| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_05185 | | excinuclease ABC subunit UvrB | 1.0 | CSW01_02875 | | DNA recombination/repair protein RecA | 0.55 | 5 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_06550 | | excinuclease ABC subunit B | 0.80 | IAI46_03840 | | recombinase RecA | 0.49 | 24 |
| Erwinia tracheiphila SCR3 | 0.77 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.81 | LU632_RS15735 | recA | recombinase RecA | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.77 | IJEDHG_19590 | uvrB | excinuclease ABC subunit UvrB | 0.81 | IJEDHG_01625 | recA | recombinase RecA | — | — |
| Pectobacterium carotovorum WPP14 | 0.77 | HER17_RS13420 | | excinuclease ABC subunit B | 0.83 | HER17_RS05045 | | recombinase RecA | 0.48 | 70 |
| Rahnella sp. WP5 | 0.77 | EX31_RS23720 | | excinuclease ABC subunit B | 0.82 | EX31_RS07800 | | recombinase RecA | low | > 89 |
| Pantoea agglomerans CFBP13505 P0401 | 0.76 | PagCFBP13505_RS03805 | | excinuclease ABC subunit B | 0.81 | PagCFBP13505_RS16670 | | recombinase RecA | low | > 74 |
| Pantoea sp. MT58 | 0.76 | IAI47_13505 | | excinuclease ABC subunit B | 0.80 | IAI47_04300 | | recombinase RecA | low | > 76 |
| Escherichia coli BW25113 | 0.76 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.80 | b2699 | recA | recombinase A (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.76 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.80 | MCAODC_11230 | recA | recombinase RecA | low | > 87 |
| Escherichia coli ECRC62 | 0.76 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.80 | BNILDI_11105 | recA | recombinase RecA | low | > 75 |
| Escherichia coli ECOR27 | 0.76 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.80 | NOLOHH_12545 | recA | recombinase RecA | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.76 | OHPLBJKB_02934 | | UvrABC system protein B | 0.80 | OHPLBJKB_01035 | | Protein RecA | low | > 74 |
| Escherichia coli ECRC100 | 0.76 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.80 | OKFHMN_20705 | recA | recombinase RecA | — | — |
| Escherichia coli Nissle 1917 | 0.76 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.80 | ECOLIN_RS15060 | | recombinase RecA | — | — |
| Escherichia coli BL21 | 0.76 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.80 | ECD_02549 | | DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor | low | > 61 |
| Escherichia coli ECRC99 | 0.76 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.80 | KEDOAH_07430 | recA | recombinase RecA | — | — |
| Escherichia coli ECRC102 | 0.76 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.80 | NIAGMN_18475 | recA | recombinase RecA | — | — |
| Escherichia coli ECRC98 | 0.76 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.80 | JDDGAC_24370 | recA | recombinase RecA | — | — |
| Escherichia coli ECOR38 | 0.76 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.80 | HEPCGN_19900 | recA | recombinase RecA | low | > 88 |
| Escherichia fergusonii Becca | 0.76 | EFB2_03326 | | UvrABC system protein B | 0.80 | EFB2_01225 | | Protein RecA | low | > 86 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.81 | EX28DRAFT_2785 | | protein RecA | — | — |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.80 | BWI76_RS22180 | | recombinase RecA | — | — |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.82 | DDA3937_RS16245 | | recombinase RecA | low | > 74 |
| Shewanella loihica PV-4 | 0.76 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.80 | Shew_1215 | recA | recombinase A (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_01408 | | UvrABC system protein B | 0.81 | MPMX20_03580 | | Protein RecA | low | > 85 |
| Dickeya dianthicola 67-19 | 0.75 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.82 | HGI48_RS16355 | | recombinase RecA | low | > 71 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.82 | DZA65_RS17450 | | recombinase RecA | — | — |
| Klebsiella pneumoniae MKP103 | 0.75 | KDGMDA_17050 | | excinuclease ABC subunit UvrB | 0.81 | KDGMDA_02850 | | recombinase RecA | low | > 95 |
