| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| | Sphingobium sp. HT1-2 | GFF3935 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 100 | 100 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_1609 | | probable rRNA maturation factor YbeY | no data | 61 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_02513 | | Endoribonuclease YbeY | no data | 55 | 71 |
| o | Pantoea sp. MT58 | IAI47_13955 | | rRNA maturation RNase YbeY | no data | 47 | 86 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS14065 | ybeY | rRNA maturation RNase YbeY | no data | 51 | 70 |
| | Xanthobacter sp. DMC5 | GFF3721 | | Endoribonuclease YbeY | no data | 55 | 71 |
| | Dickeya dadantii 3937 | DDA3937_RS06240 | | rRNA maturation RNase YbeY | no data | 49 | 70 |
| | Rhodospirillum rubrum S1H | Rru_A3772 | | Protein of unknown function UPF0054 (NCBI) | no data | 51 | 86 |
| | Dickeya dianthicola ME23 | DZA65_RS06630 | | rRNA maturation RNase YbeY | no data | 48 | 70 |
| o | Rhizobium sp. OAE497 | ABIE40_RS01695 | | rRNA maturation RNase YbeY | no data | 42 | 98 |
| | Dickeya dianthicola 67-19 | HGI48_RS06285 | | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Caulobacter crescentus NA1000 | CCNA_00052 | | metal-dependent hydrolase/metalloproteinase | no data | 51 | 73 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00052 | | metal-dependent hydrolase/metalloproteinase | no data | 51 | 73 |
| o | Phaeobacter inhibens DSM 17395 | PGA1_c04750 | | metalloprotein, YbeY/UPF0054 family | no data | 43 | 90 |
| o | Dinoroseobacter shibae DFL-12 | Dshi_1015 | | protein of unknown function UPF0054 (RefSeq) | no data | 42 | 96 |
| | Pectobacterium carotovorum WPP14 | HER17_RS15175 | | rRNA maturation RNase YbeY | no data | 46 | 74 |
| o | Klebsiella pneumoniae MKP103 | KDGMDA_16485 | | rRNA maturation RNase YbeY | no data | 44 | 86 |
| o | Klebsiella pneumoniae MRSN742743 | KFA93_RS02145 | ybeY;go_function=RNA | rRNA maturation RNase YbeY | no data | 44 | 86 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2312 | | probable rRNA maturation factor YbeY | no data | 47 | 70 |
| | Enterobacter sp. TBS_079 | MPMX20_01309 | | Endoribonuclease YbeY | no data | 47 | 70 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF4576 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 47 | 70 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2710 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 48 | 72 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05080 | | Endoribonuclease YbeY | no data | 48 | 72 |
| | Alteromonas macleodii MIT1002 | MIT1002_01478 | | Endoribonuclease YbeY | no data | 47 | 75 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_04905 | | endoribonuclease YbeY | no data | 40 | 96 |
| | Pseudomonas sp. SVBP6 | COO64_RS15520 | ybeY | rRNA maturation RNase YbeY | no data | 49 | 72 |
| | Shewanella loihica PV-4 | Shew_2925 | | putative metalloprotease (RefSeq) | no data | 46 | 72 |
| | Erwinia amylovora T8 | OLJFJH_17155 | | rRNA maturation RNase YbeY | no data | 45 | 75 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_06385 | | rRNA maturation factor | no data | 48 | 72 |
| | Pseudomonas sp. DMC3 | GFF3898 | | Endoribonuclease YbeY | no data | 46 | 77 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_02370 | ybeY | rRNA maturation RNase YbeY | no data | 46 | 70 |
| | Erwinia tracheiphila SCR3 | LU632_RS16315 | ybeY | rRNA maturation RNase YbeY | no data | 46 | 70 |
| | Pseudomonas protegens RBAN4 | FABNJH_27440 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 72 |
| | Sinorhizobium meliloti 1021 | SMc01113 | | hypothetical protein | no data | 48 | 72 |
| | Bosea sp. OAE506 | ABIE41_RS04505 | | rRNA maturation RNase YbeY | no data | 48 | 72 |
| | Serratia liquefaciens MT49 | IAI46_06010 | | rRNA maturation RNase YbeY | no data | 45 | 70 |
| | Acinetobacter radioresistens SK82 | MPMX26_02669 | | Endoribonuclease YbeY | no data | 48 | 72 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS26565 | | rRNA maturation RNase YbeY | insig. | 47 | 73 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS26565 | | rRNA maturation RNase YbeY | insig. | 47 | 73 |
