| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS17380 | | ribulose-phosphate 3-epimerase | 1.0 | BPHYT_RS33875 | | tryptophan synthase subunit alpha | 0.74 | 4 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.97 | H281DRAFT_05717 | | ribulose-5-phosphate 3-epimerase | 0.97 | H281DRAFT_06067 | | tryptophan synthase, beta chain | 0.54 | 9 |
| Paraburkholderia graminis OAS925 | 0.96 | ABIE53_003638 | | ribulose-phosphate 3-epimerase | 0.97 | ABIE53_004809 | | tryptophan synthase beta chain | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.91 | QEN71_RS27540 | | ribulose-phosphate 3-epimerase | 0.96 | QEN71_RS17645 | | tryptophan synthase subunit beta | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.80 | RR42_RS18285 | | ribulose-phosphate 3-epimerase | 0.90 | RR42_RS14360 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.77 | RALBFv3_RS06475 | | ribulose-phosphate 3-epimerase | 0.88 | RALBFv3_RS02585 | | tryptophan synthase subunit beta | — | — |
| Ralstonia solanacearum UW163 | 0.77 | UW163_RS07150 | | ribulose-phosphate 3-epimerase | 0.88 | UW163_RS11140 | | tryptophan synthase subunit beta | — | — |
| Herbaspirillum seropedicae SmR1 | 0.77 | HSERO_RS19425 | | ribulose-phosphate 3-epimerase | 0.79 | HSERO_RS16475 | | tryptophan synthase subunit alpha | — | — |
| Ralstonia solanacearum GMI1000 | 0.77 | RS_RS14420 | | ribulose-phosphate 3-epimerase | 0.88 | RS_RS09965 | | tryptophan synthase subunit beta | — | — |
| Ralstonia solanacearum PSI07 | 0.77 | RPSI07_RS10765 | | ribulose-phosphate 3-epimerase | 0.88 | RPSI07_RS14730 | | tryptophan synthase subunit beta | — | — |
| Ralstonia sp. UNC404CL21Col | 0.77 | ABZR87_RS02130 | | ribulose-phosphate 3-epimerase | 0.88 | ABZR87_RS14500 | | tryptophan synthase subunit beta | — | — |
| Dechlorosoma suillum PS | 0.75 | Dsui_0221 | | ribulose-phosphate 3-epimerase | 0.85 | Dsui_3192 | | tryptophan synthase, beta subunit | — | — |
| Klebsiella michiganensis M5al | 0.74 | BWI76_RS26070 | | ribulose-phosphate 3-epimerase | 0.54 | BWI76_RS11845 | | tryptophan synthase subunit beta | — | — |
| Serratia liquefaciens MT49 | 0.74 | IAI46_23685 | | ribulose-phosphate 3-epimerase | 0.53 | IAI46_14040 | | tryptophan synthase subunit beta | low | > 86 |
| Dickeya dianthicola ME23 | 0.73 | DZA65_RS20745 | | ribulose-phosphate 3-epimerase | 0.53 | DZA65_RS10945 | | tryptophan synthase subunit beta | — | — |
| Dickeya dianthicola 67-19 | 0.73 | HGI48_RS19660 | | ribulose-phosphate 3-epimerase | 0.53 | HGI48_RS10465 | | tryptophan synthase subunit beta | — | — |
| Enterobacter asburiae PDN3 | 0.73 | EX28DRAFT_4156 | | ribulose-phosphate 3-epimerase | 0.54 | EX28DRAFT_0933 | | tryptophan synthase, beta subunit | low | > 76 |
| Escherichia coli BL21 | 0.73 | ECD_03238 | | D-ribulose-5-phosphate 3-epimerase | 0.53 | ECD_01235 | | tryptophan synthase, beta subunit | low | > 61 |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_15950 | rpe | ribulose-phosphate 3-epimerase | 0.53 | HEPCGN_25520 | trpB | tryptophan synthase subunit beta | low | > 87 |
| Dickeya dadantii 3937 | 0.73 | DDA3937_RS19530 | | ribulose-phosphate 3-epimerase | 0.53 | DDA3937_RS10465 | | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC101 | 0.73 | MCAODC_07660 | dam | adenine-specific DNA-methyltransferase | 0.53 | MCAODC_15595 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_14900 | dam | adenine-specific DNA-methyltransferase | 0.53 | NIAGMN_26840 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_20760 | dam | adenine-specific DNA-methyltransferase | 0.53 | JDDGAC_05215 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia fergusonii Becca | 0.73 | EFB2_00442 | | Ribulose-phosphate 3-epimerase | 0.53 | EFB2_02665 | | Tryptophan synthase beta chain | — | — |
