Conservation of cofitness between CSW01_02875 and CSW01_12250 in Vibrio cholerae E7946 ATCC 55056

116 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_12250 site-specific tyrosine recombinase XerD 0.64 3
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.71 HER17_RS17890 site-specific tyrosine recombinase XerD 0.85 2
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.70 EX31_RS13480 site-specific tyrosine recombinase XerD low > 89
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.68 DDA3937_RS03300 site-specific tyrosine recombinase XerD low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.68 DZA65_RS03485 site-specific tyrosine recombinase XerD — —
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.68 HGI48_RS03440 site-specific tyrosine recombinase XerD low > 71
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.70 LU632_RS05975 xerD site-specific tyrosine recombinase XerD — —
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.56 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.71 IJEDHG_03195 xerD site-specific tyrosine recombinase XerD — —
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.68 MPMX20_03753 Tyrosine recombinase XerD 0.51 24
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.68 EX28DRAFT_2945 tyrosine recombinase XerD — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS16670 recombinase RecA 0.69 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.67 GFF2991 Tyrosine recombinase XerD — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.68 KDGMDA_04300 site-specific tyrosine recombinase XerD low > 95
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.56 Shewana3_3331 tyrosine recombinase XerD (RefSeq) low > 73
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.69 IAI47_03820 site-specific tyrosine recombinase XerD low > 76
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.68 BWI76_RS23815 site-specific tyrosine recombinase XerD — —
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.67 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD low > 76
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.67 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.67 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.67 BNILDI_10025 xerD site-specific tyrosine recombinase XerD low > 75
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.67 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.47 8
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.67 ECOLIN_RS16125 site-specific tyrosine recombinase XerD — —
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.67 EFB2_01007 Tyrosine recombinase XerD low > 86
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.68 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.67 OHPLBJKB_00821 Tyrosine recombinase XerD low > 74
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.67 ECD_02726 site-specific tyrosine recombinase low > 61
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.67 MCAODC_10090 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.67 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD — —
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.67 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD — —
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.55 Sama_2739 integrase/recombinase XerD (RefSeq) 0.46 20
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.70 OLJFJH_08835 site-specific tyrosine recombinase XerD low > 58
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.54 Shew_0770 tyrosine recombinase XerD (RefSeq) low > 60
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.69 IAI46_20730 site-specific tyrosine recombinase XerD low > 87
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.55 MIT1002_00786 Tyrosine recombinase XerD low > 70
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.58 AO356_06385 recombinase XerD 0.51 4
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.58 AO353_04365 recombinase XerD 0.46 6
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.58 Pf6N2E2_3145 Tyrosine recombinase XerD — —
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.58 PFR28_00331 Tyrosine recombinase XerD low > 88
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.56 OH686_17750 tyrosine recombinase XerD low > 80
Pseudomonas aeruginosa MRSN321 0.73 DY961_RS14895 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.56 DY961_RS14280 xerD;go_function=site-specific site-specific tyrosine recombinase XerD low > 100
Pseudomonas aeruginosa PUPa3 0.73 DQ20_RS42235 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.56 DQ20_RS42845 xerD;go_function=site-specific site-specific tyrosine recombinase XerD 0.51 13
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.56 IKLFDK_19085 site-specific tyrosine recombinase XerD — —
Pseudomonas segetis P6 0.73 ACVTMO_RS16500 recA recombinase RecA 0.55 ACVTMO_RS07795 xerD site-specific tyrosine recombinase XerD 0.75 1
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.58 GFF1987 Tyrosine recombinase XerD low > 89
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.57 GEMAOFIL_04729 Tyrosine recombinase XerD low > 96
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.58 COO64_RS04910 xerD site-specific tyrosine recombinase XerD low > 93
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD low > 87
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.58 PfGW456L13_1721 Tyrosine recombinase XerD low > 87
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD low > 109
Pseudomonas simiae WCS417 0.72 PS417_05815 recombinase RecA 0.57 PS417_22895 tyrosine recombinase XerD 0.43 30
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.51 B158DRAFT_2265 tyrosine recombinase XerD low > 40
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.54 Psest_3129 tyrosine recombinase XerD low > 67
Pseudomonas orientalis W4I3 0.72 QF045_RS08730 recombinase RecA 0.56 QF045_RS25085 site-specific tyrosine recombinase XerD low > 93
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.57 Psyr_1286 tyrosine recombinase XerD subunit 0.28 57
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.57 Psyr_1286 tyrosine recombinase XerD subunit low > 86
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.58 PP_1468 Tyrosine recombinase XerD 0.33 31
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.58 JOY50_RS11700 xerD site-specific tyrosine recombinase XerD low > 84
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.44 LRK54_RS04735 site-specific tyrosine recombinase XerD low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.44 LRK55_RS04515 site-specific tyrosine recombinase XerD low > 63
