Conservation of cofitness between BT0544 and BT0548 in Bacteroides thetaiotaomicron VPI-5482

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0544 ammonium transporter (NCBI ptt file) 1.0 BT0548 diaminopimelate epimerase (NCBI ptt file) 0.58 8
Bacteroides stercoris CC31F 0.78 HMPREF1181_RS16015 ammonium transporter 0.69 HMPREF1181_RS16035 diaminopimelate epimerase low > 56
Phocaeicola vulgatus CL09T03C04 0.75 HMPREF1058_RS06895 ammonium transporter 0.57 HMPREF1058_RS06915 diaminopimelate epimerase 0.63 5
Phocaeicola dorei CL03T12C01 0.74 ABI39_RS14275 ammonium transporter 0.65 ABI39_RS14295 diaminopimelate epimerase 0.75 12
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_0442 amt1 ammonium transporter 0.41 Synpcc7942_1927 dapF diaminopimelate epimerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1454 ammonium transporter 0.19 Echvi_1430 diaminopimelate epimerase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS11465 ammonium transporter 0.18 ABZR88_RS21670 diaminopimelate epimerase — —
Shewanella loihica PV-4 0.29 Shew_0847 Rh family protein/ammonium transporter (RefSeq) 0.34 Shew_0323 dapF diaminopimelate epimerase (RefSeq) — —
Shewanella oneidensis MR-1 0.29 SO0760 amt ammonium transporter (NCBI ptt file) 0.34 SO4308 dapF diaminopimelate epimerase (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_0144 ammonium transporter (RefSeq) 0.34 Dshi_3228 Diaminopimelate epimerase (RefSeq) — —
Shewanella sp. ANA-3 0.29 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) 0.34 Shewana3_0391 dapF diaminopimelate epimerase (RefSeq) — —
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_3023 ammonium transporter (RefSeq) 0.19 DvMF_0561 dapF diaminopimelate epimerase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_03200 ammonium transporter 0.36 CSW01_00640 diaminopimelate epimerase — —
Shewanella amazonensis SB2B 0.28 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.33 Sama_3249 dapF diaminopimelate epimerase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29410 ammonium transporter 0.31 PGA1_c33950 diaminopimelate epimerase DapF — —
Pseudomonas sp. S08-1 0.27 OH686_13765 Ammonium transporter 0.35 OH686_13795 diaminopimelate epimerase — —
Pseudomonas stutzeri RCH2 0.26 Psest_3771 probable ammonium transporter, marine subtype 0.35 Psest_3765 diaminopimelate epimerase — —
Marinobacter adhaerens HP15 0.25 HP15_274 ammonium/methylammonium permease 0.37 HP15_248 diaminopimelate epimerase — —
Alteromonas macleodii MIT1002 0.25 MIT1002_00417 Ammonia transporter 0.34 MIT1002_00159 Diaminopimelate epimerase — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_03766 ammonium transporter 0.88 BACOVA_03762 diaminopimelate epimerase low > 94
Methanococcus maripaludis JJ 0.23 MMJJ_RS05110 ammonium transporter 0.52 MMJJ_RS00375 diaminopimelate epimerase — —
Methanococcus maripaludis S2 0.22 MMP_RS00375 ammonium transporter 0.51 MMP_RS04760 diaminopimelate epimerase — —
Acinetobacter radioresistens SK82 0.22 MPMX26_00674 Ammonia channel 0.31 MPMX26_02231 Diaminopimelate epimerase — —
Enterobacter sp. TBS_079 0.22 MPMX20_01043 Ammonia channel 0.34 MPMX20_04467 Diaminopimelate epimerase low > 85
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2518 ammonium transporter 0.33 EX28DRAFT_4478 diaminopimelate epimerase (EC 5.1.1.7) low > 76
Escherichia fergusonii Becca 0.21 EFB2_03606 Ammonia channel 0.34 EFB2_04828 Diaminopimelate epimerase — —
Azospirillum sp. SherDot2 0.21 MPMX19_02223 Ammonia channel 0.39 MPMX19_00602 Diaminopimelate epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF4368 Ammonium transporter 0.33 GFF237 Diaminopimelate epimerase (EC 5.1.1.7) — —
Escherichia coli Nissle 1917 0.21 ECOLIN_RS02700 ammonium transporter AmtB 0.34 ECOLIN_RS21865 diaminopimelate epimerase — —
Escherichia coli ECRC101 0.21 MCAODC_27485 amtB ammonium transporter AmtB 0.34 MCAODC_04935 dapF diaminopimelate epimerase — —
Escherichia coli BL21 0.21 ECD_00403 ammonium transporter 0.34 ECD_03685 diaminopimelate epimerase low > 61
Escherichia coli ECRC102 0.21 NIAGMN_06315 amtB ammonium transporter AmtB 0.34 NIAGMN_12185 dapF diaminopimelate epimerase — —
Escherichia coli ECOR27 0.21 NOLOHH_01195 amtB ammonium transporter AmtB 0.34 NOLOHH_06560 dapF diaminopimelate epimerase — —