| Escherichia coli ECRC62 | 0.73 | BNILDI_02600 | dam | adenine-specific DNA-methyltransferase | 0.53 | BNILDI_18475 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_17130 | dam | adenine-specific DNA-methyltransferase | 0.53 | OKFHMN_02670 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_11010 | dam | adenine-specific DNA-methyltransferase | 0.53 | KEDOAH_26080 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_08920 | dam | adenine-specific DNA-methyltransferase | 0.53 | NOLOHH_20330 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli BW25113 | 0.73 | b3386 | rpe | ribulose-phosphate 3-epimerase (NCBI) | 0.53 | b1261 | trpB | tryptophan synthase subunit beta (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_00317 | | Ribulose-phosphate 3-epimerase | 0.53 | OHPLBJKB_02422 | | Tryptophan synthase beta chain | — | — |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS19345 | | ribulose-phosphate 3-epimerase | 0.53 | ECOLIN_RS07600 | | tryptophan synthase subunit beta | low | > 55 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.72 | GFF633 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.53 | GFF2725 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.72 | MPMX20_04275 | | Ribulose-phosphate 3-epimerase | 0.54 | MPMX20_02513 | | Tryptophan synthase beta chain | low | > 85 |
| Shewanella amazonensis SB2B | 0.71 | Sama_3362 | | ribulose-phosphate 3-epimerase (RefSeq) | 0.53 | Sama_2133 | | tryptophan synthase subunit beta (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.71 | SO0292 | rpe | ribulose-phosphate 3-epimerase (NCBI ptt file) | 0.53 | SO3023 | trpB | tryptophan synthase, beta subunit (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_3888 | | ribulose-5-phosphate 3-epimerase (RefSeq) | 0.53 | Shewana3_1516 | | tryptophan synthase subunit beta (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.71 | LU632_RS22850 | rpe | ribulose-phosphate 3-epimerase | 0.54 | LU632_RS12770 | trpB | tryptophan synthase subunit beta | — | — |
| Pectobacterium carotovorum WPP14 | 0.71 | HER17_RS01795 | | ribulose-phosphate 3-epimerase | 0.54 | HER17_RS10935 | | tryptophan synthase subunit beta | low | > 75 |
| Pantoea sp. MT58 | 0.70 | IAI47_01910 | | ribulose-phosphate 3-epimerase | 0.53 | IAI47_09170 | | tryptophan synthase subunit beta | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_0219 | | ribulose-phosphate 3-epimerase (RefSeq) | 0.54 | Shew_2255 | | tryptophan synthase subunit beta (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | 0.66 | Psyr_0034 | | tryptophan synthase, beta chain | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | 0.66 | Psyr_0034 | | tryptophan synthase, beta chain | — | — |
| Rahnella sp. WP5 | 0.70 | EX31_RS04705 | | ribulose-phosphate 3-epimerase | 0.54 | EX31_RS09975 | | tryptophan synthase subunit beta | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_13285 | | ribulose-phosphate 3-epimerase | 0.54 | CSW01_05930 | | tryptophan synthase subunit beta | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_3652 | | ribulose-phosphate 3-epimerase | 0.70 | Psest_0063 | | tryptophan synthase, beta subunit | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS12200 | | ribulose-phosphate 3-epimerase | 0.72 | ABZR86_RS08000 | | tryptophan synthase subunit beta | 0.63 | 55 |
| Pseudomonas sp. RS175 | 0.69 | PFR28_04049 | | Ribulose-phosphate 3-epimerase | 0.68 | PFR28_04715 | | Tryptophan synthase beta chain | — | — |
| Pseudomonas fluorescens SBW25 | 0.69 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | 0.69 | PFLU_RS00180 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.69 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | 0.69 | PFLU_RS00180 | | tryptophan synthase subunit beta | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.69 | GFF2197 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.79 | GFF3355 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 90 |
| Pseudomonas putida KT2440 | 0.69 | PP_0415 | | ribulose-5-phosphate 3-epimerase | 0.66 | PP_0083 | | tryptophan synthase beta chain | — | — |
