Conservation of cofitness between SO3462 and SO3294 in Shewanella oneidensis MR-1

107 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO3462 recN DNA repair protein RecN (NCBI ptt file) 1.0 SO3294 xseA exodeoxyribonuclease VII, large subunit (NCBI ptt file) 0.42 14
Shewanella sp. ANA-3 0.97 Shewana3_1104 recombination and repair protein (RefSeq) 0.92 Shewana3_1234 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 73
Shewanella amazonensis SB2B 0.81 Sama_1026 recombination and repair protein (RefSeq) 0.67 Sama_2360 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_1196 recombination and repair protein (RefSeq) 0.74 Shew_1296 xseA exodeoxyribonuclease VII large subunit (RefSeq) low > 60
Rahnella sp. WP5 0.55 EX31_RS21760 DNA repair protein RecN 0.47 EX31_RS20455 exodeoxyribonuclease VII large subunit low > 89
Escherichia coli BL21 0.55 ECD_02504 recombination and repair protein 0.47 ECD_02401 exonuclease VII, large subunit low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4162 DNA repair protein RecN 0.47 GFF2159 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_04395 DNA repair protein RecN 0.52 CSW01_03975 exodeoxyribonuclease VII large subunit low > 62
Escherichia fergusonii Becca 0.55 EFB2_01277 DNA repair protein RecN 0.46 EFB2_01384 Exodeoxyribonuclease 7 large subunit low > 86
Escherichia coli ECRC62 0.55 BNILDI_11620 recN DNA repair protein RecN 0.47 BNILDI_12205 xseA exodeoxyribonuclease VII large subunit low > 75
Escherichia coli ECOR38 0.55 HEPCGN_20265 recN DNA repair protein RecN 0.47 HEPCGN_20895 xseA exodeoxyribonuclease VII large subunit low > 88
Escherichia coli ECRC101 0.55 MCAODC_11670 recN DNA repair protein RecN 0.46 MCAODC_12285 xseA exodeoxyribonuclease VII large subunit low > 88
Escherichia coli Nissle 1917 0.55 ECOLIN_RS14775 DNA repair protein RecN 0.47 ECOLIN_RS14245 exodeoxyribonuclease VII large subunit 0.32 6
Escherichia coli ECOR27 0.55 NOLOHH_12815 recN DNA repair protein RecN 0.47 NOLOHH_13405 xseA exodeoxyribonuclease VII large subunit low > 76
Escherichia coli ECRC102 0.55 NIAGMN_18915 recN DNA repair protein RecN 0.46 NIAGMN_19525 xseA exodeoxyribonuclease VII large subunit low > 80
Escherichia coli ECRC100 0.55 OKFHMN_21145 recN DNA repair protein RecN 0.46 OKFHMN_21755 xseA exodeoxyribonuclease VII large subunit low > 79
Escherichia coli ECRC99 0.55 KEDOAH_07075 recN DNA repair protein RecN 0.46 KEDOAH_06465 xseA exodeoxyribonuclease VII large subunit
Escherichia coli BW25113 0.55 b2616 recN recombination and repair protein (NCBI) 0.47 b2509 xseA exodeoxyribonuclease VII large subunit (NCBI) 0.54 6
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01091 DNA repair protein RecN 0.47 OHPLBJKB_01200 Exodeoxyribonuclease 7 large subunit low > 74
Escherichia coli ECRC98 0.55 JDDGAC_24810 recN DNA repair protein RecN 0.46 JDDGAC_25430 xseA exodeoxyribonuclease VII large subunit low > 87
Erwinia amylovora T8 0.55 OLJFJH_10175 DNA repair protein RecN 0.48 OLJFJH_10495 exodeoxyribonuclease VII large subunit low > 58
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS14700 DNA repair protein RecN 0.49 PagCFBP13505_RS14990 exodeoxyribonuclease VII large subunit low > 74
Pantoea sp. MT58 0.54 IAI47_04810 DNA repair protein RecN 0.47 IAI47_05100 exodeoxyribonuclease VII large subunit low > 76
Klebsiella pneumoniae MKP103 0.54 KDGMDA_02250 DNA repair protein RecN 0.47 KDGMDA_28165 exodeoxyribonuclease VII large subunit low > 95
Dickeya dadantii 3937 0.54 DDA3937_RS04325 DNA repair protein RecN 0.49 DDA3937_RS15425 exodeoxyribonuclease VII large subunit low > 74
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2719 DNA repair protein RecN 0.48 EX28DRAFT_0138 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 76