| o | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS14710 | | rRNA maturation RNase YbeY | no data | 47 | 96 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2221.1 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 43 | 87 |
| | Pseudomonas simiae WCS417 | PS417_24635 | | rRNA maturation factor | no data | 47 | 72 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS22595 | | endoribonuclease YbeY | no data | 51 | 73 |
| | Pseudomonas orientalis W4I3 | QF045_RS26920 | | rRNA maturation RNase YbeY | no data | 46 | 73 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0097 | | metalloprotein, YbeY/UPF0054 family | no data | 43 | 73 |
| o | Lysobacter sp. OAE881 | ABIE51_RS15505 | | rRNA maturation RNase YbeY | no data | 41 | 86 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS12940 | ybeY;go_function=RNA | rRNA maturation RNase YbeY | no data | 47 | 71 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_20550 | | rRNA maturation RNase YbeY | no data | 47 | 71 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS48265 | ybeY;go_function=RNA | rRNA maturation RNase YbeY | no data | 47 | 71 |
| | Pseudomonas segetis P6 | ACVTMO_RS05300 | ybeY | rRNA maturation RNase YbeY | no data | 43 | 72 |
| | Escherichia coli ECRC62 | BNILDI_21620 | ybeY | rRNA maturation RNase YbeY | no data | 49 | 70 |
| | Escherichia coli BL21 | ECD_00627 | | ssRNA-specific endoribonuclease; 16S rRNA 3 | no data | 49 | 70 |
| | Escherichia coli ECOR27 | NOLOHH_23615 | ybeY | rRNA maturation RNase YbeY | no data | 49 | 70 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_03053 | | Endoribonuclease YbeY | no data | 49 | 70 |
| | Escherichia coli BW25113 | b0659 | ybeY | hypothetical protein (NCBI) | no data | 49 | 70 |
| | Escherichia coli ECOR38 | HEPCGN_00995 | ybeY | rRNA maturation RNase YbeY | no data | 49 | 70 |
| | Methylophilus sp. DMC18 | GFF2723 | | Endoribonuclease YbeY | no data | 41 | 78 |
| | Escherichia fergusonii Becca | EFB2_03440 | | Endoribonuclease YbeY | no data | 48 | 70 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS03545 | | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Escherichia coli ECRC100 | OKFHMN_07235 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Escherichia coli ECRC101 | MCAODC_26450 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Escherichia coli ECRC102 | NIAGMN_05290 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Escherichia coli ECRC98 | JDDGAC_10880 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Escherichia coli ECRC99 | KEDOAH_20735 | ybeY | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Rhodopseudomonas palustris CGA009 | TX73_002315 | | rRNA maturation RNase YbeY | strong | 47 | 73 |
| | Pseudomonas sp. BP01 | JOY50_RS21715 | ybeY | rRNA maturation RNase YbeY | no data | 50 | 72 |
| | Klebsiella michiganensis M5al | BWI76_RS08125 | | rRNA maturation RNase YbeY | no data | 48 | 70 |
| | Shewanella amazonensis SB2B | Sama_2577 | | putative metalloprotease (RefSeq) | no data | 48 | 72 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1378 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 48 | 72 |
| | Agrobacterium fabrum C58 | Atu0358 | | hypothetical protein | no data | 48 | 73 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4347 | | Protein of unknown function UPF0054 | no data | 48 | 72 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4347 | | Protein of unknown function UPF0054 | no data | 48 | 72 |
| | Pseudomonas putida KT2440 | PP_4788 | | Endoribonuclease YbeY | no data | 49 | 72 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS15335 | | rRNA maturation RNase YbeY | no data | 41 | 72 |
| | Pseudomonas sp. RS175 | PFR28_03850 | | Endoribonuclease YbeY | no data | 47 | 77 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_02960 | ybeY | rRNA maturation RNase YbeY | no data | 49 | 70 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_4681 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 40 | 86 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS13715 | | rRNA maturation RNase YbeY | no data | 50 | 70 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS09925 | | rRNA maturation RNase YbeY | no data | 49 | 70 |
