Homologs of GFF3787 from Sphingobium sp. HT1-2

RidA/YER057c/UK114 superfamily protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3787 RidA/YER057c/UK114 superfamily protein cofit 100 100
o Cupriavidus basilensis FW507-4G11 RR42_RS16710 endoribonuclease L-PSP insig. 48 81
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01145 Putative aminoacrylate peracid reductase RutC cofit 39 77
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_931 Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) insig. 39 79
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 38 81
  Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 35 75
o Pseudomonas sp. SVBP6 COO64_RS09615 RidA family protein insig. 39 80
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 35 81
  Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 34 75
  Pseudomonas aeruginosa PA14 IKLFDK_15890 enamine deaminase RidA insig. 40 76
  Fusobacterium nucleatum SB010 HUW76_10065 RidA family protein strong 38 78
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 35 75
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17590 RidA family protein sig. 31 90
  Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 35 75
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS03950 RidA family protein insig. 36 87
  Marinobacter adhaerens HP15 HP15_306 YjgF-like protein strong 30 74
  Variovorax sp. OAS795 ABID97_RS22895 RidA family protein insig. 34 92
  Variovorax sp. SCN45 GFF6707 RidA/YER057c/UK114 superfamily protein insig. 37 75
  Synechocystis sp000284455 PCC 6803 SGL_RS16325 RidA family protein strong 33 81
  Pseudomonas sp. BP01 JOY50_RS25415 RidA family protein insig. 37 76
  Ralstonia solanacearum GMI1000 RS_RS23530 RidA family protein no data 31 82
  Ralstonia solanacearum GMI1000 RS_RS23660 RidA family protein no data 31 82
  Cellulophaga baltica 18 M666_RS12150 RidA family protein insig. 28 75
  Cupriavidus basilensis FW507-4G11 RR42_RS30085 hypothetical protein insig. 34 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS09865 RidA family protein insig. 35 74
  Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 33 74
  Cupriavidus basilensis FW507-4G11 RR42_RS34135 hypothetical protein insig. 32 82
  Pseudomonas putida KT2440 PP_2247 putative Endoribonuclease insig. 36 76
  Dinoroseobacter shibae DFL-12 Dshi_0720 Endoribonuclease L-PSP (RefSeq) sig. 36 75
  Synechococcus elongatus PCC 7942 Synpcc7942_0972 YjgF-like protein strong 34 81
  Cupriavidus basilensis FW507-4G11 RR42_RS28840 hypothetical protein insig. 33 78
  Kangiella aquimarina DSM 16071 B158DRAFT_0573 endoribonuclease L-PSP, putative sig. 28 76
  Paraburkholderia sabiae LMG 24235 QEN71_RS41190 RidA family protein no data 30 88
  Pseudomonas syringae pv. syringae B728a Psyr_0208 endoribonuclease L-PSP strong 31 74
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0208 endoribonuclease L-PSP strong 31 74
  Ralstonia solanacearum GMI1000 RS_RS23155 RidA family protein insig. 33 77
  Herbaspirillum seropedicae SmR1 HSERO_RS08735 hypothetical protein insig. 35 76
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1327 endoribonuclease L-PSP, putative sig. 29 75
  Pseudomonas sp. BP01 JOY50_RS08980 RidA family protein cofit 32 74
  Pseudomonas fluorescens SBW25 PFLU_RS29515 RidA family protein strong 32 74
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29515 RidA family protein strong 32 74
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00035 2-iminobutanoate/2-iminopropanoate deaminase strong 32 74
  Pseudomonas sp. RS175 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase strong 32 74
  Pseudomonas putida KT2440 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase strong 32 74
  Pseudomonas simiae WCS417 PS417_27835 endoribonuclease strong 32 74
  Dechlorosoma suillum PS Dsui_0312 endoribonuclease L-PSP, putative no data 32 74
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22825 reactive intermediate/imine deaminase strong 28 75
  Ralstonia solanacearum PSI07 RPSI07_RS05740 RidA family protein sig. 33 84
  Pseudomonas fluorescens FW300-N2E3 AO353_24440 reactive intermediate/imine deaminase insig. 29 77
  Paraburkholderia graminis OAS925 ABIE53_004706 2-iminobutanoate/2-iminopropanoate deaminase sig. 32 75
  Variovorax sp. OAS795 ABID97_RS26145 RidA family protein insig. 30 75