| Pseudomonas simiae WCS417 | 0.69 | PS417_25735 | | ribulose-phosphate 3-epimerase | 0.68 | PS417_00185 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.69 | Pf1N1B4_2543 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.69 | Pf1N1B4_1831 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Lysobacter sp. OAE881 | 0.69 | ABIE51_RS04135 | | ribulose-phosphate 3-epimerase | 0.71 | ABIE51_RS08260 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.68 | PfGW456L13_1215 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.68 | PfGW456L13_566 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_4820 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.68 | Pf6N2E2_4048 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Castellaniella sp019104865 MT123 | 0.68 | ABCV34_RS10270 | | ribulose-phosphate 3-epimerase | 0.81 | ABCV34_RS08435 | | tryptophan synthase subunit beta | — | — |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_0267 | | ribulose-phosphate 3-epimerase | 0.54 | B158DRAFT_2429 | | tryptophan synthase, beta subunit | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_14410 | | ribulose phosphate epimerase | 0.68 | AO356_10915 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas sp. S08-1 | 0.68 | OH686_15115 | | ribulose-phosphate 3-epimerase | 0.70 | OH686_12425 | | tryptophan synthase, beta subunit | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_07240 | | ribulose phosphate epimerase | 0.68 | AO353_10710 | | tryptophan synthase subunit beta | — | — |
| Marinobacter adhaerens HP15 | 0.66 | HP15_3286 | | ribulose-phosphate 3-epimerase-like protein | 0.67 | HP15_1827 | | tryptophan synthase, beta subunit | — | — |
| Azospirillum sp. SherDot2 | 0.65 | MPMX19_02946 | | Ribulose-phosphate 3-epimerase | 0.67 | MPMX19_02736 | | Tryptophan synthase beta chain | low | > 112 |
| Variovorax sp. OAS795 | 0.65 | ABID97_RS04905 | | ribulose-phosphate 3-epimerase | 0.77 | ABID97_RS08430 | | tryptophan synthase subunit beta | — | — |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00441 | | Ribulose-phosphate 3-epimerase | 0.53 | MIT1002_01426 | | Tryptophan synthase beta chain | — | — |
| Variovorax sp. SCN45 | 0.65 | GFF6246 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.78 | GFF3883 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.64 | Xcc-8004.605.1 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.71 | Xcc-8004.1964.1 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Acinetobacter radioresistens SK82 | 0.64 | MPMX26_02569 | | Ribulose-phosphate 3-epimerase | 0.72 | MPMX26_02617 | | Tryptophan synthase beta chain | — | — |
| Rhodanobacter denitrificans MT42 | 0.64 | LRK55_RS11120 | | ribulose-phosphate 3-epimerase | 0.70 | LRK55_RS01465 | | tryptophan synthase subunit beta | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.64 | LRK54_RS11390 | | ribulose-phosphate 3-epimerase | 0.70 | LRK54_RS01685 | | tryptophan synthase subunit beta | — | — |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_12435 | rpe | ribulose-phosphate 3-epimerase | 0.70 | OKGIIK_04845 | trpB | tryptophan synthase subunit beta | — | — |
| Acidovorax sp. GW101-3H11 | 0.62 | Ac3H11_757 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | 0.77 | Ac3H11_1534 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A2402 | | Ribulose-phosphate 3-epimerase (NCBI) | 0.66 | Rru_A3427 | | Tryptophan synthase, beta chain (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.52 | Ga0059261_2240 | | ribulose-phosphate 3-epimerase | 0.67 | Ga0059261_0238 | | tryptophan synthase, beta subunit | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS13160 | | ribulose-phosphate 3-epimerase | 0.62 | A4249_RS11330 | | tryptophan synthase subunit beta | — | — |
| Synechococcus elongatus PCC 7942 | 0.51 | Synpcc7942_0604 | rpe | ribulose-phosphate 3-epimerase | 0.61 | Synpcc7942_2143 | trpB | tryptophan synthase subunit beta | — | — |
| Caulobacter crescentus NA1000 | 0.50 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | 0.61 | CCNA_03658 | | tryptophan synthase beta chain | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.50 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | 0.61 | CCNA_03658 | | tryptophan synthase beta chain | — | — |
