Conservation of cofitness between PGA1_c29490 and PGA1_c03060 in Phaeobacter inhibens DSM 17395

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c29490 dihydroxy-acid dehydratase LivD 1.0 PGA1_c03060 aspartate carbamoyltransferase PyrB 0.87 17
Sinorhizobium meliloti 1021 0.77 SMc04045 dihydroxy-acid dehydratase 0.63 SMc01360 aspartate carbamoyltransferase catalytic subunit 0.85 65
Rhizobium sp. OAE497 0.76 ABIE40_RS08005 dihydroxy-acid dehydratase 0.60 ABIE40_RS07385 aspartate carbamoyltransferase catalytic subunit — —
Agrobacterium fabrum C58 0.76 Atu1918 dihydroxy-acid dehydratase 0.60 Atu1308 aspartate carbamoyl transferase catalytic subunit — —
Rhodopseudomonas palustris CGA009 0.76 TX73_007515 dihydroxy-acid dehydratase 0.59 TX73_016120 aspartate carbamoyltransferase catalytic subunit — —
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.46 PfGW456L13_1016 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_08345 dihydroxy-acid dehydratase 0.46 AO353_08135 aspartate carbamoyltransferase catalytic subunit — —
Pseudomonas fluorescens SBW25 0.75 PFLU_RS28535 dihydroxy-acid dehydratase 0.46 PFLU_RS28345 aspartate carbamoyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS28535 dihydroxy-acid dehydratase 0.46 PFLU_RS28345 aspartate carbamoyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.46 Pf1N1B4_2347 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Pseudomonas sp. RS175 0.75 PFR28_04278 Dihydroxy-acid dehydratase 0.45 PFR28_04237 Aspartate carbamoyltransferase — —
Pseudomonas simiae WCS417 0.74 PS417_26890 dihydroxy-acid dehydratase 0.46 PS417_26700 aspartate carbamoyltransferase catalytic subunit — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.46 Pf6N2E2_4606 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Pseudomonas sp. S08-1 0.74 OH686_14100 dihydroxy-acid dehydratase 0.46 OH686_10940 aspartate carbamoyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_13250 dihydroxy-acid dehydratase 0.46 AO356_13450 aspartate carbamoyltransferase catalytic subunit — —
Pseudomonas putida KT2440 0.74 PP_5128 Dihydroxy-acid dehydratase 0.46 PP_4998 Aspartate carbamoyltransferase — —
Magnetospirillum magneticum AMB-1 0.74 AMB_RS12770 dihydroxy-acid dehydratase 0.65 AMB_RS18300 aspartate carbamoyltransferase — —
Synechococcus elongatus PCC 7942 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase 0.37 Synpcc7942_0670 pyrB aspartate carbamoyltransferase catalytic subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_0469 dihydroxyacid dehydratase 0.46 Psyr_0482 aspartate carbamoyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_0469 dihydroxyacid dehydratase 0.46 Psyr_0482 aspartate carbamoyltransferase — —
Pseudomonas stutzeri RCH2 0.74 Psest_0234 dihydroxy-acid dehydratase 0.47 Psest_0291 aspartate carbamoyltransferase — —
Paraburkholderia sabiae LMG 24235 0.73 QEN71_RS21095 dihydroxy-acid dehydratase 0.46 QEN71_RS25780 aspartate carbamoyltransferase catalytic subunit low > 153
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS00240 dihydroxy-acid dehydratase 0.45 ABZR87_RS08625 aspartate carbamoyltransferase catalytic subunit low > 80
Acidovorax sp. GW101-3H11 0.73 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.45 Ac3H11_3978 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS15015 dihydroxy-acid dehydratase 0.62 AZOBR_RS20575 aspartate carbamoyltransferase low > 97
