Homologs of GFF4658 from Xanthobacter sp. DMC5

Diaminopimelate decarboxylase
SEED: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
KEGG: ornithine decarboxylase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Xanthobacter sp. DMC5 GFF4658 Diaminopimelate decarboxylase insig. 100 100
o Azospirillum brasilense Sp245 AZOBR_RS10225 diaminopimelate decarboxylase insig. 41 92
o Azospirillum sp. SherDot2 MPMX19_01174 Diaminopimelate decarboxylase insig. 41 92
o Magnetospirillum magneticum AMB-1 AMB_RS05600 type III PLP-dependent enzyme insig. 43 89
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3753 Diaminopimelate decarboxylase no data 42 87
o Caulobacter crescentus NA1000 CCNA_00365 ornithine decarboxylase no data 41 85
o Caulobacter crescentus NA1000 Δfur CCNA_00365 ornithine decarboxylase no data 41 85
o Sphingobium sp. HT1-2 GFF100 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase (EC 4.1.1.17) no data 38 88
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14915 type III PLP-dependent enzyme no data 37 85
o Phaeobacter inhibens DSM 17395 PGA1_c11650 putative lysine/ornithine decarboxylase insig. 36 84
o Pseudomonas syringae pv. syringae B728a Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 34 88
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2547 Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2 insig. 34 88
  Bosea sp. OAE506 ABIE41_RS08335 type III PLP-dependent enzyme no data 34 87
  Xanthobacter sp. DMC5 GFF4005 Lysine/ornithine decarboxylase sig. 33 87
  Rhizobium sp. OAE497 ABIE40_RS16685 ornithine/lysine decarboxylase no data 34 85
  Azospirillum brasilense Sp245 AZOBR_RS00105 ornithine decarboxylase strong 32 86
  Rhodopseudomonas palustris CGA009 TX73_004485 type III PLP-dependent enzyme sig. 32 84
  Sinorhizobium meliloti 1021 SMc02983 ornithine, DAP, or arginine decarboxylase strong 34 85
  Azospirillum sp. SherDot2 MPMX19_00433 Lysine/ornithine decarboxylase insig. 31 86
  Agrobacterium fabrum C58 Atu3196 ornithine decarboxylase no data 32 85
  Magnetospirillum magneticum AMB-1 AMB_RS07020 type III PLP-dependent enzyme insig. 32 78
  Dinoroseobacter shibae DFL-12 Dshi_1375 Ornithine decarboxylase (RefSeq) insig. 33 85
  Pseudomonas sp. S08-1 OH686_08755 Pyridoxal 5-phosphate (PLP)-dependent ornithine decarboxylase cofit 28 87
  Phaeobacter inhibens DSM 17395 PGA1_c03800 putative lysine/ornithine decarboxylase strong 30 85
  Pseudomonas sp. RS175 PFR28_00113 Lysine/ornithine decarboxylase insig. 29 79
  Pseudomonas syringae pv. syringae B728a Psyr_4247 ornithine decarboxylase insig. 28 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4247 ornithine decarboxylase insig. 28 85
  Rhodospirillum rubrum S1H Rru_A1693 Orn/DAP/Arg decarboxylase 2 (NCBI) insig. 31 86
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1136 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) insig. 29 79
  Pseudomonas putida KT2440 PP_0864 ornithine decarboxylase sig. 29 79
  Pseudomonas fluorescens FW300-N2C3 AO356_07310 ornithine decarboxylase insig. 30 79
  Pseudomonas segetis P6 ACVTMO_RS19280 type III PLP-dependent enzyme insig. 29 79
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3334 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) sig. 30 79
  Pseudomonas aeruginosa MRSN321 DY961_RS23875 type III PLP-dependent enzyme insig. 27 87
  Pseudomonas aeruginosa PA14 IKLFDK_01485 ornithine decarboxylase insig. 27 87
  Pseudomonas sp. SVBP6 COO64_RS04020 type III PLP-dependent enzyme insig. 29 79
  Pseudomonas sp. BP01 JOY50_RS22710 type III PLP-dependent enzyme insig. 29 79
  Pseudomonas fluorescens FW300-N2E3 AO353_05445 ornithine decarboxylase insig. 29 79
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5067 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) strong 29 79
  Pseudomonas aeruginosa PUPa3 DQ20_RS56340 type III PLP-dependent enzyme insig. 27 87
  Pseudomonas simiae WCS417 PS417_04005 ornithine decarboxylase sig. 29 79
  Pseudomonas fluorescens SBW25 PFLU_RS04045 type III PLP-dependent enzyme cofit 29 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS04045 type III PLP-dependent enzyme sig. 29 79
  Pseudomonas sp. DMC3 GFF5011 Lysine/ornithine decarboxylase cofit 29 79
  Pseudomonas stutzeri RCH2 Psest_3350 Diaminopimelate decarboxylase sig. 29 78
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01006 Lysine/ornithine decarboxylase cofit 29 79
  Pseudomonas orientalis W4I3 QF045_RS06990 type III PLP-dependent enzyme insig. 29 79
  Shewanella sp. ANA-3 Shewana3_3682 ornithine decarboxylase (RefSeq) insig. 27 84
  Shewanella oneidensis MR-1 SO4136 decarboxylase, pyridoxal-dependent (NCBI ptt file) sig. 27 84