| Magnetospirillum magneticum AMB-1 | 0.50 | AMB_RS06980 | | ribulose-phosphate 3-epimerase | 0.67 | AMB_RS20295 | | tryptophan synthase subunit beta | — | — |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS10105 | | ribulose-phosphate 3-epimerase | 0.64 | ABIE40_RS19335 | | tryptophan synthase subunit beta | — | — |
| Sinorhizobium meliloti 1021 | 0.46 | SMc00511 | | D-ribulose-5-phosphate 3-epimerase | 0.64 | SMc02766 | | tryptophan synthase subunit beta | low | > 103 |
| Agrobacterium fabrum C58 | 0.46 | Atu1839 | | ribulose-phosphate 3-epimerase | 0.64 | Atu0018 | | tryptophan synthase beta subunit | — | — |
| Azospirillum brasilense Sp245 | 0.45 | AZOBR_RS06755 | | ribulose-phosphate 3-epimerase | 0.68 | AZOBR_RS00525 | | tryptophan synthase subunit beta | — | — |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_3006 | | Ribulose-phosphate 3-epimerase (RefSeq) | 0.65 | Dshi_1031 | | tryptophan synthase, beta subunit (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.44 | DVU2531 | rpe | ribulose-phosphate 3-epimerase (TIGR) | 0.57 | DVU0085 | trpB-1 | tryptophan synthase, beta subunit (TIGR) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c04170 | | ribulose-phosphate 3-epimerase Rpe | 0.66 | PGA1_c04870 | | tryptophan synthase beta chain | — | — |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_019755 | | ribulose-phosphate 3-epimerase | 0.67 | TX73_000360 | | tryptophan synthase subunit beta | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS08990 | | ribulose-phosphate 3-epimerase | 0.56 | CA265_RS05020 | | tryptophan synthase subunit beta | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.40 | CA264_21180 | | ribulose-phosphate 3-epimerase | 0.55 | CA264_05080 | | tryptophan synthase subunit beta | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.39 | Rv1408 | | Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) | 0.62 | Rv1612 | | Tryptophan synthase, beta subunit TrpB | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.39 | DvMF_0977 | | Ribulose-phosphate 3-epimerase (RefSeq) | 0.57 | DvMF_2237 | | tryptophan synthase subunit beta (RefSeq) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.38 | ABZR88_RS06500 | | ribulose-phosphate 3-epimerase | 0.57 | ABZR88_RS10665 | | tryptophan synthase subunit beta | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.37 | Echvi_3575 | | ribulose-phosphate 3-epimerase | 0.54 | Echvi_2510 | | tryptophan synthase, beta subunit | — | — |
| Bacteroides ovatus ATCC 8483 | 0.37 | BACOVA_01203 | | ribulose-phosphate 3-epimerase | 0.50 | BACOVA_03779 | | tryptophan synthase, beta subunit | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT3946 | | ribulose-phosphate 3-epimerase (NCBI ptt file) | 0.51 | BT0533 | | tryptophan synthase beta chain (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS00800 | | ribulose-phosphate 3-epimerase | 0.52 | HMPREF1078_RS00150 | | tryptophan synthase subunit beta | — | — |
| Bacteroides stercoris CC31F | 0.36 | HMPREF1181_RS06505 | | ribulose-phosphate 3-epimerase | 0.53 | HMPREF1181_RS15320 | | tryptophan synthase subunit beta | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.36 | HMPREF1058_RS07710 | | ribulose-phosphate 3-epimerase | 0.51 | HMPREF1058_RS07170 | | tryptophan synthase subunit beta | — | — |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS00225 | | ribulose-phosphate 3-epimerase | 0.51 | ABI39_RS21045 | | tryptophan synthase subunit beta | — | — |
| Methanococcus maripaludis JJ | 0.35 | MMJJ_RS08595 | | ribulose-phosphate 3-epimerase | 0.58 | MMJJ_RS09190 | | tryptophan synthase subunit beta | — | — |
| Methanococcus maripaludis S2 | 0.35 | MMP_RS05755 | | ribulose-phosphate 3-epimerase | 0.58 | MMP_RS05190 | | tryptophan synthase subunit beta | — | — |
Not shown: 2 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS33875 only