dianthicola ME23 0.53 DZA65_RS11435 redox-regulated ATPase YchF 0.32 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Klebsiella michiganensis M5al 0.53 BWI76_RS17485 GTP-binding protein YchF 0.32 BWI76_RS22600 DNA mismatch repair protein MutS — —
Dickeya dianthicola 67-19 0.53 HGI48_RS10975 redox-regulated ATPase YchF 0.33 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Cellulophaga baltica 18 0.53 M666_RS17330 redox-regulated ATPase YchF 0.27 M666_RS07920 DNA mismatch repair protein MutS low > 67
Enterobacter sp. TBS_079 0.53 MPMX20_02645 Ribosome-binding ATPase YchF 0.32 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS18365 GTP-binding protein 0.31 RR42_RS06285 DNA mismatch repair protein MutS low > 128
Paraburkholderia graminis OAS925 0.53 ABIE53_003650 GTP-binding protein YchF 0.29 ABIE53_002719 DNA mismatch repair protein MutS low > 113
Klebsiella pneumoniae MKP103 0.53 KDGMDA_24705 redox-regulated ATPase YchF 0.33 KDGMDA_03170 DNA mismatch repair protein MutS low > 95
Dickeya dadantii 3937 0.53 DDA3937_RS11035 redox-regulated ATPase YchF 0.33 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Erwinia tracheiphila SCR3 0.53 LU632_RS13950 ychF redox-regulated ATPase YchF 0.32 LU632_RS06485 mutS DNA mismatch repair protein MutS low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.53 Echvi_2525 GTP-binding protein YchF 0.28 Echvi_0960 DNA mismatch repair protein MutS low > 79
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_05705 hypothetical protein 0.30 H281DRAFT_00537 DNA mismatch repair protein MutS low > 103
Shewanella loihica PV-4 0.53 Shew_2919 translation-associated GTPase (RefSeq) 0.32 Shew_1214 DNA mismatch repair protein (RefSeq) 0.46 58
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0821 GTP-binding protein YchF 0.32 EX28DRAFT_2829 DNA mismatch repair protein MutS — —
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_21765 ychF redox-regulated ATPase YchF 0.32 IJEDHG_17505 mutS DNA mismatch repair protein MutS — —
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0234 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.29 DvMF_0355 DNA mismatch repair protein MutS (RefSeq) low > 51
Serratia liquefaciens MT49 0.53 IAI46_10240 redox-regulated ATPase YchF 0.32 IAI46_03800 DNA mismatch repair protein MutS — —
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS17295 redox-regulated ATPase YchF 0.32 PagCFBP13505_RS16730 DNA mismatch repair protein MutS low > 74
Castellaniella sp019104865 MT123 0.53 ABCV34_RS09215 redox-regulated ATPase YchF 0.30 ABCV34_RS00270 DNA mismatch repair protein MutS low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.27 GFF3599 DNA mismatch repair protein MutS low > 90
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS02000 redox-regulated ATPase YchF 0.28 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS02220 redox-regulated ATPase YchF 0.31 ABZR87_RS10580 DNA mismatch repair protein MutS low > 80
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS27600 redox-regulated ATPase YchF 0.28 QEN71_RS06085 DNA mismatch repair protein MutS low > 153
Pantoea sp. MT58 0.52 IAI47_11310 redox-regulated ATPase YchF 0.32 IAI47_04240 DNA mismatch repair protein MutS low > 76
Ralstonia solanacearum PSI07 0.52 RPSI07_RS10660 redox-regulated ATPase YchF 0.30 RPSI07_RS18440 DNA mismatch repair protein MutS low > 81
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_10565 Ribosome-binding ATPase YchF 0.33 OKGIIK_03705 mutS DNA mismatch repair protein MutS low > 53
Ralstonia solanacearum GMI1000 0.52 RS_RS14520 redox-regulated ATPase YchF 0.31 RS_RS05735 DNA mismatch repair protein MutS low > 80
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS06260 redox-regulated ATPase YchF 0.32 LRK53_RS13685 DNA mismatch repair protein MutS — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS06570 redox-regulated ATPase YchF 0.30 RALBFv3_RS14920 DNA mismatch repair protein MutS low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS07055 redox-regulated ATPase YchF 0.30 UW163_RS12390 DNA mismatch repair protein MutS — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS03675 redox-regulated ATPase YchF 0.32 LRK54_RS14935 DNA mismatch repair protein MutS low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS03425 redox-regulated ATPase YchF 0.32 LRK55_RS14650 DNA mismatch repair protein MutS low > 63
Rahnella sp. WP5 0.51 EX31_RS07380 redox-regulated ATPase YchF 0.32 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Acidovorax sp. GW101-3H11 0.51 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.29 Ac3H11_3641 DNA mismatch repair protein MutS — —
Fusobacterium nucleatum SB010 0.51 HUW76_08540 redox-regulated ATPase YchF 0.29 HUW76_04335 DNA mismatch repair protein MutS low > 35
Variovorax sp. OAS795 0.51 ABID97_RS24750 redox-regulated ATPase YchF 0.26 ABID97_RS20815 DNA mismatch repair protein MutS low > 91
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS20405 GTP-binding protein YchF 0.31 HSERO_RS16360 DNA mismatch repair protein MutS low > 78
Variovorax sp. SCN45 0.50 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.26 GFF6634 DNA mismatch repair protein MutS low > 127

Not shown: 4 genomes with orthologs for GFF48 only; 1 genomes with orthologs for GFF4191 only