| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07735 | | multidrug resistance protein NorM | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.76 | 2 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS09220 | | MATE family efflux transporter | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_01973 | | Multidrug resistance protein MdtK | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_11210 | | MATE family efflux transporter | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_02061 | | Multidrug resistance protein MdtK | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 73 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS09270 | | multidrug efflux MATE transporter MdtK | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS16535 | | MATE family efflux transporter | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Escherichia fergusonii Becca | 0.54 | EFB2_02329 | | Multidrug resistance protein MdtK | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli BL21 | 0.54 | ECD_01634 | | multidrug efflux system transporter | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Escherichia coli BW25113 | 0.54 | b1663 | mdtK | multidrug efflux protein NorM (NCBI) | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_01950 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_00750 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC100 | 0.54 | OKFHMN_27360 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_18050 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_00705 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_05745 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Rahnella sp. WP5 | 0.54 | EX31_RS13855 | | MATE family efflux transporter | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_16670 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_17880 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_1660 | | putative efflux protein, MATE family | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS12700 | | MATE family efflux transporter | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF3613 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.85 | 1 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS13155 | | MATE family efflux transporter | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Erwinia amylovora T8 | 0.53 | OLJFJH_14535 | | Multidrug resistance protein MdtK | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | low | > 58 |
| Pantoea sp. MT58 | 0.52 | IAI47_10820 | | MATE family efflux transporter | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS11170 | | MATE family efflux transporter | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Shewanella amazonensis SB2B | 0.48 | Sama_1761 | | MATE efflux family protein (RefSeq) | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2039 | | MATE efflux family protein (RefSeq) | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.47 | Shew_2037 | | MATE efflux family protein (RefSeq) | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.47 | SO2295 | | MATE efflux family protein (NCBI ptt file) | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_02233 | | Na(+)/drug antiporter | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_3892 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas sp. DMC3 | 0.42 | GFF1263 | | Multidrug resistance protein NorM | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | low | > 89 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_07530 | | multidrug transporter | 0.50 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS07610 | | MATE family efflux transporter | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS07610 | | MATE family efflux transporter | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_02075 | | Na(+)/drug antiporter, MATE family of MDR efflux pumps | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_02370 | | MATE family efflux transporter | 0.51 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_00550 | | MATE family efflux transporter | 0.47 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_4049 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_2298 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.20 | 88 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_01102 | | Multidrug resistance protein NorM | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.40 | COO64_RS05190 | | MATE family efflux transporter | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 93 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_2549 | | putative efflux protein, MATE family | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.39 | IKLFDK_06480 | | proton-coupled multidrug efflux MATE transporter PmpM | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | low | > 101 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3913 | | multidrug resistance protein NorM | 0.42 | HP15_288 | | alanine racemase domain protein | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00306 | | Multidrug resistance protein NorM | 0.47 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS12525 | | MATE family efflux transporter | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.31 | LRK53_RS03980 | | MATE family efflux transporter | 0.27 | LRK53_RS07085 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 60 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS10790 | | MATE family efflux transporter | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS11085 | | MATE family efflux transporter | 0.27 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_12790 | norM | MATE family efflux transporter | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Kangiella aquimarina DSM 16071 | 0.25 | B158DRAFT_2495 | | putative efflux protein, MATE family | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | low | > 40 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.25 | CA264_06370 | | MATE family efflux transporter | 0.26 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.24 | Xcc-8004.4760.1 | | Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM | 0.39 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.41 | 35 |
| Paraburkholderia graminis OAS925 | 0.24 | ABIE53_002038 | | MATE family multidrug resistance protein | 0.50 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.23 | BPHYT_RS09015 | | multidrug transporter MatE | 0.51 | BPHYT_RS03495 | | hypothetical protein | low | > 109 |