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.35 Xcc-8004.1722.1 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_00140 dihydroxy-acid dehydratase 0.21 CSW01_12725 aspartate carbamoyltransferase low > 62
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_05312 dihydroxyacid dehydratase 0.45 H281DRAFT_04817 aspartate carbamoyltransferase low > 103
Azospirillum sp. SherDot2 0.72 MPMX19_05356 Dihydroxy-acid dehydratase 0.64 MPMX19_01054 Aspartate carbamoyltransferase — —
Paraburkholderia graminis OAS925 0.72 ABIE53_006513 dihydroxy-acid dehydratase 0.45 ABIE53_001131 aspartate carbamoyltransferase catalytic subunit low > 113
Dechlorosoma suillum PS 0.72 Dsui_1122 dihydroxy-acid dehydratase 0.46 Dsui_0596 aspartate carbamoyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.54 CCNA_02525 aspartate carbamoyltransferase low > 67
Caulobacter crescentus NA1000 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.54 CCNA_02525 aspartate carbamoyltransferase low > 66
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.20 GFF930 Aspartate carbamoyltransferase (EC 2.1.3.2) low > 78
Escherichia fergusonii Becca 0.71 EFB2_04865 Dihydroxy-acid dehydratase 0.21 EFB2_04288 Aspartate carbamoyltransferase catalytic subunit low > 86
Escherichia coli Nissle 1917 0.71 ECOLIN_RS21665 dihydroxy-acid dehydratase 0.21 ECOLIN_RS24625 aspartate carbamoyltransferase low > 52
Escherichia coli BW25113 0.71 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.21 b4245 pyrB aspartate carbamoyltransferase catalytic subunit (NCBI) low > 76
Alteromonas macleodii MIT1002 0.71 MIT1002_04041 Dihydroxy-acid dehydratase 0.20 MIT1002_00423 Aspartate carbamoyltransferase catalytic chain 0.90 54
Enterobacter sp. TBS_079 0.71 MPMX20_04499 Dihydroxy-acid dehydratase 0.20 MPMX20_00544 Aspartate carbamoyltransferase catalytic subunit 0.87 51
Escherichia coli ECOR27 0.71 NOLOHH_06775 ilvD dihydroxy-acid dehydratase 0.21 NOLOHH_04125 pyrB aspartate carbamoyltransferase low > 57
Escherichia coli ECOR38 0.71 HEPCGN_13350 ilvD dihydroxy-acid dehydratase 0.21 HEPCGN_10060 pyrB aspartate carbamoyltransferase low > 85
Escherichia coli ECRC62 0.71 BNILDI_04750 ilvD dihydroxy-acid dehydratase 0.21 BNILDI_07385 pyrB aspartate carbamoyltransferase — —
Escherichia coli BL21 0.71 ECD_03649 dihydroxyacid dehydratase 0.21 ECD_04113 aspartate carbamoyltransferase, catalytic subunit 0.40 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_04282 Dihydroxy-acid dehydratase 0.21 OHPLBJKB_03789 Aspartate carbamoyltransferase catalytic subunit low > 73
Enterobacter asburiae PDN3 0.71 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.20 EX28DRAFT_3446 aspartate carbamoyltransferase (EC 2.1.3.2) — —
Escherichia coli ECRC102 0.71 NIAGMN_12395 ilvD dihydroxy-acid dehydratase 0.21 NIAGMN_09715 pyrB aspartate carbamoyltransferase — —
Escherichia coli ECRC101 0.71 OKFHMN_14640 ilvD dihydroxy-acid dehydratase 0.21 OKFHMN_11865 pyrB aspartate carbamoyltransferase — —
Escherichia coli ECRC98 0.71 JDDGAC_18260 ilvD dihydroxy-acid dehydratase 0.21 JDDGAC_15505 pyrB aspartate carbamoyltransferase — —
Escherichia coli ECRC99 0.71 KEDOAH_13510 ilvD dihydroxy-acid dehydratase 0.21 KEDOAH_16290 pyrB aspartate carbamoyltransferase — —
Escherichia coli ECRC101 0.71 MCAODC_05145 ilvD dihydroxy-acid dehydratase 0.21 MCAODC_02370 pyrB aspartate carbamoyltransferase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS01075 dihydroxy-acid dehydratase 0.21 HER17_RS19510 aspartate carbamoyltransferase 0.97 24
Klebsiella michiganensis M5al 0.71 BWI76_RS00975 dihydroxy-acid dehydratase 0.20 BWI76_RS02995 aspartate carbamoyltransferase 0.51 90