| Erwinia amylovora T8 | 0.75 | OLJFJH_16735 | | excinuclease ABC subunit UvrB | 0.80 | OLJFJH_09575 | | recombinase RecA | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF675 | | Excinuclease ABC subunit B | 0.81 | GFF4693 | | RecA protein | — | — |
| Alteromonas macleodii MIT1002 | 0.75 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.77 | MIT1002_00955 | | Recombinase A | low | > 70 |
| Shewanella amazonensis SB2B | 0.74 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.80 | Sama_1046 | recA | recombinase A (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.74 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.81 | SO3430 | recA | recA protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.74 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.81 | Shewana3_1126 | recA | recombinase A (RefSeq) | low | > 73 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_02837 | | UvrABC system protein B | 0.73 | PFR28_00472 | | Protein RecA | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.73 | AO356_21335 | | excinuclease ABC subunit B | 0.73 | AO356_05670 | | recombinase RecA | 0.33 | 35 |
| Pseudomonas aeruginosa MRSN321 | 0.72 | DY961_RS01215 | uvrB;go_component=excinuclease | excinuclease ABC subunit UvrB | 0.73 | DY961_RS14895 | recA;go_component=cytoplasm|0005737||IEA;go_function=DNA | recombinase RecA | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.72 | IKLFDK_15985 | | excinuclease ABC subunit UvrB | 0.73 | IKLFDK_18465 | | recombinase RecA | 0.31 | 37 |
| Pseudomonas aeruginosa PUPa3 | 0.72 | DQ20_RS34340 | uvrB;go_component=excinuclease | excinuclease ABC subunit UvrB | 0.73 | DQ20_RS42235 | recA;go_component=cytoplasm|0005737||IEA;go_function=DNA | recombinase RecA | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.72 | Psyr_1974 | | Excinuclease ABC subunit B | 0.72 | Psyr_1378 | | RecA protein | 0.34 | 13 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.72 | Psyr_1974 | | Excinuclease ABC subunit B | 0.72 | Psyr_1378 | | RecA protein | 0.54 | 13 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.73 | Pf6N2E2_2993 | | RecA protein | — | — |
| Pseudomonas sp. DMC3 | 0.72 | GFF774 | | UvrABC system protein B | 0.73 | GFF2111 | | Protein RecA | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.72 | Psest_1296 | | excinuclease ABC, B subunit | 0.72 | Psest_2872 | | protein RecA | 0.33 | 19 |
| Pseudomonas orientalis W4I3 | 0.72 | QF045_RS20805 | | excinuclease ABC subunit UvrB | 0.72 | QF045_RS08730 | | recombinase RecA | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.72 | AO353_20545 | | excinuclease ABC subunit B | 0.73 | AO353_16805 | | recombinase RecA | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.72 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.73 | Pf1N1B4_3143 | | RecA protein | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.72 | COO64_RS05730 | uvrB | excinuclease ABC subunit UvrB | 0.73 | COO64_RS19930 | recA | recombinase RecA | low | > 93 |
| Pseudomonas simiae WCS417 | 0.72 | PS417_18685 | | excinuclease ABC subunit B | 0.72 | PS417_05815 | | recombinase RecA | 0.42 | 12 |
| Pseudomonas putida KT2440 | 0.72 | PP_1974 | | excinuclease UvrABC protein B | 0.72 | PP_1629 | | Protein RecA | — | — |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.72 | PFLU_RS05885 | | recombinase RecA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.72 | PFLU_RS05885 | | recombinase RecA | low | > 109 |
| Pseudomonas sp. BP01 | 0.72 | JOY50_RS16715 | uvrB | excinuclease ABC subunit UvrB | 0.72 | JOY50_RS23780 | recA | recombinase RecA | low | > 84 |
| Pseudomonas lactucae CFBP13502 | 0.72 | GEMAOFIL_03964 | | UvrABC system protein B | 0.73 | GEMAOFIL_01333 | | Protein RecA | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.73 | PfGW456L13_4668 | | RecA protein | low | > 87 |
