Conservation of cofitness between CSW01_07735 and CSW01_02455 in Vibrio cholerae E7946 ATCC 55056

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07735 multidrug resistance protein NorM 1.0 CSW01_02455 YggS family pyridoxal phosphate enzyme 0.76 2
Pectobacterium carotovorum WPP14 0.55 HER17_RS09220 MATE family efflux transporter 0.61 HER17_RS03810 YggS family pyridoxal phosphate-dependent enzyme low > 75
Enterobacter sp. TBS_079 0.55 MPMX20_01973 Multidrug resistance protein MdtK 0.56 MPMX20_03809 Pyridoxal phosphate homeostasis protein low > 85
Serratia liquefaciens MT49 0.54 IAI46_11210 MATE family efflux transporter 0.56 IAI46_21410 YggS family pyridoxal phosphate-dependent enzyme low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02061 Multidrug resistance protein MdtK 0.58 OHPLBJKB_00765 Pyridoxal phosphate homeostasis protein low > 73
Escherichia coli Nissle 1917 0.54 ECOLIN_RS09270 multidrug efflux MATE transporter MdtK 0.58 ECOLIN_RS16415 pyridoxal phosphate homeostasis protein
Klebsiella michiganensis M5al 0.54 BWI76_RS16535 MATE family efflux transporter 0.60 BWI76_RS24100 YggS family pyridoxal phosphate enzyme low > 92
Escherichia fergusonii Becca 0.54 EFB2_02329 Multidrug resistance protein MdtK 0.58 EFB2_00951 Pyridoxal phosphate homeostasis protein low > 86
Escherichia coli BL21 0.54 ECD_01634 multidrug efflux system transporter 0.58 ECD_02781 UPF0001 family protein, PLP-binding low > 61
Escherichia coli BW25113 0.54 b1663 mdtK multidrug efflux protein NorM (NCBI) 0.58 b2951 yggS predicted enzyme (NCBI) low > 76
Escherichia coli ECRC98 0.54 JDDGAC_01950 mdtK multidrug efflux MATE transporter MdtK 0.58 JDDGAC_22885 yggS pyridoxal phosphate homeostasis protein low > 86
Escherichia coli ECRC99 0.54 KEDOAH_00750 mdtK multidrug efflux MATE transporter MdtK 0.58 KEDOAH_08885 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECRC100 0.54 OKFHMN_27360 mdtK multidrug efflux MATE transporter MdtK 0.58 OKFHMN_19255 yggS pyridoxal phosphate homeostasis protein low > 80
Escherichia coli ECRC101 0.54 MCAODC_18050 mdtK multidrug efflux MATE transporter MdtK 0.58 MCAODC_09775 yggS pyridoxal phosphate homeostasis protein low > 87
Escherichia coli ECRC102 0.54 NIAGMN_00705 mdtK multidrug efflux MATE transporter MdtK 0.58 NIAGMN_17020 yggS pyridoxal phosphate homeostasis protein
Escherichia coli ECOR38 0.54 HEPCGN_05745 mdtK multidrug efflux MATE transporter MdtK 0.58 HEPCGN_18560 yggS pyridoxal phosphate homeostasis protein low > 87
Rahnella sp. WP5 0.54 EX31_RS13855 MATE family efflux transporter 0.57 EX31_RS02685 YggS family pyridoxal phosphate-dependent enzyme low > 89
Escherichia coli ECRC62 0.54 BNILDI_16670 mdtK multidrug efflux MATE transporter MdtK 0.58 BNILDI_09705 yggS pyridoxal phosphate homeostasis protein low > 75
Escherichia coli ECOR27 0.54 NOLOHH_17880 mdtK multidrug efflux MATE transporter MdtK 0.58 NOLOHH_11125 yggS pyridoxal phosphate homeostasis protein low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1660 putative efflux protein, MATE family 0.59 EX28DRAFT_2989 pyridoxal phosphate enzyme, YggS family low > 76
Dickeya dianthicola 67-19 0.53 HGI48_RS12700 MATE family efflux transporter 0.61 HGI48_RS17345 YggS family pyridoxal phosphate-dependent enzyme low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF3613 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps 0.58 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.85 1
Dickeya dianthicola ME23 0.53 DZA65_RS13155 MATE family efflux transporter 0.61 DZA65_RS18435 YggS family pyridoxal phosphate-dependent enzyme low > 75
Erwinia amylovora T8 0.53 OLJFJH_14535 Multidrug resistance protein MdtK 0.55 OLJFJH_08530 YggS family pyridoxal phosphate enzyme low > 58
Pantoea sp. MT58 0.52 IAI47_10820 MATE family efflux transporter 0.58 IAI47_03595 YggS family pyridoxal phosphate-dependent enzyme low > 76
