| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07735 | | multidrug resistance protein NorM | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.76 | 2 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS09220 | | MATE family efflux transporter | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_01973 | | Multidrug resistance protein MdtK | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_11210 | | MATE family efflux transporter | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 87 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS09270 | | multidrug efflux MATE transporter MdtK | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS16535 | | MATE family efflux transporter | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_02061 | | Multidrug resistance protein MdtK | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 74 |
| Escherichia fergusonii Becca | 0.54 | EFB2_02329 | | Multidrug resistance protein MdtK | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli BL21 | 0.54 | ECD_01634 | | multidrug efflux system transporter | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Escherichia coli BW25113 | 0.54 | b1663 | mdtK | multidrug efflux protein NorM (NCBI) | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_00750 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC100 | 0.54 | OKFHMN_27360 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 79 |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_01950 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_18050 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_00705 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.62 | 48 |
| Rahnella sp. WP5 | 0.54 | EX31_RS13855 | | MATE family efflux transporter | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_05745 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 88 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_17880 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_16670 | mdtK | multidrug efflux MATE transporter MdtK | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Klebsiella pneumoniae MKP103 | 0.54 | KDGMDA_23495 | | MdtK family multidrug efflux MATE transporter | 0.55 | KDGMDA_04615 | | YggS family pyridoxal phosphate enzyme | low | > 94 |
| Klebsiella pneumoniae MRSN742743 | 0.54 | KFA93_RS13835 | mdtK;inference=COORDINATES | MdtK family multidrug efflux MATE transporter | 0.55 | KFA93_RS12160 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 82 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_1660 | | putative efflux protein, MATE family | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF3613 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.85 | 1 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS12700 | | MATE family efflux transporter | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS13155 | | MATE family efflux transporter | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Erwinia amylovora T8 | 0.53 | OLJFJH_14535 | | Multidrug resistance protein MdtK | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | low | > 58 |
| Pantoea sp. MT58 | 0.52 | IAI47_10820 | | MATE family efflux transporter | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.52 | PagCFBP13516_RS10990 | | MATE family efflux transporter | 0.58 | PagCFBP13516_RS03830 | | YggS family pyridoxal phosphate-dependent enzyme | 0.66 | 33 |
| Erwinia tracheiphila HP pepo 2.2 | 0.50 | IJEDHG_25190 | | MATE family efflux transporter | 0.55 | IJEDHG_03450 | | YggS family pyridoxal phosphate enzyme | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS11170 | | MATE family efflux transporter | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 73 |
| Shewanella amazonensis SB2B | 0.48 | Sama_1761 | | MATE efflux family protein (RefSeq) | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_2039 | | MATE efflux family protein (RefSeq) | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.47 | Shew_2037 | | MATE efflux family protein (RefSeq) | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.47 | SO2295 | | MATE efflux family protein (NCBI ptt file) | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Pseudomonas segetis P6 | 0.44 | ACVTMO_RS11575 | | MATE family efflux transporter | 0.50 | ACVTMO_RS03020 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_02233 | | Na(+)/drug antiporter | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_3892 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas sp. DMC3 | 0.42 | GFF1263 | | Multidrug resistance protein NorM | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | low | > 89 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_07530 | | multidrug transporter | 0.50 | PS417_26725 | | hypothetical protein | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.42 | GEMAOFIL_01638 | | Multidrug resistance protein NorM | 0.50 | GEMAOFIL_05482 | | Pyridoxal phosphate homeostasis protein | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS07610 | | MATE family efflux transporter | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS07610 | | MATE family efflux transporter | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas protegens RBAN4 | 0.41 | FABNJH_10115 | pmpM | Multidrug resistance protein PmpM | 0.48 | FABNJH_29425 | | Pyridoxal phosphate homeostasis protein | — | — |
| Pseudomonas sp. S08-1 | 0.41 | OH686_02075 | | Na(+)/drug antiporter, MATE family of MDR efflux pumps | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_02370 | | MATE family efflux transporter | 0.51 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas orientalis W4I3 | 0.41 | QF045_RS10175 | | MATE family efflux transporter | 0.50 | QF045_RS01125 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_00550 | | MATE family efflux transporter | 0.47 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_4049 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_2298 | | Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.20 | 88 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_01102 | | Multidrug resistance protein NorM | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.40 | COO64_RS05190 | | MATE family efflux transporter | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 91 |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_2549 | | putative efflux protein, MATE family | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Pseudomonas aeruginosa PUPa3 | 0.39 | DQ20_RS53280 | pmpM;inference=COORDINATES | proton-coupled multidrug efflux MATE transporter PmpM | 0.48 | DQ20_RS37350 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.39 | DY961_RS19155 | pmpM;inference=COORDINATES | proton-coupled multidrug efflux MATE transporter PmpM | 0.48 | DY961_RS21950 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 99 |
| Pseudomonas aeruginosa PA14 | 0.39 | IKLFDK_06480 | | proton-coupled multidrug efflux MATE transporter PmpM | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | low | > 98 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3913 | | multidrug resistance protein NorM | 0.42 | HP15_288 | | alanine racemase domain protein | low | > 73 |
| Acinetobacter baumannii LAC-4 | 0.34 | RR41_RS17025 | | multidrug efflux MATE transporter AbeM | 0.43 | RR41_RS14795 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_00306 | | Multidrug resistance protein NorM | 0.47 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Rhodanobacter sp000427505 FW510-R12 | 0.31 | LRK53_RS03980 | | MATE family efflux transporter | 0.27 | LRK53_RS07085 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS12525 | | MATE family efflux transporter | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS11085 | | MATE family efflux transporter | 0.27 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS10790 | | MATE family efflux transporter | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Kangiella aquimarina DSM 16071 | 0.25 | B158DRAFT_2495 | | putative efflux protein, MATE family | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | low | > 40 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.25 | CA264_06370 | | MATE family efflux transporter | 0.26 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | low | > 74 |
Not shown: 1 genomes with orthologs for CSW01_07735 only; 54 genomes with orthologs for CSW01_02455 only