Conservation of cofitness between b2020 and b2023 in Escherichia coli BW25113

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2020 hisD histidinol dehydrogenase (NCBI) 1.0 b2023 hisH imidazole glycerol phosphate synthase subunit HisH (NCBI) 0.94 18
Escherichia coli ECOR27 0.99 NOLOHH_15830 hisD Histidinol dehydrogenase 1.00 NOLOHH_15815 hisH imidazole glycerol phosphate synthase subunit HisH low > 57
Escherichia coli BL21 0.99 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 1.00 ECD_01925 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit low > 60
Escherichia coli ECRC62 0.99 BNILDI_14740 hisD Histidinol dehydrogenase 1.00 BNILDI_14725 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli Nissle 1917 0.99 ECOLIN_RS11945 histidinol dehydrogenase 1.00 ECOLIN_RS11960 imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECOR38 0.99 HEPCGN_03220 hisD Histidinol dehydrogenase 1.00 HEPCGN_03205 hisH imidazole glycerol phosphate synthase subunit HisH low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_01680 Histidinol dehydrogenase 1.00 OHPLBJKB_01677 Imidazole glycerol phosphate synthase subunit HisH low > 73
Escherichia fergusonii Becca 0.98 EFB2_01836 Histidinol dehydrogenase 1.00 EFB2_01833 Imidazole glycerol phosphate synthase subunit HisH low > 86
Escherichia coli ECRC102 0.98 NIAGMN_22460 hisD Histidinol dehydrogenase 1.00 NIAGMN_22445 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC101 0.98 MCAODC_20425 hisD Histidinol dehydrogenase 1.00 MCAODC_20440 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC99 0.98 KEDOAH_03635 hisD Histidinol dehydrogenase 1.00 KEDOAH_03650 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC101 0.98 OKFHMN_24515 hisD Histidinol dehydrogenase 1.00 OKFHMN_24500 hisH imidazole glycerol phosphate synthase subunit HisH
Escherichia coli ECRC98 0.98 JDDGAC_28625 hisD Histidinol dehydrogenase 1.00 JDDGAC_28610 hisH imidazole glycerol phosphate synthase subunit HisH
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) 0.93 GFF3909 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0539 histidinol dehydrogenase 0.92 EX28DRAFT_0536 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.84 32
Enterobacter sp. TBS_079 0.89 MPMX20_03002 Histidinol dehydrogenase 0.92 MPMX20_03005 Imidazole glycerol phosphate synthase subunit HisH 0.97 6
Klebsiella michiganensis M5al 0.88 BWI76_RS18925 histidinol dehydrogenase 0.89 BWI76_RS18940 imidazole glycerol phosphate synthase subunit HisH 0.92 2
Serratia liquefaciens MT49 0.85 IAI46_08210 histidinol dehydrogenase 0.82 IAI46_08195 imidazole glycerol phosphate synthase subunit HisH 0.89 4
Pantoea sp. MT58 0.82 IAI47_07090 histidinol dehydrogenase 0.78 IAI47_07075 imidazole glycerol phosphate synthase subunit HisH 0.96 18
Erwinia tracheiphila SCR3 0.81 LU632_RS08945 hisD histidinol dehydrogenase 0.76 LU632_RS08930 hisH imidazole glycerol phosphate synthase subunit HisH 0.90 6
Dickeya dadantii 3937 0.80 DDA3937_RS09735 histidinol dehydrogenase 0.78 DDA3937_RS09720 imidazole glycerol phosphate synthase subunit HisH 0.96 5
Pectobacterium carotovorum WPP14 0.80 HER17_RS12230 histidinol dehydrogenase 0.75 HER17_RS12245 imidazole glycerol phosphate synthase subunit HisH 0.97 14
Dickeya dianthicola 67-19 0.79 HGI48_RS09745 histidinol dehydrogenase 0.77 HGI48_RS09730 imidazole glycerol phosphate synthase subunit HisH 0.43 59
Rahnella sp. WP5 0.79 EX31_RS11440 histidinol dehydrogenase 0.75 EX31_RS11455 imidazole glycerol phosphate synthase subunit HisH 0.95 37
Dickeya dianthicola ME23 0.79 DZA65_RS10055 histidinol dehydrogenase 0.77 DZA65_RS10040 imidazole glycerol phosphate synthase subunit HisH
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_05750 histidinol dehydrogenase 0.62 CSW01_05765 imidazole glycerol phosphate synthase subunit HisH low > 62