Escherichia coli ECRC98 0.21 JDDGAC_11915 amtB ammonium transporter AmtB 0.34 JDDGAC_18055 dapF diaminopimelate epimerase — —
Escherichia coli ECRC100 0.21 OKFHMN_08260 amtB ammonium transporter AmtB 0.34 OKFHMN_14430 dapF diaminopimelate epimerase — —
Escherichia coli ECOR38 0.21 HEPCGN_06875 amtB ammonium transporter AmtB 0.34 HEPCGN_13135 dapF diaminopimelate epimerase — —
Escherichia coli ECRC62 0.21 BNILDI_22610 amtB ammonium transporter AmtB 0.34 BNILDI_04975 dapF diaminopimelate epimerase — —
Escherichia coli BW25113 0.21 b0451 amtB ammonium transporter (NCBI) 0.34 b3809 dapF diaminopimelate epimerase (VIMSS) — —
Escherichia coli ECRC99 0.21 KEDOAH_19705 amtB ammonium transporter AmtB 0.34 KEDOAH_13720 dapF diaminopimelate epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03222 Ammonia channel 0.34 OHPLBJKB_04241 Diaminopimelate epimerase — —
Rhodospirillum rubrum S1H 0.21 Rru_A1129 Ammonium transporter (NCBI) 0.34 Rru_A1183 Diaminopimelate epimerase (NCBI) — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU1231 amt ammonium transporter (TIGR) 0.20 DVU1867 dapF diaminopimelate epimerase (TIGR) — —
Variovorax sp. SCN45 0.21 GFF6676 Ammonium transporter 0.36 GFF4493 Diaminopimelate epimerase (EC 5.1.1.7) — —
Pectobacterium carotovorum WPP14 0.21 HER17_RS15785 ammonium transporter AmtB 0.35 HER17_RS01340 diaminopimelate epimerase — —
Pantoea sp. MT58 0.21 IAI47_14580 ammonium transporter AmtB 0.34 IAI47_18410 diaminopimelate epimerase low > 76
Klebsiella michiganensis M5al 0.21 BWI76_RS06605 ammonium transporter 0.31 BWI76_RS01200 diaminopimelate epimerase low > 92
Variovorax sp. OAS795 0.20 ABID97_RS20920 ammonium transporter 0.34 ABID97_RS06135 diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_30065 ammonia channel protein 0.34 AO356_12735 diaminopimelate epimerase low > 104
Erwinia tracheiphila SCR3 0.20 LU632_RS18270 amtB ammonium transporter AmtB 0.34 LU632_RS24145 dapF diaminopimelate epimerase — —
Magnetospirillum magneticum AMB-1 0.20 AMB_RS00080 ammonium transporter 0.36 AMB_RS01095 diaminopimelate epimerase — —
Ralstonia solanacearum PSI07 0.20 RPSI07_RS22460 ammonia channel protein 0.36 RPSI07_RS23305 diaminopimelate epimerase — —
Ralstonia solanacearum GMI1000 0.20 RS_RS01690 ammonium transporter 0.32 RS_RS00675 diaminopimelate epimerase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS00845 ammonia channel protein 0.40 AZOBR_RS14160 diaminopimelate epimerase — —
Serratia liquefaciens MT49 0.20 IAI46_05085 ammonium transporter AmtB 0.34 IAI46_00715 diaminopimelate epimerase — —
Paraburkholderia sabiae LMG 24235 0.20 QEN71_RS23255 ammonium transporter 0.35 QEN71_RS00365 diaminopimelate epimerase — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS01760 ammonia channel protein 0.35 RR42_RS01250 diaminopimelate epimerase — —
Acidovorax sp. GW101-3H11 0.20 Ac3H11_1462 Ammonium transporter 0.32 Ac3H11_1993 Diaminopimelate epimerase (EC 5.1.1.7) — —
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS11425 ammonium transporter 0.34 PFLU_RS29270 diaminopimelate epimerase — —
Pseudomonas fluorescens SBW25 0.20 PFLU_RS11425 ammonium transporter 0.34 PFLU_RS29270 diaminopimelate epimerase low > 109
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS02900 ammonium transporter 0.34 HSERO_RS21455 diaminopimelate epimerase — —
Rahnella sp. WP5 0.20 EX31_RS22320 ammonium transporter AmtB 0.35 EX31_RS15155 diaminopimelate epimerase low > 89
Ralstonia solanacearum UW163 0.20 UW163_RS02730 ammonia channel protein 0.36 UW163_RS03515 diaminopimelate epimerase — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS10850 ammonia channel protein 0.36 RALBFv3_RS10065 diaminopimelate epimerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS14975 ammonia channel protein 0.20 CA265_RS23025 diaminopimelate epimerase — —
Rhodopseudomonas palustris CGA009 0.20 TX73_001425 ammonium transporter 0.27 TX73_001300 diaminopimelate epimerase — —
Paraburkholderia graminis OAS925 0.20 ABIE53_001796 Amt family ammonium transporter 0.35 ABIE53_000428 diaminopimelate epimerase — —
Lysobacter sp. OAE881 0.20 ABIE51_RS01435 ammonium transporter 0.26 ABIE51_RS03025 diaminopimelate epimerase — —