Pantoea sp. MT58 0.71 IAI47_01035 dihydroxy-acid dehydratase 0.21 IAI47_16860 aspartate carbamoyltransferase 0.79 67
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS02650 dihydroxy-acid dehydratase 0.45 HSERO_RS02330 aspartate carbamoyltransferase 0.53 57
Dickeya dadantii 3937 0.70 DDA3937_RS20155 dihydroxy-acid dehydratase 0.19 DDA3937_RS01925 aspartate carbamoyltransferase low > 74
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS10100 dihydroxy-acid dehydratase 0.46 BPHYT_RS04235 aspartate carbamoyltransferase low > 109
Dickeya dianthicola 67-19 0.70 HGI48_RS20295 dihydroxy-acid dehydratase 0.20 HGI48_RS01900 aspartate carbamoyltransferase low > 71
Rhodospirillum rubrum S1H 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) 0.63 Rru_A3190 Aspartate carbamoyltransferase (NCBI) 0.50 53
Dickeya dianthicola ME23 0.69 DZA65_RS21335 dihydroxy-acid dehydratase 0.20 DZA65_RS01970 aspartate carbamoyltransferase 0.80 27
Serratia liquefaciens MT49 0.69 IAI46_24345 dihydroxy-acid dehydratase 0.20 IAI46_02275 aspartate carbamoyltransferase 0.64 40
Shewanella loihica PV-4 0.69 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.18 Shew_1013 aspartate carbamoyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.69 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.19 Shewana3_3070 aspartate carbamoyltransferase (RefSeq) 0.89 67
Shewanella amazonensis SB2B 0.69 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.18 Sama_0840 aspartate carbamoyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.68 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.19 SO1301 pyrB aspartate carbamoyltransferase (NCBI ptt file) low > 76
Erwinia tracheiphila SCR3 0.68 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.21 LU632_RS20950 pyrB aspartate carbamoyltransferase low > 74
Marinobacter adhaerens HP15 0.68 HP15_595 dihydroxy-acid dehydratase 0.46 HP15_3507 aspartate carbamoyltransferase 0.65 32
Rahnella sp. WP5 0.66 EX31_RS15005 dihydroxy-acid dehydratase 0.20 EX31_RS12785 aspartate carbamoyltransferase 0.93 56
Parabacteroides merdae CL09T00C40 0.62 HMPREF1078_RS16695 dihydroxy-acid dehydratase 0.19 HMPREF1078_RS01350 aspartate carbamoyltransferase — —
Phocaeicola dorei CL03T12C01 0.61 ABI39_RS12715 dihydroxy-acid dehydratase 0.19 ABI39_RS17400 aspartate carbamoyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.61 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.19 HMPREF1058_RS03820 aspartate carbamoyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.42 GFF651 Aspartate carbamoyltransferase (EC 2.1.3.2) low > 90
Bacteroides stercoris CC31F 0.61 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.19 HMPREF1181_RS14990 aspartate carbamoyltransferase 0.83 48
Bacteroides thetaiotaomicron VPI-5482 0.60 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) 0.18 BT0742 aspartate carbamoyltransferase catalytic chain (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.59 BACOVA_03302 dihydroxy-acid dehydratase 0.18 BACOVA_02450 aspartate carbamoyltransferase — —
Bifidobacterium breve UCC2003 0.55 BBR_RS17635 dihydroxy-acid dehydratase 0.22 BBR_RS15425 aspartate carbamoyltransferase low > 34
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.42 DVU2901 pyrB aspartate carbamoyltransferase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) 0.40 DvMF_1425 pyrB aspartate carbamoyltransferase catalytic subunit (RefSeq) 0.68 51
