Homologs of PS417_03450 from Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma-54 factor RpoN

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_03450 RNA polymerase sigma factor insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS03525 RNA polymerase sigma factor insig. 96 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS03525 RNA polymerase sigma factor insig. 96 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00902 ECF RNA polymerase sigma factor SigC insig. 95 99
o Pseudomonas orientalis W4I3 QF045_RS06435 RNA polymerase sigma factor insig. 92 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4527 RNA polymerase sigma-70 factor, ECF subfamily insig. 54 86
o Pseudomonas syringae pv. syringae B728a Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 strong 49 89
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 cofit 49 89
o Dickeya dadantii 3937 DDA3937_RS11655 sigma-70 family RNA polymerase sigma factor insig. 47 82
o Dickeya dianthicola 67-19 HGI48_RS11715 RNA polymerase sigma factor insig. 47 82
o Dickeya dianthicola ME23 DZA65_RS12200 RNA polymerase sigma factor insig. 47 82
o Erwinia tracheiphila SCR3 LU632_RS03185 sigma-70 family RNA polymerase sigma factor strong 47 84
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_05665 RNA polymerase subunit sigma strong 47 84
o Erwinia amylovora T8 OLJFJH_08135 RNA polymerase subunit sigma strong 46 84
o Pectobacterium carotovorum WPP14 HER17_RS10020 RNA polymerase sigma factor insig. 45 83
  Herbaspirillum seropedicae SmR1 HSERO_RS03905 RNA polymerase subunit sigma-24 insig. 36 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 36 84
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 33 79
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 82
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 34 81
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 34 81
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 34 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 32 80
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 32 88
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 29 89
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 33 82
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 31 83
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 31 88
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12005 RNA polymerase sigma factor RpoE no data 31 83
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 33 82
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 31 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 31 83
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 31 83
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 34 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 34 83
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 29 83
  Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 32 83
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 31 89
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 33 82
  Sinorhizobium meliloti 1021 SMc01419 RNA polymerase sigma factor protein sig. 36 82
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 30 80
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 33 81
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 31 89
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 33 81
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 31 89
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 32 84
o Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 31 81
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1465 RNA polymerase sigma factor RpoE insig. 33 72
o Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 sig. 31 81
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 30 80
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 30 80
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 30 80
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 30 80
  Sphingobium sp. HT1-2 GFF4975 RNA polymerase ECF-type sigma factor cofit 34 80
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 31 83
  Sphingobium sp. HT1-2 GFF5151 RNA polymerase ECF-type sigma factor cofit 34 80
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 33 88
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 30 81
  Dinoroseobacter shibae DFL-12 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 27 79
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 32 80
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 35 85
  Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 31 78
  Klebsiella pneumoniae MKP103 KDGMDA_28480 RNA polymerase sigma factor RpoE no data 31 78
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 27 81
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 31 80
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 31 82
  Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 81
  Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 32 88
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 88
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 88
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 88
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 34 83
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01235 rpoE RNA polymerase sigma factor RpoE strong 32 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 30 88
  Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 29 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 30 80
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 34 85
  Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 32 78
  Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 29 79
  Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 29 79
  Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 29 79
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 29 81
  Bacteroides thetaiotaomicron VPI-5482 BT2383 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 27 82
  Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 29 83
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 27 91
  Bifidobacterium breve UCC2003 BBR_RS16820 RNA polymerase sigma factor RpoE strong 31 74
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 32 79
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 31 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 31 79
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 31 79
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 31 79
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 31 79
  Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 31 79
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 31 79
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 31 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 31 79
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 31 79
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 31 79
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 31 79
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 30 81