| Pseudomonas segetis P6 | 0.71 | MPMX49_03091 | | UvrABC system protein B | 0.73 | MPMX49_03330 | | Protein RecA | low | > 75 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_04580 | | excinuclease ABC subunit B | 0.73 | OH686_18205 | | protein RecA | low | > 80 |
| Marinobacter adhaerens HP15 | 0.70 | HP15_1372 | | excinuclease ABC subunit B | 0.71 | HP15_1048 | | recombinase A | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.68 | ABZR86_RS00660 | | recombinase RecA | 0.68 | 27 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.71 | OKGIIK_03740 | recA | recombinase RecA | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.69 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.67 | Xcc-8004.3111.1 | | RecA protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.69 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.71 | LRK55_RS14695 | | recombinase RecA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.71 | LRK54_RS14980 | | recombinase RecA | low | > 59 |
| Rhodanobacter sp000427505 FW510-R12 | 0.69 | LRK53_RS14375 | | excinuclease ABC subunit UvrB | 0.71 | LRK53_RS13640 | | recombinase RecA | — | — |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.72 | B158DRAFT_1531 | | protein RecA | 0.60 | 14 |
| Acinetobacter baumannii LAC-4 | 0.67 | RR41_RS04945 | | excinuclease ABC subunit UvrB | 0.71 | RR41_RS08110 | | recombinase RecA | — | — |
| Lysobacter sp. OAE881 | 0.67 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.69 | ABIE51_RS07800 | | recombinase RecA | low | > 62 |
| Dechlorosoma suillum PS | 0.66 | Dsui_2434 | | excinuclease ABC, B subunit | 0.66 | Dsui_0707 | | protein RecA | 0.78 | 8 |
| Ralstonia sp. UNC404CL21Col | 0.66 | ABZR87_RS09940 | | excinuclease ABC subunit UvrB | 0.63 | ABZR87_RS07965 | | recombinase RecA | 0.70 | 12 |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_02142 | | UvrABC system protein B | 0.71 | MPMX26_01308 | | Protein RecA | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.66 | RPSI07_RS19240 | | excinuclease ABC subunit UvrB | 0.64 | RPSI07_RS21260 | | recombinase RecA | low | > 81 |
| Ralstonia solanacearum UW163 | 0.66 | UW163_RS11690 | | excinuclease ABC subunit UvrB | 0.63 | UW163_RS01625 | | recombinase RecA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.66 | RALBFv3_RS14225 | | excinuclease ABC subunit UvrB | 0.63 | RALBFv3_RS12010 | | recombinase RecA | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.65 | RS_RS05005 | | UvrABC system protein B | 0.63 | RS_RS02760 | | DNA recombination/repair protein RecA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS23870 | | excinuclease ABC subunit UvrB | 0.66 | QEN71_RS02335 | | recombinase RecA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS05995 | | excinuclease ABC subunit B | 0.63 | RR42_RS03080 | | recombinase RecA | 0.38 | 14 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.65 | H281DRAFT_04973 | | Excinuclease ABC subunit B | 0.66 | H281DRAFT_04208 | | RecA protein | 0.53 | 1 |
| Paraburkholderia graminis OAS925 | 0.65 | ABIE53_001645 | | excinuclease ABC subunit B | 0.66 | ABIE53_003448 | | recombination protein RecA | 0.81 | 2 |
| Burkholderia phytofirmans PsJN | 0.64 | BPHYT_RS06905 | | excinuclease ABC subunit B | 0.66 | BPHYT_RS16360 | | recombinase RecA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS15840 | | excinuclease ABC subunit B | 0.65 | HSERO_RS03270 | | protein RecA | 0.38 | 36 |
| Castellaniella sp019104865 MT123 | 0.64 | ABCV34_RS05110 | | excinuclease ABC subunit UvrB | 0.67 | ABCV34_RS04460 | | recombinase RecA | low | > 48 |
| Methylophilus sp. DMC18 | 0.63 | GFF1123 | | UvrABC system protein B | 0.67 | GFF841 | | Protein RecA | low | > 43 |
| Acidovorax sp. GW101-3H11 | 0.63 | Ac3H11_4114 | | Excinuclease ABC subunit B | 0.63 | Ac3H11_1255 | | RecA protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.63 | GFF4962 | | Excinuclease ABC subunit B | 0.62 | GFF2500 | | RecA protein | low | > 90 |
| Variovorax sp. OAS795 | 0.62 | ABID97_RS13995 | | excinuclease ABC subunit UvrB | 0.64 | ABID97_RS02275 | | recombinase RecA | low | > 91 |