Shewanella amazonensis SB2B 0.59 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.46 Sama_1945 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.97 8
Shewanella loihica PV-4 0.57 Shew_2198 histidinol dehydrogenase (RefSeq) 0.53 Shew_2201 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.93 15
Shewanella oneidensis MR-1 0.57 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.49 SO2070 hisH amidotransferase HisH (NCBI ptt file) 0.99 3
Shewanella sp. ANA-3 0.56 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.49 Shewana3_1850 hisH imidazole glycerol phosphate synthase subunit HisH (RefSeq) 0.95 8
Alteromonas macleodii MIT1002 0.54 MIT1002_02633 Histidinol dehydrogenase 0.51 MIT1002_02636 Imidazole glycerol phosphate synthase subunit HisH 0.98 10
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS01605 histidinol dehydrogenase 0.43 LRK54_RS01590 imidazole glycerol phosphate synthase subunit HisH 0.70 24
Rhodanobacter denitrificans MT42 0.53 LRK55_RS01385 histidinol dehydrogenase 0.43 LRK55_RS01370 imidazole glycerol phosphate synthase subunit HisH 0.80 5
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS06730 histidinol dehydrogenase 0.45 ABZR86_RS06715 imidazole glycerol phosphate synthase subunit HisH 0.97 11
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_04950 hisD histidinol dehydrogenase 0.43 OKGIIK_04965 hisH imidazole glycerol phosphate synthase subunit HisH low > 52
Bacteroides ovatus ATCC 8483 0.53 BACOVA_01234 histidinol dehydrogenase 0.41 BACOVA_00221 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.84 62
Bacteroides thetaiotaomicron VPI-5482 0.52 BT0201 histidinol dehydrogenase (NCBI ptt file) 0.42 BT1380 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) 0.72 54
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS15875 histidinol dehydrogenase 0.44 HMPREF1058_RS06165 imidazole glycerol phosphate synthase subunit HisH 0.73 49
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS04860 histidinol dehydrogenase 0.41 HMPREF1181_RS11080 imidazole glycerol phosphate synthase subunit HisH low > 56
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS11835 histidinol dehydrogenase 0.44 ABI39_RS19920 imidazole glycerol phosphate synthase subunit HisH 0.58 61
Lysobacter sp. OAE881 0.49 ABIE51_RS13325 histidinol dehydrogenase 0.40 ABIE51_RS13310 imidazole glycerol phosphate synthase subunit HisH low > 62
Parabacteroides merdae CL09T00C40 0.48 HMPREF1078_RS02450 histidinol dehydrogenase 0.42 HMPREF1078_RS13575 imidazole glycerol phosphate synthase subunit HisH 0.98 14
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.41 Xcc-8004.2945.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) 0.87 14
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_2459 histidinol dehydrogenase 0.36 Echvi_2514 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.92 9
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_05030 histidinol dehydrogenase 0.40 CA264_05100 imidazole glycerol phosphate synthase subunit HisH low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS03635 histidinol dehydrogenase 0.40 CA265_RS03620 imidazole glycerol phosphate synthase subunit HisH 0.96 4
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS06880 histidinol dehydrogenase 0.37 ABZR88_RS06865 imidazole glycerol phosphate synthase subunit HisH
Methanococcus maripaludis JJ 0.38 MMJJ_RS00120 histidinol dehydrogenase 0.36 MMJJ_RS03990 imidazole glycerol phosphate synthase subunit HisH
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS10695 histidinol dehydrogenase 0.40 A4249_RS10705 imidazole glycerol phosphate synthase subunit HisH 0.98 46
Methanococcus maripaludis S2 0.37 MMP_RS05015 histidinol dehydrogenase 0.36 MMP_RS01385 imidazole glycerol phosphate synthase subunit HisH
