Homologs of PGA1_c00540 from Phaeobacter inhibens DSM 17395

putative 16S rRNA-processing protein RimM
SEED: 16S rRNA processing protein RimM
KEGG: 16S rRNA processing protein RimM

115 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phaeobacter inhibens DSM 17395 PGA1_c00540 putative 16S rRNA-processing protein RimM no data 100 100
o Dinoroseobacter shibae DFL-12 Dshi_0344 16S rRNA processing protein RimM (RefSeq) no data 63 100
o Azospirillum sp. SherDot2 MPMX19_00324 Ribosome maturation factor RimM no data 48 98
o Rhodopseudomonas palustris CGA009 TX73_001260 ribosome maturation factor RimM insig. 46 96
o Caulobacter crescentus NA1000 CCNA_03766 16S rRNA processing protein RimM no data 50 95
o Caulobacter crescentus NA1000 Δfur CCNA_03766 16S rRNA processing protein RimM cofit 50 95
o Rhodospirillum rubrum S1H Rru_A1186 16S rRNA processing protein RimM (NCBI) no data 47 100
o Azospirillum brasilense Sp245 AZOBR_RS03520 16S rRNA-processing protein RimM no data 43 98
o Xanthobacter sp. DMC5 GFF1912 Ribosome maturation factor RimM no data 44 95
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14860 ribosome maturation factor RimM no data 48 86
o Bosea sp. OAE506 ABIE41_RS11745 ribosome maturation factor RimM no data 42 98
o Magnetospirillum magneticum AMB-1 AMB_RS20545 ribosome maturation factor RimM no data 42 86
o Rhizobium sp. OAE497 ABIE40_RS18350 ribosome maturation factor RimM no data 38 95
o Sinorhizobium meliloti 1021 SMc03860 16S rRNA-processing protein RimM no data 38 97
o Agrobacterium fabrum C58 Atu2700 16S rRNA processing protein no data 41 92
  Sphingobium sp. HT1-2 GFF3806 16S rRNA processing protein RimM no data 40 78
o Pseudomonas aeruginosa MRSN321 DY961_RS14250 rimM;go_function=RNA ribosome maturation factor RimM no data 33 94
o Pseudomonas aeruginosa PA14 IKLFDK_19115 ribosome maturation factor RimM no data 33 94
o Pseudomonas aeruginosa PUPa3 DQ20_RS42875 rimM;go_function=RNA ribosome maturation factor RimM no data 33 94
o Sphingomonas koreensis DSMZ 15582 Ga0059261_4160 16S rRNA processing protein RimM no data 38 89
o Pseudomonas sp. S08-1 OH686_17730 16S rRNA processing protein RimM no data 33 94
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1717 16S rRNA processing protein RimM no data 33 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02505 ribosome maturation factor RimM no data 36 95
o Pseudomonas putida KT2440 PP_1463 Ribosome maturation factor RimM no data 34 91
o Rhodanobacter denitrificans MT42 LRK55_RS02260 ribosome maturation factor RimM no data 35 95
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_872 16S rRNA processing protein RimM no data 34 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04732 Ribosome maturation factor RimM no data 34 92
o Pseudomonas orientalis W4I3 QF045_RS25105 ribosome maturation factor RimM no data 34 92
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07440 ribosome maturation factor RimM no data 35 95
o Pseudomonas simiae WCS417 PS417_22915 16S rRNA processing protein RimM no data 33 92
o Pseudomonas fluorescens FW300-N2C3 AO356_06400 16S rRNA processing protein RimM no data 33 92
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3148 16S rRNA processing protein RimM no data 33 92
o Acidovorax sp. GW101-3H11 Ac3H11_1685 16S rRNA processing protein RimM no data 30 94
o Synechococcus elongatus PCC 7942 Synpcc7942_2259 rimM 16S rRNA-processing protein strong 35 99
  Rhodanobacter sp. FW510-T8 OKGIIK_09560 rimM ribosome maturation factor RimM no data 35 95
  Pseudomonas protegens RBAN4 FABNJH_05665 rimM ribosome maturation factor RimM no data 33 92