| Cellulophaga baltica 18 | 0.23 | M666_RS10435 | | MATE family efflux transporter | 0.29 | M666_RS17595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 67 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.23 | H281DRAFT_00822 | | multidrug resistance protein, MATE family | 0.49 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.23 | Echvi_2195 | | putative efflux protein, MATE family | 0.26 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.23 | RR42_RS13335 | | multidrug transporter MatE | 0.50 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS15100 | | MATE family efflux transporter | 0.44 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS12570 | | MATE family efflux transporter | 0.44 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum GMI1000 | 0.22 | RS_RS05915 | | MATE family efflux transporter | 0.45 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS18275 | | MATE family efflux transporter | 0.44 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Lysobacter sp. OAE881 | 0.22 | ABIE51_RS02170 | | MATE family efflux transporter | 0.40 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.21 | ABZR87_RS10730 | | MATE family efflux transporter | 0.46 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS09325 | | MATE family efflux transporter | 0.29 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | low | > 88 |
| Paraburkholderia sabiae LMG 24235 | 0.21 | QEN71_RS22335 | | MATE family efflux transporter | 0.49 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 153 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.21 | ABZR88_RS09785 | | MATE family efflux transporter | 0.27 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Synechocystis sp000284455 PCC 6803 | 0.20 | SGL_RS14765 | | MATE family efflux transporter | 0.25 | SGL_RS16960 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 51 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT3804 | | putative transport protein, multidrug efflux protein (NCBI ptt file) | 0.27 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | low | > 81 |
| Phocaeicola vulgatus CL09T03C04 | 0.20 | HMPREF1058_RS02770 | | MATE family efflux transporter | 0.26 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.20 | ABI39_RS02110 | | MATE family efflux transporter | 0.26 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 72 |
| Dechlorosoma suillum PS | 0.19 | Dsui_1442 | | putative efflux protein, MATE family | 0.53 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Agrobacterium fabrum C58 | 0.19 | Atu2172 | | multidrug efflux protein | 0.31 | Atu2747 | | hypothetical protein | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.19 | HSERO_RS04300 | | multidrug transporter MatE | 0.53 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
| Bacteroides stercoris CC31F | 0.19 | HMPREF1181_RS00200 | | MATE family efflux transporter | 0.24 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 56 |
| Pseudomonas sp. BP01 | 0.19 | JOY50_RS09165 | | NorM family multidrug efflux MATE transporter | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 84 |
| Rhodospirillum rubrum S1H | 0.19 | Rru_A0697 | | Multi antimicrobial extrusion protein MatE (NCBI) | 0.30 | Rru_A1141 | | Protein of unknown function UPF0001 (NCBI) | low | > 58 |
| Sinorhizobium meliloti 1021 | 0.19 | SMc01211 | | hypothetical protein | 0.28 | SMc02812 | | hypothetical protein | low | > 103 |
| Synechococcus elongatus PCC 7942 | 0.19 | Synpcc7942_1699 | | MATE efflux family protein | 0.25 | Synpcc7942_2060 | ylmE | hypothetical protein | low | > 38 |
| Parabacteroides merdae CL09T00C40 | 0.19 | HMPREF1078_RS10360 | | MATE family efflux transporter | 0.27 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 61 |
| Rhodopseudomonas palustris CGA009 | 0.19 | TX73_004890 | | MATE family efflux transporter | 0.31 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Variovorax sp. OAS795 | 0.19 | ABID97_RS14630 | | MATE family efflux transporter | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Bosea sp. OAE506 | 0.18 | ABIE41_RS08515 | | MATE family efflux transporter | 0.29 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 77 |
| Pseudomonas putida KT2440 | 0.18 | PP_5262 | | Probable multidrug resistance protein NorM | 0.49 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.18 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.18 | Psyr_0073 | | Multi antimicrobial extrusion protein MatE | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Rhizobium sp. OAE497 | 0.18 | ABIE40_RS12780 | | MATE family efflux transporter | 0.29 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Acidovorax sp. GW101-3H11 | 0.17 | Ac3H11_463 | | Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog | 0.50 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Phaeobacter inhibens DSM 17395 | 0.17 | PGA1_c21310 | | multidrug resistance protein NorM | 0.27 | PGA1_c33360 | | putative alanine racemase | low | > 62 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_03650 | | MATE efflux family protein | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | low | > 94 |
| Dinoroseobacter shibae DFL-12 | 0.17 | Dshi_0755 | | MATE efflux family protein (RefSeq) | 0.29 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | low | > 64 |
| Variovorax sp. SCN45 | 0.17 | GFF1099 | | Na+-driven multidrug efflux pump | 0.50 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Castellaniella sp019104865 MT123 | 0.14 | ABCV34_RS00895 | | MATE family efflux transporter | 0.29 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.14 | A4249_RS03825 | | MATE family efflux transporter | 0.28 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Azospirillum brasilense Sp245 | 0.14 | AZOBR_RS15325 | | multidrug transporter | 0.32 | AZOBR_RS01870 | | alanine racemase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.13 | CCNA_02099 | | Na+ driven multidrug efflux pump | 0.26 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 67 |
| Caulobacter crescentus NA1000 | 0.13 | CCNA_02099 | | Na+ driven multidrug efflux pump | 0.26 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 66 |
| Azospirillum sp. SherDot2 | 0.12 | MPMX19_01223 | | Multidrug resistance protein NorM | 0.30 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | low | > 112 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.09 | DVU1217 | | MATE efflux family protein (TIGR) | 0.30 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | low | > 55 |
| Sphingomonas koreensis DSMZ 15582 | 0.09 | Ga0059261_2291 | | putative efflux protein, MATE family | 0.22 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | low | > 68 |
Not shown: 0 genomes with orthologs for CSW01_07735 only; 9 genomes with orthologs for CSW01_02455 only