Conservation of cofitness between DZA65_RS19385 and DZA65_RS20655 in Dickeya dianthicola ME23

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS20655 aspartate aminotransferase family protein 0.86 8
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.99 HGI48_RS19570 aspartate aminotransferase family protein low > 71
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.98 DDA3937_RS19450 aspartate aminotransferase family protein low > 74
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.86 HER17_RS01910 aspartate aminotransferase family protein low > 75
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.79 EX31_RS04630 aspartate aminotransferase family protein 0.84 79
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.79 BWI76_RS26000 aspartate aminotransferase family protein low > 92
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.78 EX28DRAFT_4170 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.84 IAI46_23590 aspartate aminotransferase family protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.78 OHPLBJKB_00343 Acetylornithine/succinyldiaminopimelate aminotransferase low > 73
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.78 ECD_03210 bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase low > 61
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.78 b3359 argD bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase (NCBI) low > 76
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.78 NOLOHH_09030 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 75
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.78 MCAODC_07760 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 87
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.78 KEDOAH_10910 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.78 JDDGAC_20860 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.79 GFF3710 Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) low > 78
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.78 OKFHMN_17230 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 80
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.78 NIAGMN_15000 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.78 BNILDI_02490 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 75
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.78 HEPCGN_16055 argD,dapC bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 87
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.78 ECOLIN_RS19240 bifunctional acetylornithine/succinyldiaminopimelate transaminase low > 55
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.78 EFB2_00463 Acetylornithine/succinyldiaminopimelate aminotransferase low > 86
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.78 MPMX20_04262 Acetylornithine/succinyldiaminopimelate aminotransferase low > 85
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.79 IAI47_01955 aspartate aminotransferase family protein low > 76
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.78 LU632_RS22810 aspartate aminotransferase family protein 0.66 37
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.63 CSW01_13250 aspartate aminotransferase family protein low > 62
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.64 Sama_3011 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) low > 62
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.64 Shew_0578 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.76 SO1141 carA carbamoyl-phosphate synthase, small subunit (NCBI ptt file) 0.64 SO0617 argD acetylornithine aminotransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.74 Shewana3_0967 carbamoyl phosphate synthase small subunit (RefSeq) 0.64 Shewana3_0610 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_0615 carbamoyl-phosphate synthase, small subunit 0.63 B158DRAFT_2221 acetylornithine and succinylornithine transaminases/succinylornithine transaminase family
Alteromonas macleodii MIT1002 0.72 MIT1002_01466 Carbamoyl-phosphate synthase small chain 0.64 MIT1002_00437 Succinylornithine transaminase/acetylornithine aminotransferase 0.98 15
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.65 AO353_03025 acetylornithine aminotransferase
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.65 Psest_2719 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.67 OH686_21290 Succinylornithine transaminase
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.66 PfGW456L13_1971 Succinylornithine transaminase (EC 2.6.1.81)
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.67 Pf6N2E2_5665 Succinylornithine transaminase (EC 2.6.1.81)
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.65 Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81) (from data)
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.67 AO356_18725 acetylornithine aminotransferase
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.68 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.68 Psyr_3565 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.67 PP_4481 Succinylornithine transaminase/acetylornithine aminotransferase low > 96
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.66 PS417_21710 Succinylornithine transaminase (EC 2.6.1.81) (from data)
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.66 PFLU_RS23315 aspartate aminotransferase family protein
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.65 PFR28_03283 Succinylornithine transaminase/acetylornithine aminotransferase
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.60 HP15_3042 acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data) low > 73
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.66 PFLU_RS23315 aspartate aminotransferase family protein
Dechlorosoma suillum PS 0.68 Dsui_3065 carbamoyl-phosphate synthase, small subunit 0.35 Dsui_0023 acetylornithine/succinylornithine aminotransferase
Acinetobacter radioresistens SK82 0.68 MPMX26_00767 Carbamoyl-phosphate synthase small chain 0.60 MPMX26_02251 Succinylornithine transaminase low > 36
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.33 RR42_RS16955 acetylornithine aminotransferase
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.33 HSERO_RS16670 acetylornithine aminotransferase
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.47 LRK55_RS06335 acetylornithine/succinylornithine family transaminase
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.48 ABIE51_RS17420 acetylornithine/succinyldiaminopimelate transaminase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2914.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.45 Xcc-8004.1117.1 hypothetical protein