Serratia liquefaciens MT49 0.54 IAI46_19635 DNA repair protein RecN 0.47 IAI46_19215 exodeoxyribonuclease VII large subunit low > 86
Klebsiella michiganensis M5al 0.54 BWI76_RS21560 DNA repair protein RecN 0.48 BWI76_RS21035 exodeoxyribonuclease VII large subunit low > 92
Enterobacter sp. TBS_079 0.53 MPMX20_03486 DNA repair protein RecN 0.48 MPMX20_03383 Exodeoxyribonuclease 7 large subunit low > 85
Dickeya dianthicola 67-19 0.53 HGI48_RS04320 DNA repair protein RecN 0.49 HGI48_RS15540 exodeoxyribonuclease VII large subunit low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS04235 DNA repair protein RecN 0.49 DZA65_RS16615 exodeoxyribonuclease VII large subunit low > 75
Pectobacterium carotovorum WPP14 0.52 HER17_RS17420 DNA repair protein RecN 0.48 HER17_RS06150 exodeoxyribonuclease VII large subunit low > 75
Erwinia tracheiphila SCR3 0.52 LU632_RS16985 recN DNA repair protein RecN 0.48 LU632_RS17760 xseA exodeoxyribonuclease VII large subunit low > 74
Erwinia tracheiphila HP pepo 2.2 0.52 IJEDHG_26925 recN DNA repair protein RecN 0.48 IJEDHG_02730 xseA exodeoxyribonuclease VII large subunit low > 61
Alteromonas macleodii MIT1002 0.45 MIT1002_01443 Recombination protein N 0.46 MIT1002_02780 Exodeoxyribonuclease 7 large subunit low > 70
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_5106 DNA repair protein RecN 0.38 PfGW456L13_4851 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.32 42
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1178 DNA repair protein RecN 0.39 Pf1N1B4_844 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.22 78
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3370 DNA repair protein RecN 0.39 Pf6N2E2_3168 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.44 15
Marinobacter adhaerens HP15 0.42 HP15_3084 DNA repair protein RecN 0.42 HP15_2052 exodeoxyribonuclease VII large subunit low > 73
Pseudomonas sp. S08-1 0.42 OH686_17050 DNA repair protein RecN 0.39 OH686_17580 exodeoxyribonuclease VII, large subunit low > 80
Pseudomonas sp. DMC3 0.42 GFF4971 DNA repair protein RecN 0.39 GFF4330 Exodeoxyribonuclease 7 large subunit low > 89
Pseudomonas aeruginosa PA14 0.42 IKLFDK_29775 DNA repair protein RecN 0.37 IKLFDK_19450 exodeoxyribonuclease VII large subunit low > 100
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_4197 DNA replication and repair protein RecN 0.40 Psyr_1259 Exodeoxyribonuclease VII large subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_4197 DNA replication and repair protein RecN 0.40 Psyr_1259 Exodeoxyribonuclease VII large subunit low > 86
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05660 DNA repair protein RecN 0.39 AO353_15935 exodeoxyribonuclease 0.40 25
Pseudomonas sp. RS175 0.41 PFR28_00071 DNA repair protein RecN 0.39 PFR28_00307 Exodeoxyribonuclease 7 large subunit low > 88
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07510 DNA repair protein RecN 0.40 AO356_06540 exodeoxyribonuclease 0.52 15
Pseudomonas sp. SVBP6 0.41 COO64_RS15270 recN DNA repair protein RecN 0.41 COO64_RS04640 xseA exodeoxyribonuclease VII large subunit low > 93
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04964 DNA repair protein RecN 0.39 GEMAOFIL_04772 Exodeoxyribonuclease 7 large subunit low > 93
Pseudomonas simiae WCS417 0.41 PS417_24070 recombination and repair protein 0.39 PS417_23095 exodeoxyribonuclease low > 88
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS24755 exodeoxyribonuclease VII large subunit low > 109
Pseudomonas fluorescens SBW25 0.40 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS24755 exodeoxyribonuclease VII large subunit low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_0962 DNA repair protein RecN 0.40 Psest_1284 exodeoxyribonuclease VII, large subunit 0.20 52