Erwinia tracheiphila SCR3 0.50 LU632_RS11170 MATE family efflux transporter 0.55 LU632_RS05460 YggS family pyridoxal phosphate-dependent enzyme low > 74
Shewanella amazonensis SB2B 0.48 Sama_1761 MATE efflux family protein (RefSeq) 0.48 Sama_2477 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.47 Shewana3_2039 MATE efflux family protein (RefSeq) 0.56 Shewana3_1194 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.47 Shew_2037 MATE efflux family protein (RefSeq) 0.55 Shew_1137 alanine racemase domain-containing protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.47 SO2295 MATE efflux family protein (NCBI ptt file) 0.56 SO3352 conserved hypothetical protein TIGR00044 (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_02233 Na(+)/drug antiporter 0.49 MIT1002_03061 pyridoxal phosphate enzyme, YggS family low > 70
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_3892 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps 0.51 Pf1N1B4_2342 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC
Pseudomonas sp. DMC3 0.42 GFF1263 Multidrug resistance protein NorM 0.52 GFF209 Pyridoxal phosphate homeostasis protein low > 89
Pseudomonas simiae WCS417 0.42 PS417_07530 multidrug transporter 0.50 PS417_26725 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS07610 MATE family efflux transporter 0.49 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS07610 MATE family efflux transporter 0.49 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme low > 109
Pseudomonas sp. S08-1 0.41 OH686_02075 Na(+)/drug antiporter, MATE family of MDR efflux pumps 0.50 OH686_10975 Pyridoxal phosphate-containing protein YggS low > 80
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_02370 MATE family efflux transporter 0.51 AO356_13425 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_00550 MATE family efflux transporter 0.47 AO353_08160 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_4049 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps 0.52 PfGW456L13_1011 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 87
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2298 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps 0.49 Pf6N2E2_4601 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.20 88
Pseudomonas sp. RS175 0.40 PFR28_01102 Multidrug resistance protein NorM 0.49 PFR28_04242 Pyridoxal phosphate homeostasis protein low > 88
Pseudomonas sp. SVBP6 0.40 COO64_RS05190 MATE family efflux transporter 0.47 COO64_RS13000 YggS family pyridoxal phosphate-dependent enzyme low > 93
Pseudomonas stutzeri RCH2 0.39 Psest_2549 putative efflux protein, MATE family 0.49 Psest_0284 pyridoxal phosphate enzyme, YggS family low > 67
Pseudomonas aeruginosa PA14 0.39 IKLFDK_06480 proton-coupled multidrug efflux MATE transporter PmpM 0.47 IKLFDK_23450 Pyridoxal phosphate homeostasis protein low > 101
Marinobacter adhaerens HP15 0.34 HP15_3913 multidrug resistance protein NorM 0.42 HP15_288 alanine racemase domain protein low > 73
Acinetobacter radioresistens SK82 0.32 MPMX26_00306 Multidrug resistance protein NorM 0.47 MPMX26_02404 Pyridoxal phosphate homeostasis protein low > 36
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS12525 MATE family efflux transporter 0.27 ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS03980 MATE family efflux transporter 0.27 LRK53_RS07085 YggS family pyridoxal phosphate-dependent enzyme low > 60
Rhodanobacter denitrificans MT42 0.30 LRK55_RS10790 MATE family efflux transporter 0.27 LRK55_RS02655 YggS family pyridoxal phosphate-dependent enzyme low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS11085 MATE family efflux transporter 0.27 LRK54_RS02905 YggS family pyridoxal phosphate-dependent enzyme low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_12790 norM MATE family efflux transporter 0.25 OKGIIK_09885 Pyridoxal phosphate homeostasis protein low > 52
