Homologs of GFF3950 from Variovorax sp. SCN45

16S rRNA processing protein RimM
SEED: 16S rRNA processing protein RimM
KEGG: 16S rRNA processing protein RimM

115 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF3950 16S rRNA processing protein RimM no data 100 100
o Variovorax sp. OAS795 ABID97_RS08745 ribosome maturation factor RimM no data 95 100
o Acidovorax sp. GW101-3H11 Ac3H11_1685 16S rRNA processing protein RimM no data 71 98
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5739 16S rRNA processing protein RimM no data 53 98
  Paraburkholderia sabiae LMG 24235 QEN71_RS04215 ribosome maturation factor RimM no data 49 95
  Burkholderia phytofirmans PsJN BPHYT_RS14760 ribosome maturation factor RimM no data 48 95
  Paraburkholderia graminis OAS925 ABIE53_003127 16S rRNA processing protein RimM no data 48 95
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04293 16S rRNA processing protein RimM no data 48 95
  Cupriavidus basilensis FW507-4G11 RR42_RS04625 16S rRNA processing protein RimM no data 44 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS13910 ribosome maturation factor RimM no data 49 95
o Ralstonia solanacearum UW163 UW163_RS15900 ribosome maturation factor RimM no data 49 95
o Ralstonia solanacearum GMI1000 RS_RS04645 ribosome maturation factor RimM no data 47 95
o Ralstonia sp. UNC404CL21Col ABZR87_RS09605 ribosome maturation factor RimM no data 46 95
o Ralstonia solanacearum PSI07 RPSI07_RS19560 ribosome maturation factor RimM no data 46 95
o Herbaspirillum seropedicae SmR1 HSERO_RS07580 ribosome maturation factor RimM no data 35 95
o Castellaniella sp019104865 MT123 ABCV34_RS05580 ribosome maturation factor RimM no data 39 95
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4171 16S rRNA processing protein RimM no data 34 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2262 16S rRNA processing protein RimM no data 37 91
o Lysobacter sp. OAE881 ABIE51_RS07745 ribosome maturation factor RimM no data 41 92
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3767.1 16S rRNA processing protein RimM no data 38 92
o Escherichia coli BL21 ECD_02497 ribosome maturation factor no data 34 97
o Escherichia fergusonii Becca EFB2_01284 Ribosome maturation factor RimM no data 34 97
o Escherichia coli ECOR27 NOLOHH_12855 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECOR38 HEPCGN_20300 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC100 OKFHMN_21180 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC101 MCAODC_11710 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC102 NIAGMN_18950 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC62 BNILDI_11660 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC98 JDDGAC_24845 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli ECRC99 KEDOAH_07040 rimM ribosome maturation factor RimM no data 34 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01098 Ribosome maturation factor RimM no data 34 97
o Escherichia coli Nissle 1917 ECOLIN_RS14740 ribosome maturation factor RimM no data 34 97
o Escherichia coli BW25113 b2608 yfjA orf, hypothetical protein (VIMSS) no data 34 97
o Methylophilus sp. DMC18 GFF2338 Ribosome maturation factor RimM no data 36 93
o Klebsiella pneumoniae MKP103 KDGMDA_02215 ribosome maturation factor RimM no data 34 97
o Klebsiella pneumoniae MRSN742743 KFA93_RS24650 rimM;go_component=ribosome|0005840||IEA;go_function=ribosome ribosome maturation factor RimM no data 34 97
o Klebsiella michiganensis M5al BWI76_RS21520 ribosome maturation factor RimM no data 34 97
o Pantoea sp. MT58 IAI47_04380 ribosome maturation factor RimM no data 33 97