  Dechlorosoma suillum PS Dsui_3514 16S rRNA processing protein RimM no data 33 92
  Pseudomonas sp. SVBP6 COO64_RS04885 rimM ribosome maturation factor RimM no data 31 92
  Pseudomonas sp. BP01 JOY50_RS11680 rimM ribosome maturation factor RimM no data 34 91
  Kangiella aquimarina DSM 16071 B158DRAFT_2262 16S rRNA processing protein RimM no data 31 94
  Pseudomonas fluorescens SBW25 PFLU_RS24575 ribosome maturation factor RimM no data 33 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS24575 ribosome maturation factor RimM no data 33 92
  Pseudomonas sp. DMC3 GFF1983 Ribosome maturation factor RimM no data 33 94
  Pseudomonas fluorescens FW300-N2E3 AO353_04380 16S rRNA processing protein RimM no data 33 94
  Alteromonas macleodii MIT1002 MIT1002_01309 hypothetical protein no data 32 88
  Pseudomonas syringae pv. syringae B728a Psyr_1283 16S rRNA processing protein RimM no data 32 94
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1283 16S rRNA processing protein RimM no data 32 94
  Shewanella loihica PV-4 Shew_1064 rimM 16S rRNA-processing protein (RefSeq) no data 31 97
  Pseudomonas sp. RS175 PFR28_00328 Ribosome maturation factor RimM no data 32 92
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1339 16S rRNA processing protein RimM no data 31 100
  Pseudomonas segetis P6 ACVTMO_RS07770 rimM ribosome maturation factor RimM no data 29 94
  Vibrio cholerae E7946 ATCC 55056 CSW01_03000 ribosome maturation factor RimM no data 29 96
  Paraburkholderia sabiae LMG 24235 QEN71_RS04215 ribosome maturation factor RimM no data 31 95
  Pseudomonas stutzeri RCH2 Psest_3132 16S rRNA processing protein RimM no data 31 94
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5739 16S rRNA processing protein RimM no data 27 95
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08820 ribosome maturation factor RimM no data 33 95
  Shewanella amazonensis SB2B Sama_0890 rimM 16S rRNA-processing protein RimM (RefSeq) no data 30 94
  Methylophilus sp. DMC18 GFF2338 Ribosome maturation factor RimM no data 30 94
  Variovorax sp. OAS795 ABID97_RS08745 ribosome maturation factor RimM no data 30 95
  Lysobacter sp. OAE881 ABIE51_RS07745 ribosome maturation factor RimM no data 31 95
  Klebsiella michiganensis M5al BWI76_RS21520 ribosome maturation factor RimM no data 31 98
  Variovorax sp. SCN45 GFF3950 16S rRNA processing protein RimM no data 30 94
  Paraburkholderia graminis OAS925 ABIE53_003127 16S rRNA processing protein RimM no data 29 95
  Shewanella sp. ANA-3 Shewana3_3016 rimM 16S rRNA-processing protein RimM (RefSeq) no data 26 94
  Enterobacter asburiae PDN3 EX28DRAFT_2711 16S rRNA processing protein RimM no data 29 96
  Klebsiella pneumoniae MKP103 KDGMDA_02215 ribosome maturation factor RimM no data 30 96
  Klebsiella pneumoniae MRSN742743 KFA93_RS24650 rimM;go_component=ribosome|0005840||IEA;go_function=ribosome ribosome maturation factor RimM no data 30 96
  Desulfovibrio vulgaris Miyazaki F DvMF_2885 16S rRNA processing protein RimM (RefSeq) insig. 30 98
  Serratia liquefaciens MT49 IAI46_03925 ribosome maturation factor RimM no data 29 94
  Escherichia coli BL21 ECD_02497 ribosome maturation factor no data 29 94
  Escherichia fergusonii Becca EFB2_01284 Ribosome maturation factor RimM no data 29 94
  Escherichia coli ECOR27 NOLOHH_12855 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECOR38 HEPCGN_20300 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC100 OKFHMN_21180 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC101 MCAODC_11710 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC102 NIAGMN_18950 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC62 BNILDI_11660 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC98 JDDGAC_24845 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli ECRC99 KEDOAH_07040 rimM ribosome maturation factor RimM no data 29 94