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2495 putative efflux protein, MATE family 0.44 B158DRAFT_0196 pyridoxal phosphate enzyme, YggS family low > 40
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_06370 MATE family efflux transporter 0.26 CA264_06410 YggS family pyridoxal phosphate enzyme low > 74
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4760.1 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM 0.39 Xcc-8004.1711.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.41 35
Paraburkholderia graminis OAS925 0.24 ABIE53_002038 MATE family multidrug resistance protein 0.50 ABIE53_000841 pyridoxal phosphate enzyme (YggS family) low > 113
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS09015 multidrug transporter MatE 0.51 BPHYT_RS03495 hypothetical protein low > 109
Cellulophaga baltica 18 0.23 M666_RS10435 MATE family efflux transporter 0.29 M666_RS17595 YggS family pyridoxal phosphate-dependent enzyme low > 67
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_00822 multidrug resistance protein, MATE family 0.49 H281DRAFT_04680 hypothetical protein low > 103
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2195 putative efflux protein, MATE family 0.26 Echvi_2233 pyridoxal phosphate enzyme, YggS family low > 79
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS13335 multidrug transporter MatE 0.50 RR42_RS17355 hypothetical protein low > 128
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS15100 MATE family efflux transporter 0.44 RALBFv3_RS05575 YggS family pyridoxal phosphate-dependent enzyme low > 76
Ralstonia solanacearum UW163 0.22 UW163_RS12570 MATE family efflux transporter 0.44 UW163_RS08050 YggS family pyridoxal phosphate-dependent enzyme
Ralstonia solanacearum GMI1000 0.22 RS_RS05915 MATE family efflux transporter 0.45 RS_RS13435 YggS family pyridoxal phosphate-dependent enzyme low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS18275 MATE family efflux transporter 0.44 RPSI07_RS11725 YggS family pyridoxal phosphate-dependent enzyme low > 81
Lysobacter sp. OAE881 0.22 ABIE51_RS02170 MATE family efflux transporter 0.40 ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme low > 62
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS10730 MATE family efflux transporter 0.46 ABZR87_RS01225 YggS family pyridoxal phosphate-dependent enzyme low > 80
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS09325 MATE family efflux transporter 0.29 CA265_RS06285 YggS family pyridoxal phosphate enzyme low > 88
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS22335 MATE family efflux transporter 0.49 QEN71_RS26595 YggS family pyridoxal phosphate-dependent enzyme low > 153
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS09785 MATE family efflux transporter 0.27 ABZR88_RS11740 YggS family pyridoxal phosphate-dependent enzyme low > 71
Synechocystis sp000284455 PCC 6803 0.20 SGL_RS14765 MATE family efflux transporter 0.25 SGL_RS16960 YggS family pyridoxal phosphate-dependent enzyme low > 51
Bacteroides thetaiotaomicron VPI-5482 0.20 BT3804 putative transport protein, multidrug efflux protein (NCBI ptt file) 0.27 BT1332 conserved hypothetical protein (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS02770 MATE family efflux transporter 0.26 HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme low > 67
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS02110 MATE family efflux transporter 0.26 ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme low > 72
Dechlorosoma suillum PS 0.19 Dsui_1442 putative efflux protein, MATE family 0.53 Dsui_0603 pyridoxal phosphate enzyme, YggS family low > 51
Agrobacterium fabrum C58 0.19 Atu2172 multidrug efflux protein 0.31 Atu2747 hypothetical protein low > 89
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS04300 multidrug transporter MatE 0.53 HSERO_RS18995 hypothetical protein low > 78
Bacteroides stercoris CC31F 0.19 HMPREF1181_RS00200 MATE family efflux transporter 0.24 HMPREF1181_RS10865 YggS family pyridoxal phosphate-dependent enzyme low > 56
