Homologs of Atu1359 from Agrobacterium fabrum C58

dnaK deletion suppressor protein
SEED: C4-type zinc finger protein, DksA/TraR family
KEGG: DnaK suppressor protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Agrobacterium fabrum C58 Atu1359 dnaK deletion suppressor protein strong 100 100
o Rhizobium sp. OAE497 ABIE40_RS10345 RNA polymerase-binding protein DksA strong 95 100
o Sinorhizobium meliloti 1021 SMc00469 DnaK suppressor protein no data 91 100
o Xanthobacter sp. DMC5 GFF1254 RNA polymerase-binding transcription factor DksA no data 76 100
o Rhodopseudomonas palustris CGA009 TX73_020255 RNA polymerase-binding protein DksA strong 79 96
o Bosea sp. OAE506 ABIE41_RS13460 RNA polymerase-binding protein DksA strong 74 100
o Azospirillum brasilense Sp245 AZOBR_RS11245 molecular chaperone DnaK no data 64 100
o Dinoroseobacter shibae DFL-12 Dshi_1884 transcriptional regulator, TraR/DksA family (RefSeq) no data 69 94
o Caulobacter crescentus NA1000 CCNA_02663 DnaK suppressor protein DksA strong 70 88
o Caulobacter crescentus NA1000 Δfur CCNA_02663 DnaK suppressor protein DksA cofit 70 88
o Magnetospirillum magneticum AMB-1 AMB_RS19350 RNA polymerase-binding protein DksA no data 65 94
o Phaeobacter inhibens DSM 17395 PGA1_c11040 dnaK suppressor protein DksA strong 66 94
o Azospirillum sp. SherDot2 MPMX19_01492 RNA polymerase-binding transcription factor DksA insig. 62 100
o Rhodospirillum rubrum S1H Rru_A2847 Transcriptional regulators, TraR/DksA family (NCBI) cofit 68 92
o Sphingobium sp. HT1-2 GFF2254 DksA family protein PA5536 (no Zn-finger) strong 68 94
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0274 transcriptional regulator, TraR/DksA family strong 67 94
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08530 RNA polymerase-binding protein DksA strong 68 84
  Variovorax sp. OAS795 ABID97_RS06170 RNA polymerase-binding protein DksA no data 52 98
  Variovorax sp. SCN45 GFF4486 DksA family protein PA5536 (no Zn-finger) no data 54 94
  Acidovorax sp. GW101-3H11 Ac3H11_2002 C4-type zinc finger protein, DksA/TraR family insig. 56 89
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF550 C4-type zinc finger protein, DksA/TraR family sig. 56 89
  Rhodanobacter sp. FW510-T8 OKGIIK_09500 dksA RNA polymerase-binding protein DksA sig. 55 96
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08750 RNA polymerase-binding protein DksA no data 55 96
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS09645 RNA polymerase-binding protein DksA strong 51 94
o Ralstonia solanacearum UW163 UW163_RS03935 RNA polymerase-binding protein DksA insig. 51 94
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS02440 RNA polymerase-binding protein DksA strong 53 99
  Rhodanobacter denitrificans MT42 LRK55_RS02195 RNA polymerase-binding protein DksA no data 53 99
o Ralstonia solanacearum GMI1000 RS_RS00230 RNA polymerase-binding protein DksA cofit 50 94
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07505 RNA polymerase-binding protein DksA no data 54 96
o Burkholderia phytofirmans PsJN BPHYT_RS01640 molecular chaperone DnaK no data 54 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02205 transcriptional regulator, TraR/DksA family insig. 54 89
o Ralstonia solanacearum PSI07 RPSI07_RS23720 RNA polymerase-binding protein DksA strong 50 94
o Ralstonia sp. UNC404CL21Col ABZR87_RS05100 RNA polymerase-binding protein DksA strong 49 94
o Paraburkholderia graminis OAS925 ABIE53_000423 DnaK suppressor protein strong 54 89
o Herbaspirillum seropedicae SmR1 HSERO_RS00840 molecular chaperone DnaK no data 52 88
o Cupriavidus basilensis FW507-4G11 RR42_RS01030 molecular chaperone DnaK no data 52 89
o Paraburkholderia sabiae LMG 24235 QEN71_RS00340 RNA polymerase-binding protein DksA no data 52 89
o Castellaniella sp019104865 MT123 ABCV34_RS13420 RNA polymerase-binding protein DksA no data 52 89
o Pseudomonas sp. RS175 PFR28_03714 RNA polymerase-binding transcription factor DksA strong 49 92
o Pseudomonas sp. DMC3 GFF4034 RNA polymerase-binding transcription factor DksA strong 51 90
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2307.1 C4-type zinc finger protein, DksA/TraR family no data 51 90
  Lysobacter sp. OAE881 ABIE51_RS13450 RNA polymerase-binding protein DksA no data 49 93
o Pseudomonas fluorescens FW300-N2C3 AO356_16095 molecular chaperone DnaK strong 48 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04926 RNA polymerase-binding transcription factor DksA strong 49 90
o Pseudomonas fluorescens SBW25 PFLU_RS25715 RNA polymerase-binding protein DksA strong 47 92
o Pseudomonas fluorescens SBW25-INTG PFLU_RS25715 RNA polymerase-binding protein DksA strong 47 92
o Kangiella aquimarina DSM 16071 B158DRAFT_0056 transcriptional regulator, TraR/DksA family strong 46 96
o Pseudomonas fluorescens FW300-N2E3 AO353_14420 molecular chaperone DnaK strong 47 90
