Conservation of cofitness between CSW01_02875 and CSW01_05185 in Vibrio cholerae E7946 ATCC 55056

114 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_05185 excinuclease ABC subunit UvrB 0.55 16
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.77 HER17_RS13420 excinuclease ABC subunit B low > 75
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.77 EX31_RS23720 excinuclease ABC subunit B low > 89
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.75 DZA65_RS08990 excinuclease ABC subunit B — —
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.76 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.75 HGI48_RS08695 excinuclease ABC subunit B 0.46 38
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.77 IJEDHG_19590 uvrB excinuclease ABC subunit UvrB — —
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.74 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.77 LU632_RS09160 uvrB excinuclease ABC subunit B — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.76 EX28DRAFT_2211 Excinuclease ABC subunit B — —
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.76 MPMX20_01408 UvrABC system protein B low > 85
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS16670 recombinase RecA 0.76 PagCFBP13505_RS03805 excinuclease ABC subunit B low > 74
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.75 GFF675 Excinuclease ABC subunit B — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.75 KDGMDA_17050 excinuclease ABC subunit UvrB low > 95
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.76 IAI47_13505 excinuclease ABC subunit B low > 76
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.76 BWI76_RS08785 excinuclease ABC subunit B — —
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.76 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 76
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.76 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 88
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.76 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.76 MCAODC_25595 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.76 OHPLBJKB_02934 UvrABC system protein B low > 74
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.76 EFB2_03326 UvrABC system protein B low > 86
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.76 BNILDI_21020 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.76 b0779 uvrB excinuclease ABC subunit B (NCBI) low > 76
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.76 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.76 ECOLIN_RS04150 excinuclease ABC subunit UvrB — —
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.76 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.76 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component low > 61
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.76 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) low > 62
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.76 Shew_2064 excinuclease ABC subunit B (RefSeq) low > 60
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.75 OLJFJH_16735 excinuclease ABC subunit UvrB 0.43 10
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.78 IAI46_06550 excinuclease ABC subunit B low > 87
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.75 MIT1002_01261 Excinuclease ABC subunit B low > 70
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.73 PFR28_02837 UvrABC system protein B low > 88
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.72 Pf6N2E2_52 Excinuclease ABC subunit B — —
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.72 AO353_20545 excinuclease ABC subunit B low > 101
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.73 AO356_21335 excinuclease ABC subunit B 0.33 70
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.72 IKLFDK_15985 excinuclease ABC subunit UvrB low > 98
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.70 OH686_04580 excinuclease ABC subunit B low > 80
Pseudomonas aeruginosa PUPa3 0.73 DQ20_RS42235 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.72 DQ20_RS34340 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB low > 101
Pseudomonas aeruginosa MRSN321 0.73 DY961_RS14895 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA 0.72 DY961_RS01215 uvrB;go_component=excinuclease excinuclease ABC subunit UvrB low > 100
Pseudomonas segetis P6 0.73 MPMX49_03330 Protein RecA 0.71 MPMX49_03091 UvrABC system protein B low > 75
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.72 GFF774 UvrABC system protein B low > 89
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.72 Pf1N1B4_26 Excinuclease ABC subunit B low > 87
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.72 GEMAOFIL_03964 UvrABC system protein B low > 96
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.71 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.72 COO64_RS05730 uvrB excinuclease ABC subunit UvrB low > 93
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.72 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.72 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.72 Psest_1296 excinuclease ABC, B subunit 0.33 8
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.68 B158DRAFT_2341 Excinuclease ABC subunit B 0.60 18
Pseudomonas simiae WCS417 0.72 PS417_05815 recombinase RecA 0.72 PS417_18685 excinuclease ABC subunit B 0.42 34
Pseudomonas orientalis W4I3 0.72 QF045_RS08730 recombinase RecA 0.72 QF045_RS20805 excinuclease ABC subunit UvrB low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.72 Psyr_1974 Excinuclease ABC subunit B 0.54 2
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.72 Psyr_1974 Excinuclease ABC subunit B 0.34 13
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.72 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.72 JOY50_RS16715 uvrB excinuclease ABC subunit UvrB low > 84
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.69 LRK55_RS13955 excinuclease ABC subunit UvrB 0.79 35
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.70 HP15_1372 excinuclease ABC subunit B 0.26 26
Acinetobacter radioresistens SK82 0.71 MPMX26_01308 Protein RecA 0.66 MPMX26_02142 UvrABC system protein B low > 36