  Pseudomonas sp. DMC3 GFF420 2-iminobutanoate/2-iminopropanoate deaminase strong 31 74
  Pseudomonas fluorescens FW300-N2C3 AO356_12475 reactive intermediate/imine deaminase strong 31 74
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 31 74
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 27 86
  Pseudomonas segetis P6 MPMX49_00037 2-iminobutanoate/2-iminopropanoate deaminase strong 33 74
  Pseudomonas sp. S08-1 OH686_13545 RidA/YER057c/UK114 superfamily protein strong 29 88
  Herbaspirillum seropedicae SmR1 HSERO_RS06570 endoribonuclease L-PSP insig. 33 79
  Pseudomonas sp. SVBP6 COO64_RS01560 RidA family protein strong 30 74
  Pseudomonas fluorescens GW456-L13 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 74
  Pseudomonas fluorescens FW300-N2E3 AO353_09285 reactive intermediate/imine deaminase strong 30 74
  Paraburkholderia graminis OAS925 ABIE53_000758 reactive intermediate/imine deaminase strong 32 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 74
  Variovorax sp. OAS795 ABID97_RS21535 RidA family protein no data 30 74
  Burkholderia phytofirmans PsJN BPHYT_RS03130 hypothetical protein insig. 32 76
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 29 82
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03549 reactive intermediate/imine deaminase insig. 34 75
  Methylophilus sp. DMC18 GFF1301 2-iminobutanoate/2-iminopropanoate deaminase cofit 29 77
  Cupriavidus basilensis FW507-4G11 RR42_RS24575 endoribonuclease L-PSP insig. 36 74
  Shewanella sp. ANA-3 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) cofit 29 72
  Desulfovibrio vulgaris Hildenborough JW710 DVU2203 endoribonuclease, L-PSP family (TIGR) sig. 30 75
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01890 reactive intermediate/imine deaminase insig. 32 76
  Enterobacter sp. TBS_079 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase sig. 28 81
  Bifidobacterium breve UCC2003 BBR_RS12070 endoribonuclease L-PSP sig. 28 83
  Shewanella oneidensis MR-1 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) strong 28 72
  Pseudomonas stutzeri RCH2 Psest_3002 Putative translation initiation inhibitor, yjgF family insig. 34 74
  Pseudomonas fluorescens SBW25 PFLU_RS13590 RidA family protein insig. 32 76
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13590 RidA family protein insig. 32 76
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_179 Endoribonuclease L-PSP no data 31 77
  Shewanella loihica PV-4 Shew_3500 putative endoribonuclease L-PSP (RefSeq) strong 30 66
  Enterobacter asburiae PDN3 EX28DRAFT_3444 reactive intermediate/imine deaminase insig. 30 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01079 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family insig. 29 82
  Acinetobacter baumannii LAC-4 RR41_RS01650 RidA family protein sig. 30 72
  Pseudomonas simiae WCS417 PS417_12920 endoribonuclease insig. 30 76
  Escherichia coli BL21 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification strong 28 81
  Escherichia fergusonii Becca EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase sig. 28 81
  Escherichia coli ECOR27 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase insig. 28 81
  Escherichia coli ECOR38 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase insig. 28 81
  Escherichia coli ECRC100 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 28 81
  Escherichia coli ECRC101 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase strong 28 81
  Escherichia coli ECRC102 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase strong 28 81
  Escherichia coli ECRC62 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 28 81
  Escherichia coli ECRC98 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase cofit 28 81
  Escherichia coli ECRC99 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase no data 28 81
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase insig. 28 81
  Escherichia coli Nissle 1917 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase insig. 28 81
  Escherichia coli BW25113 b4243 yjgF orf, hypothetical protein (VIMSS) strong 28 81
  Klebsiella pneumoniae MKP103 KDGMDA_11455 2-iminobutanoate/2-iminopropanoate deaminase insig. 28 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS38550 RidA family protein insig. 28 89
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2049 Bona fide RidA/YjgF/TdcF/RutC subgroup no data 29 77