Homologs of PP_0994 from Pseudomonas putida KT2440

putative RNA polymerase sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_0994 putative RNA polymerase sigma factor insig. 100 100
o Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 64 98
  Acidovorax sp. GW101-3H11 Ac3H11_1827 RNA polymerase sigma-70 factor, ECF subfamily insig. 65 96
o Variovorax sp. OAS795 ABID97_RS16825 sigma-70 family RNA polymerase sigma factor insig. 63 97
o Pseudomonas stutzeri RCH2 Psest_0114 RNA polymerase sigma factor, sigma-70 family insig. 66 97
  Herbaspirillum seropedicae SmR1 HSERO_RS16195 RNA polymerase sigma factor insig. 63 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 60 97
o Variovorax sp. SCN45 GFF320 RNA polymerase ECF-type sigma factor insig. 63 96
o Dechlorosoma suillum PS Dsui_0155 RNA polymerase sigma factor, sigma-70 family strong 60 97
  Burkholderia phytofirmans PsJN BPHYT_RS25505 RNA polymerase sigma factor insig. 57 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01786 RNA polymerase sigma-70 factor, ECF subfamily insig. 58 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS01090 sigma-70 family RNA polymerase sigma factor insig. 46 100
o Bosea sp. OAE506 ABIE41_RS02435 sigma-70 family RNA polymerase sigma factor insig. 44 93
o Caulobacter crescentus NA1000 CCNA_03362 ECF-family RNA polymerase sigma factor strong 43 94
o Caulobacter crescentus NA1000 Δfur CCNA_03362 ECF-family RNA polymerase sigma factor cofit 43 94
o Xanthobacter sp. DMC5 GFF1206 ECF RNA polymerase sigma factor SigF insig. 43 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3636 RNA polymerase sigma factor, sigma-70 family insig. 41 97
o Sphingobium sp. HT1-2 GFF5259 hypothetical protein insig. 46 81
o Agrobacterium fabrum C58 Atu2268 ECF family sigma factor insig. 42 94
o Erwinia amylovora T8 OLJFJH_08545 RNA polymerase subunit sigma-70 insig. 40 98
  Xanthobacter sp. DMC5 GFF2972 ECF RNA polymerase sigma factor SigF no data 38 92
o Sinorhizobium meliloti 1021 SM_b20531 RNA polymerase sigma factor insig. 36 96
o Rhizobium sp. OAE497 ABIE40_RS01010 sigma-70 family RNA polymerase sigma factor insig. 38 94
o Azospirillum sp. SherDot2 MPMX19_04570 ECF RNA polymerase sigma factor SigF insig. 36 94
  Rhodanobacter sp. FW510-T8 OKGIIK_03490 hypothetical protein insig. 40 88
o Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 38 92
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS13745 sigma-70 family RNA polymerase sigma factor insig. 34 98
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09080 sigma-70 family RNA polymerase sigma factor cofit 41 91
o Pantoea sp. MT58 IAI47_20240 sigma-70 family RNA polymerase sigma factor insig. 36 98
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS13930 RNA polymerase sigma factor insig. 38 91
  Rhizobium sp. OAE497 ABIE40_RS19610 sigma-70 family RNA polymerase sigma factor insig. 33 93
  Rhodanobacter denitrificans MT42 LRK55_RS14380 sigma-70 family RNA polymerase sigma factor insig. 34 96
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS14665 sigma-70 family RNA polymerase sigma factor insig. 34 96
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 33 88
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 30 88
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 30 88
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 30 88
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 32 84
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 30 89
o Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 30 99
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 29 88
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 29 88
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 29 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 28 89
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 27 88
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 27 88
  Sphingobium sp. HT1-2 GFF2317 RNA polymerase ECF-type sigma factor cofit 32 81
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 31 76
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 28 93
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 29 75
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor insig. 28 78
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 29 88
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 29 88
  Xanthobacter sp. DMC5 GFF2321 ECF RNA polymerase sigma factor EcfG no data 33 82
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 30 81
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 28 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04025 RNA polymerase sigma factor insig. 27 89
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 30 87
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 25 90
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3492 RNA polymerase sigma factor, sigma-70 family strong 30 88
  Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 27 85
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 26 88
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 26 88
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 26 88
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 26 88
  Rhodanobacter sp. FW510-T8 OKGIIK_12575 rpoE RNA polymerase subunit sigma-24 insig. 30 72
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 28 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS04205 sigma-70 family RNA polymerase sigma factor insig. 29 72
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2161 RNA polymerase sigma factor, sigma-70 family insig. 28 71
  Shewanella oneidensis MR-1 SO3840 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 25 77
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 27 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24305 hypothetical protein sig. 26 97
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 30 92
  Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 30 82
  Rhodanobacter denitrificans MT42 LRK55_RS11045 sigma-70 family RNA polymerase sigma factor cofit 28 72
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11315 sigma-70 family RNA polymerase sigma factor insig. 28 72
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 28 92
  Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 27 81
  Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 30 86
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 24 92
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 33 73
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 29 83
  Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 27 92
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 32 83
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 27 83
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 25 77
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07715 RNA polymerase sigma factor no data 28 75
  Pseudomonas putida KT2440 PP_3006 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 75
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 28 82
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 26 81
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 27 78
  Sphingobium sp. HT1-2 GFF5325 RNA polymerase ECF-type sigma factor cofit 30 83
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 27 78
  Bacteroides ovatus ATCC 8483 BACOVA_01066 hypothetical protein insig. 28 84
  Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 27 72
  Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 27 72
  Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 27 72
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 26 81
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 26 84