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.69 LRK54_RS14235 excinuclease ABC subunit UvrB low > 59
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.69 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.69 LRK53_RS14375 excinuclease ABC subunit UvrB — —
Acinetobacter baumannii LAC-4 0.71 RR41_RS08110 recombinase RecA 0.67 RR41_RS04945 excinuclease ABC subunit UvrB — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.67 ABIE51_RS15310 excinuclease ABC subunit UvrB low > 62
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.69 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.68 10
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.63 GFF1123 UvrABC system protein B low > 43
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.64 ABCV34_RS05110 excinuclease ABC subunit UvrB 0.60 14
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.69 Xcc-8004.2034.1 Excinuclease ABC subunit B — —
Sphingobium sp. HT1-2 0.67 GFF3120 RecA protein 0.56 GFF700 Excinuclease ABC subunit B low > 95
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.64 BPHYT_RS06905 excinuclease ABC subunit B — —
Rhodospirillum rubrum S1H 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) 0.58 Rru_A1133 Excinuclease ABC, B subunit (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.66 Ga0059261_0204 protein RecA 0.58 Ga0059261_3779 Excinuclease ABC subunit B 0.57 7
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.65 H281DRAFT_04973 Excinuclease ABC subunit B 0.53 19
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.65 QEN71_RS23870 excinuclease ABC subunit UvrB — —
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.65 ABIE53_001645 excinuclease ABC subunit B 0.81 1
Azospirillum brasilense Sp245 0.66 AZOBR_RS11095 recombinase RecA 0.61 AZOBR_RS16420 excinuclease ABC subunit B 0.41 42
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.66 Dsui_2434 excinuclease ABC, B subunit 0.78 10
Azospirillum sp. SherDot2 0.66 MPMX19_00869 Protein RecA 0.60 MPMX19_01038 UvrABC system protein B — —
Magnetospirillum magneticum AMB-1 0.65 AMB_RS03205 DNA recombination/repair protein RecA 0.59 AMB_RS19255 excinuclease ABC subunit UvrB low > 64
Phaeobacter inhibens DSM 17395 0.65 PGA1_c15260 protein recA (recombinase A) 0.57 PGA1_c26160 uvrABC system protein B 0.57 7
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.38 57
Brevundimonas sp. GW460-12-10-14-LB2 0.64 A4249_RS12615 recombinase RecA 0.58 A4249_RS00555 excinuclease ABC subunit UvrB low > 48
Variovorax sp. SCN45 0.64 GFF5390 RecA protein 0.62 GFF945 Excinuclease ABC subunit B 0.67 35
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.62 ABID97_RS13995 excinuclease ABC subunit UvrB low > 91
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.66 RPSI07_RS19240 excinuclease ABC subunit UvrB low > 81
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.66 ABZR87_RS09940 excinuclease ABC subunit UvrB 0.70 2
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.63 Ac3H11_4114 Excinuclease ABC subunit B — —
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.66 UW163_RS11690 excinuclease ABC subunit UvrB — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.66 RALBFv3_RS14225 excinuclease ABC subunit UvrB low > 76
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.65 RS_RS05005 UvrABC system protein B — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.65 RR42_RS05995 excinuclease ABC subunit B 0.38 21
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.63 GFF4962 Excinuclease ABC subunit B low > 90
Bifidobacterium breve UCC2003 0.61 BBR_RS16530 recombinase RecA 0.51 BBR_RS14285 excinuclease ABC subunit UvrB low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_19695 DNA recombination/repair protein RecA 0.53 CA264_19110 excinuclease ABC subunit B — —
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_01141 RecA protein 0.60 CCNA_03076 excinuclease ABC subunit B — —
Dinoroseobacter shibae DFL-12 0.60 Dshi_1643 recA protein (RefSeq) 0.58 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.65 2
Caulobacter crescentus NA1000 0.60 CCNA_01141 RecA protein 0.60 CCNA_03076 excinuclease ABC subunit B 0.62 12
Synechocystis sp000284455 PCC 6803 0.59 SGL_RS18280 recombinase RecA 0.54 SGL_RS14040 excinuclease ABC subunit UvrB — —
Cellulophaga baltica 18 0.59 M666_RS05260 recombinase RecA 0.54 M666_RS19015 excinuclease ABC subunit UvrB low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.57 ABZR88_RS16740 recombinase RecA 0.54 ABZR88_RS18110 excinuclease ABC subunit UvrB 0.70 5
Phocaeicola dorei CL03T12C01 0.57 ABI39_RS11930 recombinase RecA 0.52 ABI39_RS15300 excinuclease ABC subunit UvrB low > 72
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS15965 recombinase RecA 0.52 HMPREF1058_RS01765 excinuclease ABC subunit UvrB low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.56 CA265_RS00600 recombinase RecA 0.55 CA265_RS19430 excinuclease ABC subunit B 0.69 6
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_0044 protein RecA 0.54 Echvi_1215 excinuclease ABC, B subunit 0.52 9
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_0348 recA recombinase A 0.56 Synpcc7942_0563 uvrB excinuclease ABC subunit B — —
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS00095 recombinase RecA 0.55 HMPREF1078_RS15855 excinuclease ABC subunit UvrB low > 61
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11910 recombinase RecA 0.51 HMPREF1181_RS15225 excinuclease ABC subunit UvrB low > 56
Bacteroides thetaiotaomicron VPI-5482 0.55 BT4610 RecA (NCBI ptt file) 0.52 BT0570 excinuclease ABC subunit B (NCBI ptt file) 0.53 13
Bacteroides ovatus ATCC 8483 0.55 BACOVA_05402 RecA protein 0.52 BACOVA_03714 excinuclease ABC, B subunit low > 96
Desulfovibrio vulgaris Hildenborough JW710 0.55 DVU1090 recA recA protein (TIGR) 0.57 DVU1605 uvrB excinuclease ABC, B subunit (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_0876 recA recombinase A (RefSeq) 0.57 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.49 7
Fusobacterium nucleatum SB010 0.52 HUW76_07355 recombinase RecA 0.55 HUW76_02625 excinuclease ABC subunit UvrB low > 35

Not shown: 6 genomes with orthologs for CSW01_02875 only; 3 genomes with orthologs for CSW01_05185 only