Sinorhizobium meliloti 1021 0.35 SMc02307 histidinol dehydrogenase 0.30 SMc02572 imidazole glycerol phosphate synthase subunit HisH 0.91 6
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS18915 histidinol dehydrogenase 0.28 RR42_RS18895 imidazole glycerol phosphate synthase
Rhizobium sp. OAE497 0.34 ABIE40_RS02725 histidinol dehydrogenase 0.30 ABIE40_RS19450 imidazole glycerol phosphate synthase subunit HisH 0.99 6
Pseudomonas sp. S08-1 0.34 OH686_08470 Histidinol dehydrogenase 0.31 OH686_14580 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.70 43
Agrobacterium fabrum C58 0.34 Atu0537 histidinol dehydrogenase 0.31 Atu0041 glutamine amidotransferase 0.90 15
Pseudomonas stutzeri RCH2 0.34 Psest_3298 histidinol dehydrogenase 0.31 Psest_0153 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.97 5
Magnetospirillum magneticum AMB-1 0.34 AMB_RS16905 histidinol dehydrogenase 0.28 AMB_RS22935 imidazole glycerol phosphate synthase subunit HisH
Dinoroseobacter shibae DFL-12 0.34 Dshi_0979 Histidinol dehydrogenase (RefSeq) 0.32 Dshi_0795 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq)
Pseudomonas fluorescens SBW25 0.33 PFLU_RS04470 histidinol dehydrogenase 0.30 PFLU_RS01610 imidazole glycerol phosphate synthase subunit HisH 0.59 22
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS04470 histidinol dehydrogenase 0.30 PFLU_RS01610 imidazole glycerol phosphate synthase subunit HisH 0.66 22
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS20345 histidinol dehydrogenase 0.33 HSERO_RS21015 imidazole glycerol phosphate synthase low > 78
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) 0.31 Pf1N1B4_1626 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Pseudomonas simiae WCS417 0.33 PS417_04420 histidinol dehydrogenase 0.30 PS417_01565 imidazole glycerol phosphate synthase 0.92 9
Phaeobacter inhibens DSM 17395 0.33 PGA1_c31190 histidinol dehydrogenase HisD 0.32 PGA1_c09320 imidazole glycerol phosphate synthase subunit HisH
Variovorax sp. OAS795 0.33 ABID97_RS23160 histidinol dehydrogenase 0.32 ABID97_RS23135 imidazole glycerol phosphate synthase subunit HisH
Variovorax sp. SCN45 0.33 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) 0.33 GFF5350 Imidazole glycerol phosphate synthase amidotransferase subunit HisH
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_06965 histidinol dehydrogenase 0.36 AO356_03385 imidazole glycerol phosphate synthase subunit HisH low > 104
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) 0.31 Pf6N2E2_3841 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) 0.88 5
Dechlorosoma suillum PS 0.33 Dsui_1411 histidinol dehydrogenase 0.30 Dsui_1416 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4133 histidinol dehydrogenase 0.30 Psyr_4896 imidazole glycerol phosphate synthase subunit hisH 0.96 4
Marinobacter adhaerens HP15 0.33 HP15_2428 histidinol dehydrogenase 0.33 HP15_3011 imidazole glycerol phosphate synthase subunit HisH
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4133 histidinol dehydrogenase 0.30 Psyr_4896 imidazole glycerol phosphate synthase subunit hisH 0.90 11
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05110 histidinol dehydrogenase 0.31 AO353_12075 imidazole glycerol phosphate synthase subunit HisH 0.94 5
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.30 PfGW456L13_361 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) 0.98 6
Pseudomonas sp. RS175 0.33 PFR28_00187 Histidinol dehydrogenase 0.31 PFR28_04930 Imidazole glycerol phosphate synthase subunit HisH 0.80 6
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1519 hisD histidinol dehydrogenase 0.33 Synpcc7942_1481 hisH imidazole glycerol phosphate synthase subunit HisH
Rhodopseudomonas palustris CGA009 0.32 TX73_023540 histidinol dehydrogenase 0.29 TX73_001615 imidazole glycerol phosphate synthase subunit HisH