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS16585 ribosome maturation factor RimM no data 33 97
o Dechlorosoma suillum PS Dsui_3514 16S rRNA processing protein RimM no data 38 92
o Pectobacterium carotovorum WPP14 HER17_RS05120 ribosome maturation factor RimM no data 35 95
o Enterobacter sp. TBS_079 MPMX20_03478 Ribosome maturation factor RimM no data 33 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08820 ribosome maturation factor RimM no data 39 91
o Enterobacter asburiae PDN3 EX28DRAFT_2711 16S rRNA processing protein RimM no data 33 95
o Erwinia amylovora T8 OLJFJH_09660 ribosome maturation factor RimM no data 35 97
o Dickeya dianthicola 67-19 HGI48_RS16280 ribosome maturation factor RimM no data 34 95
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_01525 rimM ribosome maturation factor RimM no data 33 97
o Shewanella amazonensis SB2B Sama_0890 rimM 16S rRNA-processing protein RimM (RefSeq) no data 34 91
o Dickeya dadantii 3937 DDA3937_RS16170 ribosome maturation factor RimM no data 34 95
o Dickeya dianthicola ME23 DZA65_RS17375 ribosome maturation factor RimM no data 34 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02505 ribosome maturation factor RimM no data 38 91
o Serratia liquefaciens MT49 IAI46_03925 ribosome maturation factor RimM no data 33 95
o Erwinia tracheiphila SCR3 LU632_RS15660 rimM ribosome maturation factor RimM no data 33 97
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07440 ribosome maturation factor RimM no data 38 91
o Acinetobacter radioresistens SK82 MPMX26_02784 Ribosome maturation factor RimM no data 32 100
o Acinetobacter baumannii LAC-4 RR41_RS01715 ribosome maturation factor RimM no data 32 100
o Rahnella sp. WP5 EX31_RS07720 ribosome maturation factor RimM no data 31 95
o Shewanella loihica PV-4 Shew_1064 rimM 16S rRNA-processing protein (RefSeq) no data 32 91
o Rhodanobacter denitrificans MT42 LRK55_RS02260 ribosome maturation factor RimM no data 38 91
o Rhodanobacter sp. FW510-T8 OKGIIK_09560 rimM ribosome maturation factor RimM no data 37 91
o Shewanella oneidensis MR-1 SO1358 rimM 16S rRNA processing protein RimM (NCBI ptt file) no data 32 91
o Shewanella sp. ANA-3 Shewana3_3016 rimM 16S rRNA-processing protein RimM (RefSeq) no data 32 91
o Alteromonas macleodii MIT1002 MIT1002_01309 hypothetical protein no data 32 95
  Vibrio cholerae E7946 ATCC 55056 CSW01_03000 ribosome maturation factor RimM no data 29 97
  Pseudomonas aeruginosa PA14 IKLFDK_19115 ribosome maturation factor RimM no data 30 96
  Marinobacter adhaerens HP15 HP15_759 16S rRNA-processing protein RimM no data 32 91
  Pseudomonas stutzeri RCH2 Psest_3132 16S rRNA processing protein RimM no data 31 93
  Pseudomonas sp. RS175 PFR28_00328 Ribosome maturation factor RimM no data 31 93
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04732 Ribosome maturation factor RimM no data 32 93
  Pseudomonas orientalis W4I3 QF045_RS25105 ribosome maturation factor RimM no data 32 93
  Pseudomonas aeruginosa MRSN321 DY961_RS14250 rimM;go_function=RNA ribosome maturation factor RimM no data 30 93
  Pseudomonas aeruginosa PUPa3 DQ20_RS42875 rimM;go_function=RNA ribosome maturation factor RimM no data 30 93
  Pseudomonas fluorescens FW300-N2C3 AO356_06400 16S rRNA processing protein RimM no data 31 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3148 16S rRNA processing protein RimM no data 31 93
  Pseudomonas putida KT2440 PP_1463 Ribosome maturation factor RimM no data 31 93
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_872 16S rRNA processing protein RimM no data 32 93