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.53 HP15_762 site-specific tyrosine recombinase XerD low > 73
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.44 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.43 LRK53_RS05285 site-specific tyrosine recombinase XerD — —
Acinetobacter baumannii LAC-4 0.71 RR41_RS08110 recombinase RecA 0.44 RR41_RS17765 site-specific tyrosine recombinase XerD — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.54 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.66 6
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.46 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.62 21
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.50 GFF2342 Tyrosine recombinase XerD low > 43
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.50 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.58 21
Rhizobium sp. OAE497 0.67 ABIE40_RS10320 recombinase RecA 0.38 ABIE40_RS17685 site-specific tyrosine recombinase XerD low > 107
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.48 Xcc-8004.4441.1 Tyrosine recombinase XerD — —
Sphingobium sp. HT1-2 0.67 GFF3120 RecA protein 0.30 GFF2416 Site-specific tyrosine recombinase XerD low > 95
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.51 BPHYT_RS15950 tyrosine recombinase XerD — —
Agrobacterium fabrum C58 0.66 Atu1874 RecA protein 0.35 Atu3629 site-specific tyrosine recombinase XerD — —
Rhodospirillum rubrum S1H 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) 0.33 Rru_A3738 Phage integrase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.66 Ga0059261_0204 protein RecA 0.30 Ga0059261_3595 Site-specific recombinase XerD 0.45 12
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.50 H281DRAFT_04126 integrase/recombinase XerD — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.50 QEN71_RS02755 site-specific tyrosine recombinase XerD — —
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.50 ABIE53_003361 integrase/recombinase XerD 0.73 3
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.49 Dsui_1217 tyrosine recombinase XerD low > 51
Azospirillum brasilense Sp245 0.66 AZOBR_RS11095 recombinase RecA 0.34 AZOBR_RS03240 recombinase XerD 0.61 4
Sinorhizobium meliloti 1021 0.66 SMc00760 recombinase A 0.36 SMc00691 site-specific tyrosine recombinase XerD 0.46 13
Azospirillum sp. SherDot2 0.66 MPMX19_00869 Protein RecA 0.38 MPMX19_02643 Tyrosine recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.66 TX73_019940 recombinase RecA 0.36 TX73_002625 site-specific tyrosine recombinase XerD — —
Xanthobacter sp. DMC5 0.65 GFF1169 Protein RecA 0.35 GFF3081 Tyrosine recombinase XerD — —
Magnetospirillum magneticum AMB-1 0.65 AMB_RS03205 DNA recombination/repair protein RecA 0.31 AMB_RS19880 site-specific tyrosine recombinase XerD low > 64
Phaeobacter inhibens DSM 17395 0.65 PGA1_c15260 protein recA (recombinase A) 0.31 PGA1_c14060 tyrosine recombinase XerD 0.46 12
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.48 HSERO_RS04265 tyrosine recombinase XerD 0.50 17
Brevundimonas sp. GW460-12-10-14-LB2 0.64 A4249_RS12615 recombinase RecA 0.30 A4249_RS04165 site-specific tyrosine recombinase XerD — —
Variovorax sp. SCN45 0.64 GFF5390 RecA protein 0.47 GFF2772 Site-specific tyrosine recombinase XerD 0.64 86
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.47 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.52 21
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.51 RPSI07_RS12160 site-specific tyrosine recombinase XerD low > 81
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.48 Ac3H11_302 Tyrosine recombinase XerD — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.46 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.54 37
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.50 UW163_RS08485 site-specific tyrosine recombinase XerD — —
Bosea sp. OAE506 0.63 ABIE41_RS13335 recombinase RecA 0.32 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.62 16
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.50 RALBFv3_RS05140 site-specific tyrosine recombinase XerD low > 76
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.48 RR42_RS03345 recombinase XerD low > 128
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.50 RS_RS12755 tyrosine recombinase XerD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.46 GFF5461 Tyrosine recombinase XerD low > 90
Bifidobacterium breve UCC2003 0.61 BBR_RS16530 recombinase RecA 0.33 BBR_RS16755 site-specific tyrosine recombinase XerD low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_19695 DNA recombination/repair protein RecA 0.34 CA264_00850 site-specific tyrosine recombinase XerD — —
Caulobacter crescentus NA1000 0.60 CCNA_01141 RecA protein 0.31 CCNA_03101 site-specific tyrosine recombinase XerD 0.54 19
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_01141 RecA protein 0.31 CCNA_03101 site-specific tyrosine recombinase XerD — —
Dinoroseobacter shibae DFL-12 0.60 Dshi_1643 recA protein (RefSeq) 0.33 Dshi_1611 integrase family protein (RefSeq) 0.61 6
Cellulophaga baltica 18 0.59 M666_RS05260 recombinase RecA 0.31 M666_RS11310 site-specific tyrosine recombinase XerD low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.57 ABZR88_RS16740 recombinase RecA 0.32 ABZR88_RS10220 site-specific tyrosine recombinase XerD low > 71
Phocaeicola dorei CL03T12C01 0.57 ABI39_RS11930 recombinase RecA 0.32 ABI39_RS07000 site-specific tyrosine recombinase XerD low > 72
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS15965 recombinase RecA 0.32 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.56 CA265_RS00600 recombinase RecA 0.34 CA265_RS09520 site-specific tyrosine recombinase XerD 0.39 26
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_0044 protein RecA 0.31 Echvi_1809 tyrosine recombinase XerD 0.41 31
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS00095 recombinase RecA 0.34 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD 0.78 49
Bacteroides thetaiotaomicron VPI-5482 0.55 BT4610 RecA (NCBI ptt file) 0.33 BT2843 integrase (NCBI ptt file) 0.55 6
Bacteroides ovatus ATCC 8483 0.55 BACOVA_05402 RecA protein 0.33 BACOVA_02123 tyrosine recombinase XerD 0.82 12
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11910 recombinase RecA 0.33 HMPREF1181_RS01250 site-specific tyrosine recombinase XerD low > 56
Desulfovibrio vulgaris Hildenborough JW710 0.55 DVU1090 recA recA protein (TIGR) 0.33 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0876 recA recombinase A (RefSeq) 0.33 DvMF_0359 tyrosine recombinase XerD (RefSeq) low > 51

Not shown: 4 genomes with orthologs for CSW01_02875 only; 3 genomes with orthologs for CSW01_12250 only