Homologs of PS417_00810 from Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: RNA polymerase sigma-E factor
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 98 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 98 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4018 RNA polymerase sigma-E factor insig. 88 100
o Pseudomonas fluorescens FW300-N2C3 AO356_10740 RNA polymerase subunit sigma insig. 88 97
o Pseudomonas sp. RS175 PFR28_04750 RNA polymerase sigma-H factor insig. 85 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1738 RNA polymerase sigma-54 factor RpoN insig. 82 95
o Pseudomonas sp. S08-1 OH686_04120 RNA polymerase sigma factor RpoE insig. 67 93
  Kangiella aquimarina DSM 16071 B158DRAFT_0139 RNA polymerase sigma factor, sigma-70 family insig. 43 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07040 RNA polymerase sigma factor insig. 44 93
o Acidovorax sp. GW101-3H11 Ac3H11_916 RNA polymerase sigma-70 factor insig. 42 92
o Lysobacter sp. OAE881 ABIE51_RS13770 RNA polymerase sigma factor insig. 45 93
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS01445 sigma-70 family RNA polymerase sigma factor insig. 43 94
o Shewanella loihica PV-4 Shew_1231 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 37 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3517 RNA polymerase sigma-70 factor insig. 43 93
o Shewanella sp. ANA-3 Shewana3_3152 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) cofit 37 91
o Shewanella amazonensis SB2B Sama_1068 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 38 95
o Shewanella oneidensis MR-1 SO3551 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 38 91
o Variovorax sp. SCN45 GFF2126 hypothetical protein no data 41 94
o Variovorax sp. OAS795 ABID97_RS24815 sigma-70 family RNA polymerase sigma factor insig. 40 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1512.1 RNA polymerase sigma-70 factor insig. 41 81
o Dinoroseobacter shibae DFL-12 Dshi_2428 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 36 92
  Cupriavidus basilensis FW507-4G11 RR42_RS05730 DNA-directed RNA polymerase sigma-70 factor insig. 39 85
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 32 94
o Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 35 94
  Dinoroseobacter shibae DFL-12 Dshi_3423 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 91
o Alteromonas macleodii MIT1002 MIT1002_01916 RNA polymerase sigma factor CarQ insig. 33 92
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 32 92
o Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 34 94
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 33 94
o Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 37 93
  Alteromonas macleodii MIT1002 MIT1002_00882 Sigma-W factor insig. 30 91
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 35 96
  Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 36 96
  Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 31 94
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 29 93
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 30 92
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 36 84
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 35 91
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 35 91
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 92
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 92
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04360 sigma-70 family RNA polymerase sigma factor insig. 27 93
o Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 38 96
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0865 RNA polymerase sigma factor, sigma-70 family insig. 28 94
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 35 97
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 33 96
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 35 86
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 33 94
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 32 97
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 35 95
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 29 92
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 29 93
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 29 92
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07135 RNA polymerase sigma factor insig. 27 87
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 28 95
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 34 93
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 33 96
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 33 94
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 34 98
o Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 36 94
  Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 30 93
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 30 93
  Herbaspirillum seropedicae SmR1 HSERO_RS15420 RNA polymerase subunit sigma-24 insig. 34 83
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 31 91
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 29 93
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 37 91
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 37 91
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 36 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01799 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 85
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 31 93
  Pseudomonas sp. S08-1 OH686_11525 hypothetical protein cofit 31 89
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 30 93
  Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 29 95
  Bacteroides thetaiotaomicron VPI-5482 BT3190 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 30 95
  Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 29 91
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 29 90
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05410 RNA polymerase sigma factor strong 30 79
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 32 93
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 28 90
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 34 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 32 89
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 28 90
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 36 89
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 30 84
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 27 92
o Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 35 86
  Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 32 93
  Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 32 93
  Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 33 91
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 34 92
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 32 92
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 27 92
  Bifidobacterium breve UCC2003 BBR_RS15930 RNA polymerase sigma factor insig. 35 91
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 33 91
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 32 86
  Cupriavidus basilensis FW507-4G11 RR42_RS16520 RNA polymerase sigma factor insig. 32 85
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 28 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 37 72