| | Rahnella sp. WP5 | EX31_RS23190 | | rRNA maturation RNase YbeY | no data | 44 | 70 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS21390 | | rRNA maturation RNase YbeY | no data | 43 | 72 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS13455 | | rRNA maturation RNase YbeY | no data | 48 | 75 |
| | Shewanella sp. ANA-3 | Shewana3_1006 | | putative metalloprotease (RefSeq) | no data | 44 | 72 |
| o | Pseudomonas stutzeri RCH2 | Psest_0530 | | metalloprotein, YbeY/UPF0054 family | no data | 43 | 82 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS11815 | | rRNA maturation RNAse YbeY | no data | 41 | 72 |
| | Ralstonia solanacearum UW163 | UW163_RS01770 | | rRNA maturation RNAse YbeY | no data | 41 | 72 |
| | Ralstonia solanacearum GMI1000 | RS_RS02635 | | rRNA maturation RNase YbeY | no data | 43 | 72 |
| | Variovorax sp. SCN45 | GFF2071 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 41 | 71 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS14860 | | rRNA maturation RNase YbeY | no data | 50 | 70 |
| | Shewanella oneidensis MR-1 | SO1179 | | conserved hypothetical protein TIGR00043 (NCBI ptt file) | no data | 44 | 72 |
| | Variovorax sp. OAS795 | ABID97_RS24930 | | rRNA maturation RNase YbeY | no data | 41 | 71 |
| | Dechlorosoma suillum PS | Dsui_1196 | | metalloprotein, YbeY/UPF0054 family | no data | 47 | 70 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5016 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 45 | 76 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_15400 | | rRNA maturation factor | no data | 45 | 76 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS07770 | | rRNA maturation RNase YbeY | no data | 41 | 72 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF1669 | | Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly | no data | 41 | 71 |
| | Pseudomonas sp. S08-1 | OH686_09225 | | probable rRNA maturation factor YbeY | no data | 45 | 71 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS16545 | | endoribonuclease YbeY | no data | 45 | 70 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS02185 | | rRNA maturation RNase YbeY | no data | 41 | 91 |
| | Paraburkholderia graminis OAS925 | ABIE53_003481 | | putative rRNA maturation factor | no data | 45 | 70 |
| | Acinetobacter baumannii LAC-4 | RR41_RS02440 | | rRNA maturation RNase YbeY | no data | 48 | 72 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_04241 | | probable rRNA maturation factor | no data | 44 | 70 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS03605 | | 16S rRNA maturation RNase YbeY | no data | 43 | 72 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS13870 | | rRNA maturation RNase YbeY | strong | 33 | 70 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0402 | | hypothetical protein | insig. | 37 | 66 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS02845 | | 16S rRNA maturation RNase YbeY | no data | 38 | 96 |
| | Fusobacterium nucleatum SB010 | HUW76_04575 | | rRNA maturation RNase YbeY | no data | 30 | 70 |
| | Bifidobacterium breve UCC2003 | BBR_RS15165 | | rRNA maturation RNase YbeY | no data | 34 | 69 |
| | Mycobacterium tuberculosis H37Rv | Rv2367c | | Conserved hypothetical protein | insig. | 38 | 65 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_00893 | | translation metalloprotein YbeY | no data | 29 | 66 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3283 | | conserved hypothetical protein with conserved domain (NCBI ptt file) | no data | 28 | 66 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1883 | | conserved hypothetical protein (TIGR) | no data | 32 | 56 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11550 | | rRNA maturation RNase YbeY | no data | 26 | 68 |
| | Marinobacter adhaerens HP15 | HP15_2469 | | predicted metal-dependent hydrolase | insig. | 56 | 20 |
| | Marinobacter adhaerens HP15 | HP15_2468 | | metalloprotease YbeY | no data | 38 | 41 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_17280 | | rRNA maturation RNase YbeY | no data | 25 | 68 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS02110 | | rRNA maturation RNase YbeY | no data | 26 | 65 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS05390 | | rRNA maturation RNase YbeY | no data | 24 | 68 |