| Variovorax sp. SCN45 | 0.62 | GFF945 | | Excinuclease ABC subunit B | 0.64 | GFF5390 | | RecA protein | low | > 127 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.66 | AZOBR_RS11095 | | recombinase RecA | 0.41 | 95 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.66 | MPMX19_00869 | | Protein RecA | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.60 | CCNA_01141 | | RecA protein | — | — |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.60 | CCNA_01141 | | RecA protein | 0.62 | 17 |
| Magnetospirillum magneticum AMB-1 | 0.59 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.65 | AMB_RS03205 | | DNA recombination/repair protein RecA | low | > 64 |
| Rhodospirillum rubrum S1H | 0.58 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.66 | Rru_A2819 | | RecA DNA recombination protein (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.60 | Dshi_1643 | | recA protein (RefSeq) | 0.65 | 13 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.66 | Ga0059261_0204 | | protein RecA | 0.57 | 9 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.58 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.64 | A4249_RS12615 | | recombinase RecA | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_c26160 | | uvrABC system protein B | 0.65 | PGA1_c15260 | | protein recA (recombinase A) | 0.57 | 9 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.57 | DVU1605 | uvrB | excinuclease ABC, B subunit (TIGR) | 0.55 | DVU1090 | recA | recA protein (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.57 | DvMF_0454 | | excinuclease ABC subunit B (RefSeq) | 0.55 | DvMF_0876 | recA | recombinase A (RefSeq) | 0.49 | 6 |
| Sphingobium sp. HT1-2 | 0.56 | GFF700 | | Excinuclease ABC subunit B | 0.67 | GFF3120 | | RecA protein | low | > 95 |
| Synechococcus elongatus PCC 7942 | 0.56 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.56 | Synpcc7942_0348 | recA | recombinase A | — | — |
| Parabacteroides merdae CL09T00C40 | 0.55 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.55 | HMPREF1078_RS00095 | | recombinase RecA | low | > 61 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.55 | CA265_RS19430 | | excinuclease ABC subunit B | 0.56 | CA265_RS00600 | | recombinase RecA | 0.69 | 13 |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.52 | HUW76_07355 | | recombinase RecA | low | > 35 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.54 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.57 | ABZR88_RS16740 | | recombinase RecA | 0.70 | 69 |
| Cellulophaga baltica 18 | 0.54 | M666_RS19015 | | excinuclease ABC subunit UvrB | 0.59 | M666_RS05260 | | recombinase RecA | low | > 67 |
| Synechocystis sp000284455 PCC 6803 | 0.54 | SGL_RS14040 | | excinuclease ABC subunit UvrB | 0.59 | SGL_RS18280 | | recombinase RecA | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.54 | Echvi_1215 | | excinuclease ABC, B subunit | 0.56 | Echvi_0044 | | protein RecA | 0.52 | 22 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.53 | CA264_19110 | | excinuclease ABC subunit B | 0.60 | CA264_19695 | | DNA recombination/repair protein RecA | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.55 | BT4610 | | RecA (NCBI ptt file) | 0.53 | 47 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.56 | HMPREF1058_RS15965 | | recombinase RecA | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.57 | ABI39_RS11930 | | recombinase RecA | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.52 | BACOVA_03714 | | excinuclease ABC, B subunit | 0.55 | BACOVA_05402 | | RecA protein | low | > 96 |
| Bacteroides stercoris CC31F | 0.51 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.55 | HMPREF1181_RS11910 | | recombinase RecA | low | > 56 |
| Bifidobacterium breve UCC2003 | 0.51 | BBR_RS14285 | | excinuclease ABC subunit UvrB | 0.61 | BBR_RS16530 | | recombinase RecA | 0.65 | 8 |
Not shown: 3 genomes with orthologs for CSW01_05185 only; 6 genomes with orthologs for CSW01_02875 only