  Xanthobacter sp. DMC5 GFF3837 Diaminopimelate decarboxylase no data 30 85
  Shewanella loihica PV-4 Shew_3392 ornithine decarboxylase (RefSeq) insig. 27 84
  Shewanella amazonensis SB2B Sama_0410 ornithine decarboxylase (RefSeq) insig. 27 84
  Marinobacter adhaerens HP15 HP15_3785 ornithine decarboxylase insig. 27 80
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS17040 diaminopimelate decarboxylase insig. 27 92
  Rhodopseudomonas palustris CGA009 TX73_024635 diaminopimelate decarboxylase no data 29 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11485 diaminopimelate decarboxylase insig. 27 85
  Rhodanobacter denitrificans MT42 LRK55_RS11215 diaminopimelate decarboxylase insig. 28 85
  Vibrio cholerae E7946 ATCC 55056 CSW01_00635 diaminopimelate decarboxylase insig. 26 83
  Paraburkholderia sabiae LMG 24235 QEN71_RS28080 diaminopimelate decarboxylase strong 29 83
  Azospirillum sp. SherDot2 MPMX19_05819 Diaminopimelate decarboxylase no data 27 83
  Rhodanobacter denitrificans MT42 LRK55_RS08900 arginine decarboxylase cofit 30 56
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06990 diaminopimelate decarboxylase no data 28 83
  Ralstonia solanacearum UW163 UW163_RS06625 diaminopimelate decarboxylase no data 28 83
  Desulfovibrio vulgaris Miyazaki F DvMF_0353 diaminopimelate decarboxylase (RefSeq) sig. 28 85
  Paraburkholderia graminis OAS925 ABIE53_003749 diaminopimelate decarboxylase strong 30 83
  Rhodospirillum rubrum S1H Rru_A0396 Diaminopimelate decarboxylase (NCBI) no data 29 83
  Variovorax sp. SCN45 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 28 85
  Ralstonia solanacearum GMI1000 RS_RS14930 diaminopimelate decarboxylase no data 28 85
  Rhodanobacter sp. FW510-T8 OKGIIK_12375 lysA diaminopimelate decarboxylase insig. 28 80
  Shewanella loihica PV-4 Shew_0322 diaminopimelate decarboxylase (RefSeq) strong 26 83
  Variovorax sp. OAS795 ABID97_RS23305 diaminopimelate decarboxylase no data 27 85
  Azospirillum brasilense Sp245 AZOBR_RS16945 diaminopimelate decarboxylase no data 26 83
  Ralstonia solanacearum PSI07 RPSI07_RS10250 diaminopimelate decarboxylase no data 28 83
  Desulfovibrio vulgaris Hildenborough JW710 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) insig. 28 83
  Ralstonia sp. UNC404CL21Col ABZR87_RS02640 diaminopimelate decarboxylase strong 28 83
  Burkholderia phytofirmans PsJN BPHYT_RS17930 diaminopimelate decarboxylase insig. 29 83
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS12130 diaminopimelate decarboxylase insig. 28 79
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS06345 diaminopimelate decarboxylase cofit 24 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05606 diaminopimelate decarboxylase no data 29 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13545 diaminopimelate decarboxylase strong 26 77
  Herbaspirillum seropedicae SmR1 HSERO_RS00950 diaminopimelate decarboxylase no data 26 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05654 Diaminopimelate decarboxylase strong 26 85
  Dickeya dadantii 3937 DDA3937_RS20740 type III PLP-dependent enzyme sig. 25 83
  Alteromonas macleodii MIT1002 MIT1002_00160 Diaminopimelate decarboxylase strong 25 83
  Dickeya dianthicola ME23 DZA65_RS00505 type III PLP-dependent enzyme insig. 26 76
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) no data 26 85
  Pseudomonas fluorescens FW300-N2C3 AO356_12740 diaminopimelate decarboxylase no data 25 85
  Pseudomonas stutzeri RCH2 Psest_3764 diaminopimelate decarboxylase no data 26 85
  Rhodanobacter sp. FW510-T8 OKGIIK_15625 speA biosynthetic arginine decarboxylase no data 28 61
  Cupriavidus basilensis FW507-4G11 RR42_RS19050 diaminopimelate decarboxylase no data 26 78
  Dickeya dianthicola 67-19 HGI48_RS00505 type III PLP-dependent enzyme insig. 25 76
  Pseudomonas syringae pv. syringae B728a Psyr_0182 diaminopimelate decarboxylase no data 25 89
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0182 diaminopimelate decarboxylase no data 25 89
  Pseudomonas orientalis W4I3 QF045_RS01945 diaminopimelate decarboxylase strong 26 85
  Castellaniella sp019104865 MT123 ABCV34_RS12685 diaminopimelate decarboxylase no data 24 84
  Shewanella sp. ANA-3 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) strong 27 83
  Rhodanobacter denitrificans MT42 LRK55_RS12365 bifunctional aspartate kinase/diaminopimelate decarboxylase cofit 27 77
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS12625 bifunctional aspartate kinase/diaminopimelate decarboxylase strong 27 77
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02390 diaminopimelate decarboxylase insig. 24 85
  Pseudomonas simiae WCS417 PS417_27580 diaminopimelate decarboxylase no data 26 85