Pseudomonas putida KT2440 0.39 PP_4729 factor used in recombination and DNA repair 0.40 PP_1027 Exodeoxyribonuclease 7 large subunit low > 96
Pseudomonas sp. BP01 0.39 JOY50_RS26735 recN DNA repair protein RecN 0.39 JOY50_RS11480 xseA exodeoxyribonuclease VII large subunit low > 84
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0601 DNA replication and repair protein RecN 0.41 B158DRAFT_1157 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.81 3
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS03060 DNA repair protein 0.35 HSERO_RS05850 exodeoxyribonuclease VII large subunit 0.28 50
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.34 Dsui_3268 exodeoxyribonuclease VII, large subunit 0.38 41
Lysobacter sp. OAE881 0.35 ABIE51_RS11655 DNA repair protein RecN 0.36 ABIE51_RS13750 exodeoxyribonuclease VII large subunit low > 62
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.32 QEN71_RS02835 exodeoxyribonuclease VII large subunit low > 153
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05665 DNA repair protein RecN 0.38 ABZR86_RS06815 exodeoxyribonuclease VII large subunit low > 74
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3431.1 DNA repair protein RecN 0.37 Xcc-8004.2251.1 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 74
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11400 DNA repair protein RecN 0.37 LRK53_RS11825 exodeoxyribonuclease VII large subunit low > 59
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01065 DNA repair protein RecN 0.31 ABZR87_RS00710 exodeoxyribonuclease VII large subunit 0.26 35
Ralstonia solanacearum GMI1000 0.34 RS_RS13275 DNA repair protein RecN 0.30 RS_RS12670 exodeoxyribonuclease VII large subunit 0.35 11
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05415 DNA repair protein RecN 0.30 RALBFv3_RS05060 exodeoxyribonuclease VII large subunit 0.66 1
Ralstonia solanacearum UW163 0.34 UW163_RS08210 DNA repair protein RecN 0.30 UW163_RS08565 exodeoxyribonuclease VII large subunit
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07340 recN DNA repair protein RecN 0.38 OKGIIK_07700 xseA exodeoxyribonuclease VII large subunit low > 52
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11890 DNA repair protein RecN 0.30 RPSI07_RS12235 exodeoxyribonuclease VII large subunit 0.52 7
Methylophilus sp. DMC18 0.33 GFF306 DNA repair protein RecN 0.33 GFF902 Exodeoxyribonuclease 7 large subunit low > 43
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.39 LRK54_RS17185 exodeoxyribonuclease VII large subunit low > 59
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.40 LRK55_RS17410 exodeoxyribonuclease VII large subunit low > 63
Acidovorax sp. GW101-3H11 0.33 Ac3H11_3460 DNA repair protein RecN 0.28 Ac3H11_2382 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 79
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.30 GFF349 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.30 GFF4511 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04692 DNA replication and repair protein RecN 0.33 H281DRAFT_04109 Exodeoxyribonuclease VII large subunit low > 103
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS05910 DNA repair protein 0.34 RR42_RS03475 exodeoxyribonuclease VII large subunit 0.38 21
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.32 BPHYT_RS15865 exodeoxyribonuclease VII large subunit low > 109
Paraburkholderia graminis OAS925 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.33 ABIE53_003344 exodeoxyribonuclease VII large subunit low > 113
Castellaniella sp019104865 MT123 0.30 ABCV34_RS07470 DNA repair protein RecN 0.34 ABCV34_RS05330 exodeoxyribonuclease VII large subunit low > 48
