Conservation of cofitness between CSW01_03200 and CSW01_06875 in Vibrio cholerae E7946 ATCC 55056

110 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03200 ammonium transporter 1.0 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 0.57 13
Shewanella sp. ANA-3 0.81 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) 0.72 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.81 SO0760 amt ammonium transporter (NCBI ptt file) 0.72 SO2503 exsB exsB protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.80 Shew_0847 Rh family protein/ammonium transporter (RefSeq) 0.72 Shew_2062 exsB protein (RefSeq) — —
Shewanella amazonensis SB2B 0.79 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.76 Sama_1826 ExsB protein (RefSeq) low > 62
Pseudomonas segetis P6 0.64 MPMX49_04539 Ammonia channel 0.29 MPMX49_01694 7-cyano-7-deazaguanine synthase low > 75
Pseudomonas stutzeri RCH2 0.64 Psest_3771 probable ammonium transporter, marine subtype 0.30 Psest_1506 queuosine biosynthesis protein QueC low > 67
Pseudomonas sp. S08-1 0.62 OH686_13765 Ammonium transporter 0.30 OH686_19180 queuosine biosynthesis protein QueC low > 80
Marinobacter adhaerens HP15 0.60 HP15_274 ammonium/methylammonium permease 0.25 HP15_3814 ExsB protein low > 73
Alteromonas macleodii MIT1002 0.56 MIT1002_00417 Ammonia transporter 0.29 MIT1002_01263 7-cyano-7-deazaguanine synthase low > 70
Phaeobacter inhibens DSM 17395 0.48 PGA1_c29410 ammonium transporter 0.17 PGA1_c05600 queuosine biosynthesis protein QueC low > 62
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS16015 ammonium transporter 0.55 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC low > 56
Bacteroides thetaiotaomicron VPI-5482 0.37 BT0544 ammonium transporter (NCBI ptt file) 0.53 BT1566 putative aluminum resistance protein (NCBI ptt file) — —
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_0442 amt1 ammonium transporter 0.22 Synpcc7942_1333 ExsB low > 38
Synechocystis sp000284455 PCC 6803 0.36 SGL_RS15695 ammonium transporter 0.24 SGL_RS16620 7-cyano-7-deazaguanine synthase QueC low > 52
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS06895 ammonium transporter 0.54 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC low > 67
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS14275 ammonium transporter 0.54 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC low > 72
Rhodospirillum rubrum S1H 0.29 Rru_A0554 Rh-like protein/ammonium transporter (NCBI) 0.26 Rru_A1957 ExsB (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.28 DvMF_3023 ammonium transporter (RefSeq) 0.41 DvMF_1125 exsB protein (RefSeq) low > 51
Acidovorax sp. GW101-3H11 0.26 Ac3H11_1462 Ammonium transporter 0.41 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase low > 79
Variovorax sp. SCN45 0.25 GFF6676 Ammonium transporter 0.45 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 127
Acinetobacter radioresistens SK82 0.25 MPMX26_00674 Ammonia channel 0.27 MPMX26_02175 7-cyano-7-deazaguanine synthase low > 36
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS23255 ammonium transporter 0.43 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC low > 153
Acinetobacter baumannii LAC-4 0.24 RR41_RS03785 ammonium transporter 0.29 RR41_RS04750 7-cyano-7-deazaguanine synthase QueC low > 55
Magnetospirillum magneticum AMB-1 0.24 AMB_RS09935 ammonium transporter 0.26 AMB_RS20345 7-cyano-7-deazaguanine synthase low > 64
Methanococcus maripaludis JJ 0.23 MMJJ_RS05110 ammonium transporter 0.19 MMJJ_RS04135 7-cyano-7-deazaguanine synthase QueC low > 28
Methanococcus maripaludis S2 0.23 MMP_RS00375 ammonium transporter 0.20 MMP_RS01240 7-cyano-7-deazaguanine synthase QueC low > 25
Paraburkholderia graminis OAS925 0.23 ABIE53_001796 Amt family ammonium transporter 0.44 ABIE53_000396 7-cyano-7-deazaguanine synthase low > 113
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_01859 Ammonia channel 0.69 GEMAOFIL_04820 7-cyano-7-deazaguanine synthase low > 96
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_05071 ammonium transporter 0.44 H281DRAFT_02232 preQ(0) biosynthesis protein QueC low > 103
Pseudomonas orientalis W4I3 0.23 QF045_RS11350 ammonium transporter 0.72 QF045_RS25625 7-cyano-7-deazaguanine synthase QueC low > 93
Methylophilus sp. DMC18 0.22 GFF105 Ammonia channel 0.41 GFF1367 7-cyano-7-deazaguanine synthase low > 43
Burkholderia phytofirmans PsJN 0.22 BPHYT_RS07910 ammonium transporter 0.45 BPHYT_RS01500 7-cyano-7-deazaguanine synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.22 PFLU_RS08590 ammonium transporter 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS02900 ammonium transporter 0.44 HSERO_RS20880 7-cyano-7-deazaguanine synthase low > 78
Pseudomonas simiae WCS417 0.22 PS417_08635 ammonium transporter 0.28 PS417_22400 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas fluorescens SBW25 0.22 PFLU_RS08590 ammonium transporter 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Dechlorosoma suillum PS 0.22 Dsui_1062 ammonia permease 0.26 Dsui_0549 queuosine biosynthesis protein QueC low > 51