Methanococcus maripaludis JJ 0.34 MMJJ_RS03675 dihydroxy-acid dehydratase 0.21 MMJJ_RS05825 aspartate carbamoyltransferase — —
Methanococcus maripaludis S2 0.33 MMP_RS01700 dihydroxy-acid dehydratase 0.21 MMP_RS08545 aspartate carbamoyltransferase — —
Mycobacterium tuberculosis H37Rv 0.33 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) 0.41 Rv1380 Probable aspartate carbamoyltransferase PyrB (ATCase) (aspartate transcarbamylase) — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) 0.83 Dshi_3091 aspartate carbamoyltransferase (RefSeq) — —
Variovorax sp. OAS795 0.31 ABID97_RS17500 dihydroxy-acid dehydratase 0.45 ABID97_RS24660 aspartate carbamoyltransferase catalytic subunit — —
Variovorax sp. SCN45 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.45 GFF2160 Aspartate carbamoyltransferase (EC 2.1.3.2) — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS16210 dihydroxy-acid dehydratase 0.44 RR42_RS15860 aspartate carbamoyltransferase catalytic subunit — —
Ralstonia solanacearum GMI1000 0.30 RS_RS12105 dihydroxy-acid dehydratase 0.45 RS_RS03410 aspartate carbamoyltransferase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS04535 dihydroxy-acid dehydratase 0.45 RALBFv3_RS12625 aspartate carbamoyltransferase catalytic subunit — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase 0.45 RPSI07_RS20635 aspartate carbamoyltransferase catalytic subunit — —
Ralstonia solanacearum UW163 0.30 UW163_RS09135 dihydroxy-acid dehydratase 0.45 UW163_RS00940 aspartate carbamoyltransferase catalytic subunit — —
Acinetobacter radioresistens SK82 0.30 MPMX26_03019 Dihydroxy-acid dehydratase 0.42 MPMX26_01099 Aspartate carbamoyltransferase low > 36
Bosea sp. OAE506 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase 0.59 ABIE41_RS17230 aspartate carbamoyltransferase catalytic subunit — —
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.56 Ga0059261_0076 aspartate carbamoyltransferase (EC 2.1.3.2) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS11575 dihydroxy-acid dehydratase 0.41 ABZR88_RS03460 aspartate carbamoyltransferase catalytic subunit — —
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_13600 ilvD dihydroxy-acid dehydratase 0.36 OKGIIK_11095 pyrB aspartate carbamoyltransferase catalytic subunit — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_06935 dihydroxy-acid dehydratase 0.39 CA264_20465 aspartate carbamoyltransferase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2055 dihydroxy-acid dehydratase 0.40 Echvi_4661 aspartate carbamoyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.36 ABZR86_RS10390 aspartate carbamoyltransferase catalytic subunit — —
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS15795 dihydroxy-acid dehydratase 0.42 CA265_RS14660 aspartate carbamoyltransferase — —
Lysobacter sp. OAE881 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.36 ABIE51_RS16015 aspartate carbamoyltransferase catalytic subunit low > 62
Rhodanobacter denitrificans MT42 0.26 LRK55_RS09960 dihydroxy-acid dehydratase 0.36 LRK55_RS03990 aspartate carbamoyltransferase catalytic subunit — —
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS10320 dihydroxy-acid dehydratase 0.36 LRK54_RS04220 aspartate carbamoyltransferase catalytic subunit — —
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS10030 dihydroxy-acid dehydratase 0.58 A4249_RS04260 aspartate carbamoyltransferase catalytic subunit — —

Not shown: 1 genomes with orthologs for PGA1_c29490 only; 2 genomes with orthologs for PGA1_c03060 only