Homologs of CSW01_12980 from Vibrio cholerae E7946 ATCC 55056

ATP-dependent RNA helicase DbpA
SEED: ATP-dependent 23S rRNA helicase DbpA
KEGG: ATP-independent RNA helicase DbpA

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_12980 ATP-dependent RNA helicase DbpA insig. 100 100
o Shewanella amazonensis SB2B Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) insig. 66 99
o Shewanella sp. ANA-3 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) insig. 65 99
o Shewanella oneidensis MR-1 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) insig. 64 99
o Shewanella loihica PV-4 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) insig. 61 100
o Kangiella aquimarina DSM 16071 B158DRAFT_2047 ATP-dependent RNA helicase DbpA (EC 5.99.1.-) insig. 58 99
o Serratia liquefaciens MT49 IAI46_14765 ATP-dependent RNA helicase DbpA insig. 55 100
o Pseudomonas fluorescens FW300-N2E3 AO353_07850 ATP-dependent RNA helicase strong 55 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA insig. 56 99
o Pseudomonas aeruginosa PA14 IKLFDK_23155 ATP-dependent RNA helicase DbpA insig. 55 100
o Pseudomonas aeruginosa MRSN321 DY961_RS22265 dbpA;go_function=nucleic ATP-dependent RNA helicase DbpA insig. 55 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS37055 dbpA;go_function=nucleic ATP-dependent RNA helicase DbpA sig. 55 100
o Pseudomonas segetis P6 ACVTMO_RS03355 dbpA ATP-dependent RNA helicase DbpA insig. 55 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA strong 55 99
o Pseudomonas sp. RS175 PFR28_04172 ATP-dependent RNA helicase DbpA sig. 56 99
o Pseudomonas fluorescens FW300-N2C3 AO356_13770 ATP-dependent RNA helicase strong 55 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA strong 55 99
o Pseudomonas sp. DMC3 GFF142 ATP-dependent RNA helicase DbpA insig. 55 99
o Pseudomonas syringae pv. syringae B728a Psyr_0516 ATP-dependent RNA helicase DbpA insig. 55 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0516 ATP-dependent RNA helicase DbpA insig. 55 99
o Pseudomonas stutzeri RCH2 Psest_0344 Superfamily II DNA and RNA helicases insig. 54 100
o Ralstonia solanacearum GMI1000 RS_RS03120 ATP-dependent RNA helicase DbpA insig. 55 100
o Pectobacterium carotovorum WPP14 HER17_RS06775 ATP-dependent RNA helicase DbpA insig. 54 100
o Ralstonia solanacearum PSI07 RPSI07_RS20905 ATP-dependent RNA helicase DbpA insig. 54 100
o Pseudomonas fluorescens SBW25 PFLU_RS28020 ATP-dependent RNA helicase DbpA insig. 54 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS28020 ATP-dependent RNA helicase DbpA strong 54 99
o Dickeya dadantii 3937 DDA3937_RS11045 ATP-dependent RNA helicase DbpA insig. 55 99
o Pseudomonas simiae WCS417 PS417_26370 RNA helicase strong 54 99
o Cupriavidus basilensis FW507-4G11 RR42_RS00295 DEAD/DEAH box helicase sig. 55 99
o Pseudomonas putida KT2440 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA insig. 54 99
o Pseudomonas sp. SVBP6 COO64_RS17620 dbpA ATP-dependent RNA helicase DbpA insig. 55 97
o Pseudomonas lactucae CFBP13502 GEMAOFIL_05400 ATP-dependent RNA helicase DbpA cofit 54 99
o Escherichia fergusonii Becca EFB2_02584 ATP-dependent RNA helicase DbpA insig. 55 99
o Escherichia coli Nissle 1917 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA insig. 55 99
o Erwinia amylovora T8 OLJFJH_13775 ATP-dependent RNA helicase DbpA insig. 54 99
o Pseudomonas orientalis W4I3 QF045_RS00755 ATP-dependent RNA helicase DbpA cofit 55 97
o Escherichia coli ECOR38 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA insig. 55 99
o Dickeya dianthicola 67-19 HGI48_RS11065 ATP-dependent RNA helicase DbpA insig. 55 99
o Escherichia coli ECOR27 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA insig. 54 99
o Dickeya dianthicola ME23 DZA65_RS11470 ATP-dependent RNA helicase DbpA insig. 55 99
o Escherichia coli BL21 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA insig. 54 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02338 ATP-dependent RNA helicase DbpA insig. 54 99
o Escherichia coli BW25113 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) insig. 54 99
o Pseudomonas sp. BP01 JOY50_RS09935 dbpA ATP-dependent RNA helicase DbpA insig. 54 97
o Klebsiella pneumoniae MKP103 KDGMDA_20600 ATP-dependent RNA helicase DbpA insig. 53 99
o Escherichia coli ECRC62 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA insig. 54 99
o Rahnella sp. WP5 EX31_RS24740 ATP-dependent RNA helicase DbpA insig. 54 100
o Pseudomonas sp. S08-1 OH686_14770 ATP-dependent 23S rRNA helicase DbpA insig. 53 99
o Escherichia coli ECRC100 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA cofit 54 99