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_19220 ammonium transporter 0.70 AO353_22170 7-cyano-7-deazaguanine synthase low > 101
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS06040 ammonium transporter 0.27 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC low > 80
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_2267 Ammonium transporter 0.28 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas sp. DMC3 0.22 GFF4581 Ammonia channel 0.28 GFF5175 7-cyano-7-deazaguanine synthase low > 89
Pseudomonas sp. SVBP6 0.21 COO64_RS05245 ammonium transporter 0.28 COO64_RS20145 queC 7-cyano-7-deazaguanine synthase QueC low > 93
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS28950 ammonium transporter 0.27 RR42_RS15445 7-cyano-7-deazaguanine synthase low > 128
Serratia liquefaciens MT49 0.21 IAI46_05085 ammonium transporter AmtB 0.70 IAI46_05045 7-cyano-7-deazaguanine synthase QueC low > 87
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_243 Ammonium transporter 0.70 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_03020 ammonium transporter 0.30 AO356_18070 7-cyano-7-deazaguanine synthase low > 104
Pseudomonas aeruginosa PUPa3 0.21 DQ20_RS33815 ammonium transporter 0.29 DQ20_RS45240 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC low > 101
Pseudomonas aeruginosa MRSN321 0.21 DY961_RS01760 ammonium transporter 0.29 DY961_RS07550 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC low > 100
Pseudomonas aeruginosa PA14 0.21 IKLFDK_15465 ammonium transporter 0.29 IKLFDK_04420 7-cyano-7-deazaguanine synthase QueC low > 98
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_2430 Ammonium transporter 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase low > 103
Pseudomonas sp. RS175 0.21 PFR28_00998 Ammonia channel 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase low > 88
Erwinia amylovora T8 0.20 OLJFJH_17905 ammonium transporter AmtB 0.68 OLJFJH_17935 7-cyano-7-deazaguanine synthase QueC low > 58
Pectobacterium carotovorum WPP14 0.20 HER17_RS15785 ammonium transporter AmtB 0.69 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC low > 75
Dickeya dianthicola 67-19 0.20 HGI48_RS05745 ammonium transporter AmtB 0.67 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC low > 71
Dickeya dianthicola ME23 0.20 DZA65_RS06070 ammonium transporter AmtB 0.67 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC low > 75
Erwinia tracheiphila SCR3 0.20 LU632_RS18270 amtB ammonium transporter AmtB 0.69 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC low > 73
Erwinia tracheiphila HP pepo 2.2 0.20 IJEDHG_16515 amtB ammonium transporter AmtB 0.69 IJEDHG_16475 queC 7-cyano-7-deazaguanine synthase QueC low > 61
Rahnella sp. WP5 0.20 EX31_RS22320 ammonium transporter AmtB 0.70 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC low > 89
Klebsiella pneumoniae MKP103 0.20 KDGMDA_14685 ammonium transporter AmtB 0.69 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC low > 95
Pseudomonas sp. BP01 0.20 JOY50_RS22045 ammonium transporter 0.28 JOY50_RS01770 queC 7-cyano-7-deazaguanine synthase QueC low > 84
Enterobacter asburiae PDN3 0.20 EX28DRAFT_2518 ammonium transporter 0.69 EX28DRAFT_2526 queuosine biosynthesis protein QueC low > 76
Pseudomonas putida KT2440 0.20 PP_2106 putative Ammonium transporter 0.28 PP_1226 pre-queuosine 0 synthase low > 96
Enterobacter sp. TBS_079 0.20 MPMX20_01043 Ammonia channel 0.69 MPMX20_01035 7-cyano-7-deazaguanine synthase low > 85
Klebsiella michiganensis M5al 0.20 BWI76_RS06605 ammonium transporter 0.70 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC low > 92
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1231 amt ammonium transporter (TIGR) 0.42 DVU2659 exsB protein (TIGR) low > 55
Escherichia coli Nissle 1917 0.20 ECOLIN_RS02700 ammonium transporter AmtB 0.71 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC low > 55
Escherichia fergusonii Becca 0.20 EFB2_03606 Ammonia channel 0.71 EFB2_03613 7-cyano-7-deazaguanine synthase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF4368 Ammonium transporter 0.70 GFF4360 Queuosine Biosynthesis QueC ATPase low > 78
Escherichia coli ECOR27 0.19 NOLOHH_01195 amtB ammonium transporter AmtB 0.71 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC low > 76
Escherichia coli ECRC98 0.19 JDDGAC_11915 amtB ammonium transporter AmtB 0.70 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC low > 87
Escherichia coli BW25113 0.19 b0451 amtB ammonium transporter (NCBI) 0.71 b0444 ybaX predicted aluminum resistance protein (NCBI) low > 76
Escherichia coli ECOR38 0.19 HEPCGN_06875 amtB ammonium transporter AmtB 0.71 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC low > 88
Escherichia coli ECRC62 0.19 BNILDI_22610 amtB ammonium transporter AmtB 0.71 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC low > 75