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 LRK54_RS06590 acetylornithine/succinylornithine family transaminase
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14150 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.33 ABZR87_RS00285 acetylornithine transaminase
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05605 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.45 ABZR86_RS17400 acetylornithine transaminase
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.33 Ac3H11_1332 Acetylornithine aminotransferase (EC 2.6.1.11)
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.33 RPSI07_RS12720 acetylornithine transaminase
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.61 QEN71_RS23375 aspartate aminotransferase family protein
Ralstonia solanacearum UW163 0.64 UW163_RS15510 carbamoyl-phosphate synthase small subunit 0.34 UW163_RS09005 acetylornithine transaminase
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02200 carbamoyl-phosphate synthase small subunit 0.34 RALBFv3_RS04665 acetylornithine transaminase
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.44 OKGIIK_17070 astC acetylornithine transaminase low > 52
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.32 RS_RS12225 aspartate aminotransferase family protein
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF4899 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.32 GFF3420 Acetylornithine aminotransferase (EC 2.6.1.11)
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.31 ABID97_RS08635 aspartate aminotransferase family protein
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.32 GFF3927 N-acetylornithine aminotransferase (EC 2.6.1.11)
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04402 carbamoyl-phosphate synthase small subunit 0.61 H281DRAFT_06478 succinylornithine aminotransferase apoenzyme
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.61 BPHYT_RS07695 acetylornithine aminotransferase
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.61 ABIE53_001769 succinylornithine aminotransferase
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.34 ABCV34_RS12095 acetylornithine transaminase
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.39 AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from data)
Azospirillum sp. SherDot2 0.51 MPMX19_00757 Carbamoyl-phosphate synthase small chain 0.39 MPMX19_02177 Succinylornithine transaminase/acetylornithine aminotransferase
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.39 AMB_RS01605 aspartate aminotransferase family protein
Rhodospirillum rubrum S1H 0.48 Rru_A2885 Carbamoyl-phosphate synthase, small subunit (NCBI) 0.39 Rru_A1147 Acetylornithine and succinylornithine aminotransferase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.48 TX73_006555 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.41 TX73_024810 aspartate aminotransferase family protein
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.39 PGA1_c24230 acetylornithine aminotransferase ArgD 0.89 2
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.40 Ga0059261_3205 transaminase, acetylornithine/succinylornithine family
Sinorhizobium meliloti 1021 0.47 SMc01569 carbamoyl phosphate synthase small subunit 0.39 SMc02138 acetylornithine transaminase 0.68 22
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS16140 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.37 A4249_RS11925 aspartate aminotransferase family protein
Dinoroseobacter shibae DFL-12 0.47 Dshi_2387 carbamoyl-phosphate synthase, small subunit (RefSeq) 0.37 Dshi_0798 acetylornithine and succinylornithine aminotransferase (RefSeq)
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 ABIE41_RS04340 aspartate aminotransferase family protein
Rhizobium sp. OAE497 0.45 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 ABIE40_RS02320 aspartate aminotransferase family protein
Agrobacterium fabrum C58 0.45 Atu2170 carbamoylphosphate synthase small chain 0.41 Atu0428 acetylornithine aminotransferase
Caulobacter crescentus NA1000 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.41 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.41 CCNA_00620 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase low > 67
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_2122 carA carbamoyl phosphate synthase small subunit 0.37 Synpcc7942_0943 argD acetylornithine aminotransferase
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_19490 carbamoyl phosphate synthase small subunit 0.27 CA264_15645 ornithine--oxo-acid transaminase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU3113 carA carbamoyl-phosphate synthase, small subunit (TIGR) 0.33 DVU2347 argD acetylornithine aminotransferase (TIGR)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS17830 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.25 ABZR88_RS15500 aspartate aminotransferase family protein
Bifidobacterium breve UCC2003 0.39 BBR_RS13630 carbamoyl-phosphate synthase small subunit 0.29 BBR_RS13900 acetylornithine transaminase 0.53 32
Methanococcus maripaludis JJ 0.37 MMJJ_RS06195 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 MMJJ_RS08660 acetylornithine transaminase
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2370 carbamoyl phosphate synthase small subunit (RefSeq) 0.33 DvMF_3149 acetylornithine aminotransferase (RefSeq) 0.70 24
Methanococcus maripaludis S2 0.37 MMP_RS08170 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.42 MMP_RS05690 acetylornithine transaminase
Mycobacterium tuberculosis H37Rv 0.36 Rv1383 Probable carbamoyl-phosphate synthase small chain CarA (carbamoyl-phosphate synthetase glutamine chain) 0.34 Rv1655 Probable acetylornithine aminotransferase ArgD
Bacteroides ovatus ATCC 8483 0.34 BACOVA_03753 carbamoyl-phosphate synthase, small subunit 0.26 BACOVA_03588 aminotransferase, class III low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS20670 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 ABI39_RS02965 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS06875 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.28 HMPREF1058_RS08835 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.27 HMPREF1078_RS10585 aspartate aminotransferase family protein low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.27 HMPREF1181_RS03445 aspartate aminotransferase family protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.27 BT3758 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) low > 81

Not shown: 3 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS20655 only