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS02000 DNA repair protein RecN 0.14 HMPREF1078_RS12780 exodeoxyribonuclease VII large subunit low > 61
Acinetobacter radioresistens SK82 0.28 MPMX26_00239 DNA repair protein RecN 0.08 MPMX26_01581 Exodeoxyribonuclease 7 large subunit
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.25 SMc00378 exodeoxyribonuclease VII large subunit 0.30 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.13 Echvi_3954 exodeoxyribonuclease VII, large subunit low > 79
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.15 BT3890 putative exodeoxyribonuclease VII large subunit (NCBI ptt file) low > 81
Bosea sp. OAE506 0.27 ABIE41_RS12645 DNA repair protein RecN 0.25 ABIE41_RS23155 exodeoxyribonuclease VII large subunit 0.52 29
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10900 DNA repair protein RecN 0.14 HMPREF1181_RS06920 exodeoxyribonuclease VII large subunit low > 56
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.23 Atu0269 exodeoxyribonuclease VII large subunit 0.66 1
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.14 ABI39_RS01425 exodeoxyribonuclease VII large subunit low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS18225 DNA repair protein RecN 0.14 HMPREF1058_RS02230 exodeoxyribonuclease VII large subunit low > 67
Azospirillum sp. SherDot2 0.25 MPMX19_01601 DNA repair protein RecN 0.25 MPMX19_01631 Exodeoxyribonuclease 7 large subunit 0.59 15
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.25 Ga0059261_1440 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.15 BACOVA_01111 Exonuclease VII, large subunit low > 96
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.28 PGA1_c23600 exodeoxyribonuclease 7 large subunit 0.29 19
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.26 Rru_A0159 Exodeoxyribonuclease VII (NCBI)
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.22 HUW76_06820 exodeoxyribonuclease VII large subunit low > 35
Xanthobacter sp. DMC5 0.23 GFF2252 DNA repair protein RecN 0.25 GFF3580 Exodeoxyribonuclease 7 large subunit
Rhodopseudomonas palustris CGA009 0.23 TX73_018240 DNA repair protein RecN 0.24 TX73_005960 exodeoxyribonuclease VII large subunit low > 86
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_13235 DNA repair protein RecN 0.15 CA264_02365 exodeoxyribonuclease VII large subunit 0.59 12
Dinoroseobacter shibae DFL-12 0.23 Dshi_2413 DNA repair protein RecN (RefSeq) 0.23 Dshi_2727 exodeoxyribonuclease VII, large subunit (RefSeq)
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.26 A4249_RS09265 exodeoxyribonuclease VII large subunit low > 48
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.27 CCNA_02329 exodeoxyribonuclease VII large subunit low > 66
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.27 CCNA_02329 exodeoxyribonuclease VII large subunit low > 67
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1779 recN DNA repair protein RecN 0.17 Synpcc7942_0368 xseA exodeoxyribonuclease VII large subunit low > 38
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.16 Rv1108c Probable exodeoxyribonuclease VII (large subunit) XseA (exonuclease VII large subunit) low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU2463 recN DNA repair protein RecN (TIGR) 0.30 DVU1346 xseA exodeoxyribonuclease VII, large subunit (TIGR) low > 55
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.17 BBR_RS17920 exodeoxyribonuclease VII large subunit
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0923 SMC domain protein (RefSeq) 0.29 DvMF_0122 exodeoxyribonuclease VII, large subunit (RefSeq) 0.79 1

Not shown: 8 genomes with orthologs for SO3462 only; 4 genomes with orthologs for SO3294 only