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_2277 ammonium transporter 0.34 Psyr_0183 diaminopimelate epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_2277 ammonium transporter 0.34 Psyr_0183 diaminopimelate epimerase — —
Dickeya dianthicola ME23 0.19 DZA65_RS06070 ammonium transporter AmtB 0.35 DZA65_RS21100 diaminopimelate epimerase — —
Dickeya dianthicola 67-19 0.19 HGI48_RS05745 ammonium transporter AmtB 0.35 HGI48_RS20055 diaminopimelate epimerase — —
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS06700 ammonium transporter 0.36 ABZR87_RS05580 diaminopimelate epimerase low > 80
Burkholderia phytofirmans PsJN 0.19 BPHYT_RS07910 ammonium transporter 0.35 BPHYT_RS01665 diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_4412 Ammonium transporter 0.34 Pf6N2E2_4418 Diaminopimelate epimerase (EC 5.1.1.7) low > 103
Pseudomonas sp. RS175 0.19 PFR28_04382 Ammonia channel 0.33 PFR28_04376 Diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_243 Ammonium transporter 0.34 Pf1N1B4_2173 Diaminopimelate epimerase (EC 5.1.1.7) low > 87
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_05071 ammonium transporter 0.36 H281DRAFT_02200 diaminopimelate epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_19220 ammonium transporter 0.35 AO353_09040 diaminopimelate epimerase low > 101
Pseudomonas simiae WCS417 0.19 PS417_08635 ammonium transporter 0.35 PS417_27585 diaminopimelate epimerase low > 88
Pseudomonas fluorescens GW456-L13 0.18 PfGW456L13_2267 Ammonium transporter 0.34 PfGW456L13_844 Diaminopimelate epimerase (EC 5.1.1.7) low > 87
Dechlorosoma suillum PS 0.18 Dsui_1062 ammonia permease 0.37 Dsui_0649 diaminopimelate epimerase — —
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS09495 ammonium transporter 0.29 ABZR86_RS15015 diaminopimelate epimerase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.18 GFF1922 Ammonium transporter 0.35 GFF545 Diaminopimelate epimerase (EC 5.1.1.7) — —
Rhodanobacter denitrificans MT42 0.18 LRK55_RS07860 ammonium transporter 0.26 LRK55_RS08310 diaminopimelate epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.18 LRK54_RS08110 ammonium transporter 0.26 LRK54_RS08545 diaminopimelate epimerase — —
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.249.1 Ammonium transporter 0.25 Xcc-8004.845.1 Diaminopimelate epimerase (EC 5.1.1.7) — —
Pseudomonas putida KT2440 0.18 PP_2106 putative Ammonium transporter 0.34 PP_5228 diaminopimelate epimerase — —
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_2256 ammonium transporter 0.18 Ga0059261_2394 diaminopimelate epimerase (EC 5.1.1.7) — —
Rhizobium sp. OAE497 0.18 ABIE40_RS18420 ammonium transporter 0.25 ABIE40_RS18325 diaminopimelate epimerase — —
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_14925 Ammonium transporter 0.28 OKGIIK_15335 dapF diaminopimelate epimerase — —
Dickeya dadantii 3937 0.17 DDA3937_RS05700 ammonium transporter AmtB 0.34 DDA3937_RS19900 diaminopimelate epimerase — —
Caulobacter crescentus NA1000 0.17 CCNA_01399 ammonium transporter/methylammonium transporter 0.30 CCNA_03800 diaminopimelate epimerase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_01399 ammonium transporter/methylammonium transporter 0.30 CCNA_03800 diaminopimelate epimerase — —
Bosea sp. OAE506 0.17 ABIE41_RS04755 ammonium transporter 0.33 ABIE41_RS11700 diaminopimelate epimerase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.17 A4249_RS09990 ammonium transporter 0.32 A4249_RS13290 diaminopimelate epimerase — —
Sinorhizobium meliloti 1021 0.16 SMc03807 ammonium transporter 0.23 SMc03856 diaminopimelate epimerase — —
Castellaniella sp019104865 MT123 0.16 ABCV34_RS04770 ammonium transporter 0.29 ABCV34_RS13465 diaminopimelate epimerase — —
Agrobacterium fabrum C58 0.16 Atu2758 ammonium transporter 0.20 Atu2695 diaminopimelate epimerase — —
Bifidobacterium breve UCC2003 0.15 BBR_RS11515 ammonium transporter 0.19 BBR_RS13700 diaminopimelate epimerase low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_09145 ammonia channel protein 0.19 CA264_19550 diaminopimelate epimerase — —
Mycobacterium tuberculosis H37Rv 0.14 Rv2920c Probable ammonium-transport integral membrane protein Amt 0.16 Rv2726c Probable diaminopimelate epimerase DapF (DAP epimerase) — —

Not shown: 0 genomes with orthologs for BT0544 only; 2 genomes with orthologs for BT0548 only