o Pseudomonas aeruginosa MRSN321 DY961_RS09350 dksA;go_function=enzyme RNA polymerase-binding protein DksA strong 49 90
o Pseudomonas aeruginosa PA14 IKLFDK_30000 RNA polymerase-binding protein DksA strong 49 90
o Pseudomonas aeruginosa PUPa3 DQ20_RS52680 dksA;go_function=enzyme RNA polymerase-binding protein DksA sig. 49 90
o Pseudomonas segetis P6 MPMX49_01257 RNA polymerase-binding transcription factor DksA no data 49 90
o Pseudomonas stutzeri RCH2 Psest_1003 RNA polymerase-binding protein DksA no data 48 90
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family no data 49 86
o Pseudomonas orientalis W4I3 QF045_RS26135 RNA polymerase-binding protein DksA cofit 48 90
o Pseudomonas simiae WCS417 PS417_23875 molecular chaperone DnaK no data 48 90
o Pseudomonas syringae pv. syringae B728a Psyr_0835 transcriptional regulator, TraR/DksA family strong 46 92
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0835 transcriptional regulator, TraR/DksA family strong 46 92
o Pseudomonas sp. SVBP6 COO64_RS15070 dksA RNA polymerase-binding protein DksA cofit 47 90
o Dechlorosoma suillum PS Dsui_2717 RNA polymerase-binding protein DksA strong 48 92
o Pseudomonas sp. BP01 JOY50_RS27695 dksA RNA polymerase-binding protein DksA cofit 46 91
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family insig. 48 90
o Pseudomonas sp. S08-1 OH686_17280 RNA polymerase-binding protein DksA no data 47 90
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5160 C4-type zinc finger protein, DksA/TraR family strong 51 83
o Pseudomonas putida KT2440 PP_4693 RNA polymerase-binding transcription factor DksA strong 45 93
o Marinobacter adhaerens HP15 HP15_332 transcriptional regulator, TraR/DksA family no data 41 93
  Dickeya dadantii 3937 DDA3937_RS15935 RNA polymerase-binding protein DksA no data 49 86
o Shewanella sp. ANA-3 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) sig. 45 92
o Shewanella amazonensis SB2B Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) strong 44 92
  Escherichia coli BL21 ECD_00144 transcriptional regulator of rRNA transcription; DnaK suppressor protein no data 47 86
  Escherichia fergusonii Becca EFB2_03899 RNA polymerase-binding transcription factor DksA strong 47 86
  Escherichia coli ECOR27 NOLOHH_02690 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECOR38 HEPCGN_08295 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC100 OKFHMN_10345 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC101 MCAODC_00860 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC102 NIAGMN_08195 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC62 BNILDI_08980 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC98 JDDGAC_13940 dksA RNA polymerase-binding protein DksA strong 47 86
  Escherichia coli ECRC99 KEDOAH_17810 dksA RNA polymerase-binding protein DksA no data 47 86
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03517 RNA polymerase-binding transcription factor DksA sig. 47 86
  Escherichia coli Nissle 1917 ECOLIN_RS00800 RNA polymerase-binding protein DksA no data 47 86
  Escherichia coli Nissle 1917 ECOLIN_RS00815 RNA polymerase-binding protein DksA no data 47 86
  Escherichia coli BW25113 b0145 dksA DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) strong 47 86
o Shewanella oneidensis MR-1 SO0874 dksA DnaK suppressor protein (NCBI ptt file) no data 44 92
  Erwinia amylovora T8 OLJFJH_00765 RNA polymerase-binding protein DksA no data 46 86
o Pantoea sp. MT58 IAI47_15635 RNA polymerase-binding protein DksA strong 43 92
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS13365 RNA polymerase-binding protein DksA strong 43 92
o Klebsiella michiganensis M5al BWI76_RS05015 transcriptional regulator strong 43 92
  Dickeya dianthicola 67-19 HGI48_RS16050 RNA polymerase-binding protein DksA insig. 48 86
  Dickeya dianthicola ME23 DZA65_RS17135 RNA polymerase-binding protein DksA no data 48 86
  Klebsiella pneumoniae MKP103 KDGMDA_13270 RNA polymerase-binding protein DksA strong 46 86
  Serratia liquefaciens MT49 IAI46_21210 RNA polymerase-binding protein DksA strong 46 86
o Shewanella loihica PV-4 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) no data 45 86
o Methylophilus sp. DMC18 GFF2238 RNA polymerase-binding transcription factor DksA no data 47 92
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_15060 dksA RNA polymerase-binding protein DksA no data 45 86
  Erwinia tracheiphila SCR3 LU632_RS20080 dksA RNA polymerase-binding protein DksA no data 45 86
  Enterobacter asburiae PDN3 EX28DRAFT_3734 transcriptional regulator, TraR/DksA family no data 45 86
  Enterobacter sp. TBS_079 MPMX20_00831 RNA polymerase-binding transcription factor DksA strong 45 86
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF87 C4-type zinc finger protein, DksA/TraR family insig. 45 86
  Rahnella sp. WP5 EX31_RS03250 RNA polymerase-binding protein DksA strong 45 86