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01098 Ribosome maturation factor RimM no data 29 94
  Escherichia coli Nissle 1917 ECOLIN_RS14740 ribosome maturation factor RimM no data 29 94
  Escherichia coli BW25113 b2608 yfjA orf, hypothetical protein (VIMSS) no data 29 94
  Burkholderia phytofirmans PsJN BPHYT_RS14760 ribosome maturation factor RimM no data 27 96
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_01525 rimM ribosome maturation factor RimM no data 29 94
  Enterobacter sp. TBS_079 MPMX20_03478 Ribosome maturation factor RimM no data 29 96
  Dickeya dianthicola ME23 DZA65_RS17375 ribosome maturation factor RimM no data 29 94
  Erwinia tracheiphila SCR3 LU632_RS15660 rimM ribosome maturation factor RimM no data 29 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04293 16S rRNA processing protein RimM no data 27 96
  Herbaspirillum seropedicae SmR1 HSERO_RS07580 ribosome maturation factor RimM no data 24 94
  Synechocystis sp000284455 PCC 6803 SGL_RS09820 ribosome maturation factor RimM strong 35 95
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3767.1 16S rRNA processing protein RimM no data 30 95
  Dickeya dianthicola 67-19 HGI48_RS16280 ribosome maturation factor RimM no data 29 94
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4171 16S rRNA processing protein RimM no data 29 95
  Shewanella oneidensis MR-1 SO1358 rimM 16S rRNA processing protein RimM (NCBI ptt file) no data 24 94
  Dickeya dadantii 3937 DDA3937_RS16170 ribosome maturation factor RimM no data 29 94
  Pectobacterium carotovorum WPP14 HER17_RS05120 ribosome maturation factor RimM no data 28 94
  Cupriavidus basilensis FW507-4G11 RR42_RS04625 16S rRNA processing protein RimM no data 25 94
  Rahnella sp. WP5 EX31_RS07720 ribosome maturation factor RimM no data 26 95
  Acinetobacter baumannii LAC-4 RR41_RS01715 ribosome maturation factor RimM no data 27 95
  Acinetobacter radioresistens SK82 MPMX26_02784 Ribosome maturation factor RimM no data 26 95
  Bifidobacterium breve UCC2003 BBR_RS12290 ribosome maturation factor RimM no data 30 99
  Erwinia amylovora T8 OLJFJH_09660 ribosome maturation factor RimM no data 26 94
  Pantoea sp. MT58 IAI47_04380 ribosome maturation factor RimM no data 27 94
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04750 rimM ribosome maturation factor RimM no data 27 94
  Marinobacter adhaerens HP15 HP15_759 16S rRNA-processing protein RimM no data 28 93
  Ralstonia sp. UNC404CL21Col ABZR87_RS09605 ribosome maturation factor RimM no data 27 94
  Mycobacterium tuberculosis H37Rv Rv2907c Probable 16S rRNA processing protein RimM no data 31 98
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20585 16S rRNA processing protein RimM no data 28 75
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS13910 ribosome maturation factor RimM no data 26 94
  Ralstonia solanacearum UW163 UW163_RS15900 ribosome maturation factor RimM no data 26 94
  Ralstonia solanacearum PSI07 RPSI07_RS19560 ribosome maturation factor RimM no data 26 93
  Ralstonia solanacearum GMI1000 RS_RS04645 ribosome maturation factor RimM no data 26 94
  Castellaniella sp019104865 MT123 ABCV34_RS05580 ribosome maturation factor RimM no data 25 94
  Desulfovibrio vulgaris Hildenborough JW710 DVU0837 rimM 16S rRNA processing protein RimM (TIGR) no data 25 98
  Fusobacterium nucleatum SB010 HUW76_02825 16S rRNA processing protein RimM no data 21 97