Escherichia coli ECRC102 0.19 NIAGMN_06315 amtB ammonium transporter AmtB 0.70 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC low > 80
Escherichia coli ECRC101 0.19 MCAODC_27485 amtB ammonium transporter AmtB 0.70 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC low > 87
Escherichia coli ECRC99 0.19 KEDOAH_19705 amtB ammonium transporter AmtB 0.70 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03222 Ammonia channel 0.71 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase low > 74
Escherichia coli ECRC100 0.19 OKFHMN_08260 amtB ammonium transporter AmtB 0.70 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC low > 79
Escherichia coli BL21 0.19 ECD_00403 ammonium transporter 0.70 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis low > 61
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS09495 ammonium transporter 0.27 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC low > 74
Azospirillum sp. SherDot2 0.19 MPMX19_01885 Ammonia channel 0.26 MPMX19_00425 7-cyano-7-deazaguanine synthase low > 112
Pantoea sp. MT58 0.19 IAI47_14580 ammonium transporter AmtB 0.72 IAI47_14620 7-cyano-7-deazaguanine synthase QueC low > 76
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS10615 ammonium transporter AmtB 0.70 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC low > 74
Rhodopseudomonas palustris CGA009 0.18 TX73_001425 ammonium transporter 0.42 TX73_014550 7-cyano-7-deazaguanine synthase QueC low > 86
Dickeya dadantii 3937 0.18 DDA3937_RS05700 ammonium transporter AmtB 0.68 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC low > 74
Azospirillum brasilense Sp245 0.18 AZOBR_RS00845 ammonia channel protein 0.24 AZOBR_RS04150 7-cyano-7-deazaguanine synthase low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS09990 ammonium transporter 0.40 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC — —
Lysobacter sp. OAE881 0.18 ABIE51_RS01435 ammonium transporter 0.28 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC low > 62
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.249.1 Ammonium transporter 0.28 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_2277 ammonium transporter 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_2277 ammonium transporter 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Ralstonia solanacearum IBSBF1503 0.17 RALBFv3_RS10850 ammonia channel protein 0.28 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC low > 76
Ralstonia solanacearum UW163 0.17 UW163_RS02730 ammonia channel protein 0.28 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS07860 ammonium transporter 0.26 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC low > 63
Rhodanobacter denitrificans FW104-10B01 0.17 LRK54_RS08110 ammonium transporter 0.26 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC low > 59
Ralstonia solanacearum GMI1000 0.17 RS_RS01690 ammonium transporter 0.27 RS_RS03715 7-cyano-7-deazaguanine synthase low > 80
Ralstonia solanacearum PSI07 0.17 RPSI07_RS22460 ammonia channel protein 0.27 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC low > 81
Rhodanobacter sp000427505 FW510-R12 0.17 LRK53_RS00315 ammonium transporter 0.26 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC low > 59
Sinorhizobium meliloti 1021 0.16 SMc03807 ammonium transporter 0.17 SM_b20940 hypothetical protein low > 103
Sphingomonas koreensis DSMZ 15582 0.16 Ga0059261_2256 ammonium transporter 0.24 Ga0059261_3209 queuosine biosynthesis protein QueC low > 68
Rhodanobacter sp. FW510-T8 0.16 OKGIIK_14925 Ammonium transporter 0.26 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC low > 53
Bosea sp. OAE506 0.15 ABIE41_RS04755 ammonium transporter 0.41 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC low > 77
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF1922 Ammonium transporter 0.40 GFF1402 Queuosine Biosynthesis QueC ATPase low > 90
Sphingobium sp. HT1-2 0.15 GFF785 Ammonium transporter 0.23 GFF3749 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 95
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03766 ammonium transporter 0.53 BACOVA_04309 protein ExsB low > 96
Agrobacterium fabrum C58 0.14 Atu2758 ammonium transporter 0.18 Atu3346 succinoglycan biosynthesis regulator low > 89
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_01399 ammonium transporter/methylammonium transporter 0.40 CCNA_03262 queuosine biosynthesis protein QueC low > 67
Caulobacter crescentus NA1000 0.14 CCNA_01399 ammonium transporter/methylammonium transporter 0.40 CCNA_03262 queuosine biosynthesis protein QueC low > 66
Castellaniella sp019104865 MT123 0.14 ABCV34_RS04770 ammonium transporter 0.41 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC low > 48
Xanthobacter sp. DMC5 0.11 GFF3985 Ammonia channel 0.43 GFF3831 7-cyano-7-deazaguanine synthase — —

Not shown: 10 genomes with orthologs for CSW01_03200 only; 2 genomes with orthologs for CSW01_06875 only