  Pseudomonas sp. SVBP6 COO64_RS04885 rimM ribosome maturation factor RimM no data 31 93
  Pseudomonas simiae WCS417 PS417_22915 16S rRNA processing protein RimM no data 31 93
  Pseudomonas fluorescens SBW25 PFLU_RS24575 ribosome maturation factor RimM no data 31 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS24575 ribosome maturation factor RimM no data 31 93
  Pseudomonas syringae pv. syringae B728a Psyr_1283 16S rRNA processing protein RimM no data 31 93
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1283 16S rRNA processing protein RimM no data 31 93
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1717 16S rRNA processing protein RimM no data 31 93
  Pseudomonas sp. DMC3 GFF1983 Ribosome maturation factor RimM no data 32 98
  Pseudomonas sp. BP01 JOY50_RS11680 rimM ribosome maturation factor RimM no data 30 93
  Pseudomonas fluorescens FW300-N2E3 AO353_04380 16S rRNA processing protein RimM no data 31 93
  Pseudomonas segetis P6 ACVTMO_RS07770 rimM ribosome maturation factor RimM no data 29 93
  Pseudomonas sp. S08-1 OH686_17730 16S rRNA processing protein RimM no data 28 93
  Phaeobacter inhibens DSM 17395 PGA1_c00540 putative 16S rRNA-processing protein RimM no data 30 89
  Xanthobacter sp. DMC5 GFF1912 Ribosome maturation factor RimM no data 34 90
  Dinoroseobacter shibae DFL-12 Dshi_0344 16S rRNA processing protein RimM (RefSeq) no data 32 90
  Caulobacter crescentus NA1000 CCNA_03766 16S rRNA processing protein RimM no data 31 90
  Caulobacter crescentus NA1000 Δfur CCNA_03766 16S rRNA processing protein RimM cofit 31 90
  Bosea sp. OAE506 ABIE41_RS11745 ribosome maturation factor RimM no data 31 88
  Synechococcus elongatus PCC 7942 Synpcc7942_2259 rimM 16S rRNA-processing protein strong 32 84
  Rhizobium sp. OAE497 ABIE40_RS18350 ribosome maturation factor RimM no data 31 89
  Azospirillum sp. SherDot2 MPMX19_00324 Ribosome maturation factor RimM no data 31 90
  Magnetospirillum magneticum AMB-1 AMB_RS20545 ribosome maturation factor RimM no data 34 70
  Azospirillum brasilense Sp245 AZOBR_RS03520 16S rRNA-processing protein RimM no data 30 89
  Desulfovibrio vulgaris Miyazaki F DvMF_2885 16S rRNA processing protein RimM (RefSeq) insig. 30 92
  Rhodopseudomonas palustris CGA009 TX73_001260 ribosome maturation factor RimM insig. 30 88
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1339 16S rRNA processing protein RimM no data 26 86
  Rhodospirillum rubrum S1H Rru_A1186 16S rRNA processing protein RimM (NCBI) no data 29 87
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4160 16S rRNA processing protein RimM no data 39 38
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14860 ribosome maturation factor RimM no data 30 66
  Sphingobium sp. HT1-2 GFF3806 16S rRNA processing protein RimM no data 34 61
  Synechocystis sp000284455 PCC 6803 SGL_RS09820 ribosome maturation factor RimM strong 29 85
  Fusobacterium nucleatum SB010 HUW76_02825 16S rRNA processing protein RimM no data 25 88
  Desulfovibrio vulgaris Hildenborough JW710 DVU0837 rimM 16S rRNA processing protein RimM (TIGR) no data 30 87
  Agrobacterium fabrum C58 Atu2700 16S rRNA processing protein no data 30 88
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20585 16S rRNA processing protein RimM no data 27 90
  Mycobacterium tuberculosis H37Rv Rv2907c Probable 16S rRNA processing protein RimM no data 28 89
  Bifidobacterium breve UCC2003 BBR_RS12290 ribosome maturation factor RimM no data 26 90
  Sinorhizobium meliloti 1021 SMc03860 16S rRNA-processing protein RimM no data 29 87
  Cellulophaga baltica 18 M666_RS07005 ribosome maturation factor RimM no data 19 92