Pseudomonas sp. BP01 0.19 JOY50_RS09165 NorM family multidrug efflux MATE transporter 0.50 JOY50_RS20910 YggS family pyridoxal phosphate-dependent enzyme low > 84
Rhodospirillum rubrum S1H 0.19 Rru_A0697 Multi antimicrobial extrusion protein MatE (NCBI) 0.30 Rru_A1141 Protein of unknown function UPF0001 (NCBI) low > 58
Sinorhizobium meliloti 1021 0.19 SMc01211 hypothetical protein 0.28 SMc02812 hypothetical protein low > 103
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_1699 MATE efflux family protein 0.25 Synpcc7942_2060 ylmE hypothetical protein low > 38
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS10360 MATE family efflux transporter 0.27 HMPREF1078_RS15965 YggS family pyridoxal phosphate-dependent enzyme low > 61
Rhodopseudomonas palustris CGA009 0.19 TX73_004890 MATE family efflux transporter 0.31 TX73_014475 YggS family pyridoxal phosphate-dependent enzyme low > 86
Variovorax sp. OAS795 0.19 ABID97_RS14630 MATE family efflux transporter 0.50 ABID97_RS00250 YggS family pyridoxal phosphate-dependent enzyme
Bosea sp. OAE506 0.18 ABIE41_RS08515 MATE family efflux transporter 0.29 ABIE41_RS04720 YggS family pyridoxal phosphate-dependent enzyme low > 77
Pseudomonas putida KT2440 0.18 PP_5262 Probable multidrug resistance protein NorM 0.49 PP_5094 putative enzyme with PLP binding domain low > 96
Pseudomonas syringae pv. syringae B728a 0.18 Psyr_0073 Multi antimicrobial extrusion protein MatE 0.49 Psyr_0477 Protein of unknown function UPF0001 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.18 Psyr_0073 Multi antimicrobial extrusion protein MatE 0.49 Psyr_0477 Protein of unknown function UPF0001 low > 86
Rhizobium sp. OAE497 0.18 ABIE40_RS12780 MATE family efflux transporter 0.29 ABIE40_RS19180 YggS family pyridoxal phosphate-dependent enzyme
Acidovorax sp. GW101-3H11 0.17 Ac3H11_463 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog 0.50 Ac3H11_4474 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC low > 79
Phaeobacter inhibens DSM 17395 0.17 PGA1_c21310 multidrug resistance protein NorM 0.27 PGA1_c33360 putative alanine racemase low > 62
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03650 MATE efflux family protein 0.24 BACOVA_00593 pyridoxal phosphate enzyme, YggS family low > 94
Dinoroseobacter shibae DFL-12 0.17 Dshi_0755 MATE efflux family protein (RefSeq) 0.29 Dshi_0042 alanine racemase domain protein (RefSeq) low > 64
Variovorax sp. SCN45 0.17 GFF1099 Na+-driven multidrug efflux pump 0.50 GFF3744 Pyridoxal phosphate-containing protein YggS
Castellaniella sp019104865 MT123 0.14 ABCV34_RS00895 MATE family efflux transporter 0.29 ABCV34_RS02955 YggS family pyridoxal phosphate-dependent enzyme low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS03825 MATE family efflux transporter 0.28 A4249_RS13760 YggS family pyridoxal phosphate-dependent enzyme low > 48
Azospirillum brasilense Sp245 0.14 AZOBR_RS15325 multidrug transporter 0.32 AZOBR_RS01870 alanine racemase
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_02099 Na+ driven multidrug efflux pump 0.26 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III low > 67
Caulobacter crescentus NA1000 0.13 CCNA_02099 Na+ driven multidrug efflux pump 0.26 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III low > 66
Azospirillum sp. SherDot2 0.12 MPMX19_01223 Multidrug resistance protein NorM 0.30 MPMX19_00050 Pyridoxal phosphate homeostasis protein low > 112
Desulfovibrio vulgaris Hildenborough JW710 0.09 DVU1217 MATE efflux family protein (TIGR) 0.30 DVU0051 conserved hypothetical protein TIGR00044 (TIGR) low > 55
Sphingomonas koreensis DSMZ 15582 0.09 Ga0059261_2291 putative efflux protein, MATE family 0.22 Ga0059261_2216 pyridoxal phosphate enzyme, YggS family low > 68

Not shown: 0 genomes with orthologs for CSW01_07735 only; 9 genomes with orthologs for CSW01_02455 only