Pseudomonas putida KT2440 0.32 PP_0966 Histidinol dehydrogenase 0.31 PP_0290 Imidazole glycerol phosphate synthase subunit HisH 0.91 10
Ralstonia solanacearum PSI07 0.32 RPSI07_RS10390 histidinol dehydrogenase 0.31 RPSI07_RS10410 imidazole glycerol phosphate synthase subunit HisH
Ralstonia sp. UNC404CL21Col 0.32 ABZR87_RS02500 histidinol dehydrogenase 0.30 ABZR87_RS02480 imidazole glycerol phosphate synthase subunit HisH
Acinetobacter radioresistens SK82 0.32 MPMX26_02587 Histidinol dehydrogenase 0.37 MPMX26_02846 Imidazole glycerol phosphate synthase subunit HisH 0.98 7
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) 0.30 Ac3H11_4731 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS06845 histidinol dehydrogenase 0.30 RALBFv3_RS06825 imidazole glycerol phosphate synthase subunit HisH
Ralstonia solanacearum UW163 0.32 UW163_RS06770 histidinol dehydrogenase 0.30 UW163_RS06790 imidazole glycerol phosphate synthase subunit HisH
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0796 hisD histidinol dehydrogenase (TIGR) 0.30 DVU0285 hisH IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) 0.93 2
Ralstonia solanacearum GMI1000 0.32 RS_RS14790 histidinol dehydrogenase 0.31 RS_RS14770 imidazole glycerol phosphate synthase subunit HisH
Azospirillum sp. SherDot2 0.32 MPMX19_05543 Histidinol dehydrogenase 0.32 MPMX19_02545 Imidazole glycerol phosphate synthase subunit HisH
Bosea sp. OAE506 0.32 ABIE41_RS24015 histidinol dehydrogenase 0.32 ABIE41_RS03955 imidazole glycerol phosphate synthase subunit HisH 0.86 4
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_1281 histidinol dehydrogenase 0.30 Ga0059261_3124 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit low > 68
Rhodospirillum rubrum S1H 0.31 Rru_A2771 Histidinol dehydrogenase (NCBI) 0.31 Rru_A3596 Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (NCBI) 0.69 23
Paraburkholderia graminis OAS925 0.31 ABIE53_003701 histidinol dehydrogenase 0.29 ABIE53_003697 glutamine amidotransferase
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS17710 histidinol dehydrogenase 0.29 BPHYT_RS17690 imidazole glycerol phosphate synthase
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS27865 histidinol dehydrogenase 0.30 QEN71_RS27845 imidazole glycerol phosphate synthase subunit HisH 0.95 8
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) 0.30 GFF1311 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Castellaniella sp019104865 MT123 0.31 ABCV34_RS11230 histidinol dehydrogenase 0.25 ABCV34_RS11240 imidazole glycerol phosphate synthase subunit HisH 0.95 6
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_05652 histidinol dehydrogenase 0.29 H281DRAFT_05657 imidazole glycerol phosphate synthase subunit hisH
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) 0.30 DvMF_2305 hisH IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) 0.96 4
Bifidobacterium breve UCC2003 0.28 BBR_RS17055 histidinol dehydrogenase 0.29 BBR_RS17035 imidazole glycerol phosphate synthase subunit HisH 0.77 4
Caulobacter crescentus NA1000 0.27 CCNA_02431 histidinol dehydrogenase 0.31 CCNA_03851 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 0.98 4
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02431 histidinol dehydrogenase 0.31 CCNA_03851 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit low > 67
Mycobacterium tuberculosis H37Rv 0.27 Rv1599 Probable histidinol dehydrogenase HisD (HDH) 0.31 Rv1602 Probable amidotransferase HisH
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2293 histidinol dehydrogenase 0.24 B158DRAFT_2290 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit low > 40

Not shown: 0 genomes with orthologs for b2020 only; 1 genomes with orthologs for b2023 only