o Escherichia coli ECRC101 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA insig. 54 99
o Escherichia coli ECRC102 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA insig. 54 99
o Escherichia coli ECRC98 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA insig. 54 99
o Escherichia coli ECRC99 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA no data 54 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2649 ATP-dependent 23S rRNA helicase DbpA insig. 54 99
o Enterobacter asburiae PDN3 EX28DRAFT_1006 Superfamily II DNA and RNA helicases insig. 53 99
o Enterobacter sp. TBS_079 MPMX20_02441 ATP-dependent RNA helicase DbpA insig. 53 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5449 ATP-dependent 23S rRNA helicase DbpA insig. 53 100
o Variovorax sp. OAS795 ABID97_RS02340 ATP-dependent RNA helicase DbpA insig. 53 99
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02294 ATP-dependent RNA helicase DbpA insig. 54 96
o Ralstonia sp. UNC404CL21Col ABZR87_RS19855 ATP-dependent RNA helicase DbpA insig. 54 100
o Burkholderia phytofirmans PsJN BPHYT_RS00150 DEAD/DEAH box helicase insig. 54 96
o Dechlorosoma suillum PS Dsui_2946 DNA/RNA helicase, superfamily II insig. 53 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS00065 ATP-dependent RNA helicase DbpA cofit 55 96
o Castellaniella sp019104865 MT123 ABCV34_RS04635 ATP-dependent RNA helicase DbpA insig. 52 100
o Paraburkholderia graminis OAS925 ABIE53_000368 ATP-independent RNA helicase DbpA insig. 54 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS05195 ATP-dependent RNA helicase DbpA insig. 53 99
o Variovorax sp. SCN45 GFF7138 ATP-dependent 23S rRNA helicase DbpA insig. 53 99
o Klebsiella michiganensis M5al BWI76_RS12705 ATP-dependent RNA helicase insig. 52 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS02835 ATP-dependent RNA helicase DbpA insig. 52 99
o Rhodanobacter denitrificans MT42 LRK55_RS09695 ATP-dependent RNA helicase DbpA insig. 52 99
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS10055 ATP-dependent RNA helicase DbpA insig. 52 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS10105 ATP-dependent RNA helicase DbpA cofit 53 99
o Pantoea sp. MT58 IAI47_15055 ATP-dependent RNA helicase DbpA insig. 53 99
o Marinobacter adhaerens HP15 HP15_1329 DEAD/DEAH box helicase domain protein sig. 51 99
o Rhodanobacter sp. FW510-T8 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA insig. 52 99
o Acidovorax sp. GW101-3H11 Ac3H11_4671 ATP-dependent 23S rRNA helicase DbpA insig. 52 99
o Lysobacter sp. OAE881 ABIE51_RS14930 ATP-dependent RNA helicase DbpA insig. 51 98
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_24880 dbpA ATP-dependent RNA helicase DbpA cofit 51 99
o Erwinia tracheiphila SCR3 LU632_RS11995 dbpA ATP-dependent RNA helicase DbpA insig. 51 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA sig. 51 98
o Alteromonas macleodii MIT1002 MIT1002_03748 ATP-independent RNA helicase DbpA no data 46 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06050 ATP-dependent RNA helicase insig. 40 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05910 RNA helicase strong 42 81
  Desulfovibrio vulgaris Miyazaki F DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) no data 43 81
  Desulfovibrio vulgaris Hildenborough JW710 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) strong 42 84
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3056 Superfamily II DNA and RNA helicases no data 41 81
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 44 80
  Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase sig. 43 80
  Vibrio cholerae E7946 ATCC 55056 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase insig. 42 81
  Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 43 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02650 DEAD/DEAH box helicase insig. 43 80
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS07300 DEAD/DEAH box helicase insig. 44 80
  Dechlorosoma suillum PS Dsui_1351 DNA/RNA helicase, superfamily II strong 41 81
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08990 DEAD/DEAH box helicase strong 43 78
  Methanococcus maripaludis JJ MMJJ_RS02855 DEAD/DEAH box helicase strong 42 80
  Methanococcus maripaludis S2 MMP_RS02420 DEAD/DEAH box helicase no data 42 80
  Dickeya dianthicola 67-19 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase insig. 41 90
  Pectobacterium carotovorum WPP14 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase insig. 43 80
  Castellaniella sp019104865 MT123 ABCV34_RS13580 DEAD/DEAH box helicase sig. 44 82
  Serratia liquefaciens MT49 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase sig. 43 80