Homologs of Atu0090 from Agrobacterium fabrum C58

hypothetical protein
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

119 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Agrobacterium fabrum C58 Atu0090 hypothetical protein no data 100 100
o Rhizobium sp. OAE497 ABIE40_RS00320 ribosome maturation factor RimP no data 77 93
o Sinorhizobium meliloti 1021 SMc02911 hypothetical protein no data 74 87
  Xanthobacter sp. DMC5 GFF2298 Ribosome maturation factor RimP no data 58 91
  Bosea sp. OAE506 ABIE41_RS04540 ribosome maturation factor RimP no data 52 94
  Rhodopseudomonas palustris CGA009 TX73_002280 ribosome maturation factor RimP sig. 50 91
o Phaeobacter inhibens DSM 17395 PGA1_c34650 UPF0090 protein YhbC strong 48 94
o Dinoroseobacter shibae DFL-12 Dshi_3560 protein of unknown function DUF150 (RefSeq) no data 48 92
  Azospirillum brasilense Sp245 AZOBR_RS01420 ribosome maturation factor RimP no data 53 78
o Magnetospirillum magneticum AMB-1 AMB_RS20595 ribosome maturation factor cofit 45 82
  Rhodospirillum rubrum S1H Rru_A3778 Protein of unknown function DUF150 (NCBI) no data 46 88
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS13990 ribosome maturation factor RimP no data 41 81
o Caulobacter crescentus NA1000 CCNA_00044 ribosome maturation protein RimP strong 41 90
o Caulobacter crescentus NA1000 Δfur CCNA_00044 ribosome maturation protein RimP cofit 41 90
  Azospirillum sp. SherDot2 MPMX19_02519 Ribosome maturation factor RimP no data 44 72
o Sphingobium sp. HT1-2 GFF2359 Bacterial ribosome SSU maturation protein RimP no data 40 88
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2150 Uncharacterized protein conserved in bacteria no data 38 90
  Enterobacter asburiae PDN3 EX28DRAFT_3221 Uncharacterized protein conserved in bacteria no data 40 61
  Enterobacter sp. TBS_079 MPMX20_04075 Ribosome maturation factor RimP no data 40 61
  Erwinia amylovora T8 OLJFJH_07230 ribosome maturation factor RimP no data 38 61
  Pantoea sp. MT58 IAI47_17035 ribosome maturation factor RimP sig. 36 61
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS17255 rimP ribosome maturation factor RimP strong 36 61
  Marinobacter adhaerens HP15 HP15_3069 protein belonging to uncharacterized protein family UPF0090 no data 33 75
  Escherichia coli BL21 ECD_03037 ribosome maturation factor for 30S subunits strong 38 61
  Escherichia fergusonii Becca EFB2_00653 Ribosome maturation factor RimP no data 38 61
  Escherichia coli ECOR27 NOLOHH_09900 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECOR38 HEPCGN_16975 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC100 OKFHMN_18100 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC101 MCAODC_08620 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC102 NIAGMN_15860 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC62 BNILDI_01635 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC98 JDDGAC_21725 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli ECRC99 KEDOAH_10050 rimP ribosome maturation factor RimP no data 38 61
  Escherichia coli Nissle 1917 ECOLIN_RS18205 ribosome maturation factor RimP no data 38 61
  Escherichia coli Nissle 1917 ECOLIN_RS18225 ribosome maturation factor RimP no data 38 61
  Escherichia coli Nissle 1917 ECOLIN_RS18245 ribosome maturation factor RimP no data 38 61
  Escherichia coli Nissle 1917 ECOLIN_RS18265 ribosome maturation factor RimP no data 38 61
  Escherichia coli BW25113 b3170 rimP conserved protein (RefSeq) no data 38 61
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1496 FIG000325: clustered with transcription termination protein NusA no data 43 54
  Klebsiella pneumoniae MRSN742743 KFA93_RS13165 rimP;go_process=ribosomal ribosome maturation factor RimP no data 37 61
  Serratia liquefaciens MT49 IAI46_01925 ribosome maturation factor RimP no data 37 61
  Vibrio cholerae E7946 ATCC 55056 CSW01_03380 ribosome maturation factor RimP no data 35 63
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13925 rimP ribosome maturation factor RimP no data 36 61
  Alteromonas macleodii MIT1002 MIT1002_01769 Ribosome maturation factor RimP no data 32 67
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS06035 ribosome maturation factor RimP no data 41 63
  Erwinia tracheiphila SCR3 LU632_RS21070 rimP ribosome maturation factor RimP no data 36 61
  Klebsiella michiganensis M5al BWI76_RS25100 ribosome maturation factor no data 36 61
  Pectobacterium carotovorum WPP14 HER17_RS18220 ribosome maturation factor RimP no data 37 61
  Dickeya dadantii 3937 DDA3937_RS03060 ribosome maturation factor RimP no data 36 61
  Rahnella sp. WP5 EX31_RS08550 ribosome maturation factor RimP no data 38 61
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2000.1 FIG000325: clustered with transcription termination protein NusA no data 39 60
  Dickeya dianthicola 67-19 HGI48_RS03230 ribosome maturation factor RimP no data 36 61
  Dickeya dianthicola ME23 DZA65_RS03225 ribosome maturation factor RimP no data 36 61
  Kangiella aquimarina DSM 16071 B158DRAFT_0112 Uncharacterized protein conserved in bacteria strong 37 63
  Klebsiella pneumoniae MKP103 KDGMDA_05910 ribosome maturation factor RimP no data 41 54
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00530 Ribosome maturation factor RimP no data 41 54
  Shewanella amazonensis SB2B Sama_0959 hypothetical protein (RefSeq) no data 34 65
  Rhodanobacter denitrificans MT42 LRK55_RS00830 ribosome maturation factor RimP no data 38 63
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS01055 ribosome maturation factor RimP no data 38 63
  Pseudomonas sp. BP01 JOY50_RS26825 rimP ribosome maturation factor RimP no data 38 56
  Lysobacter sp. OAE881 ABIE51_RS08385 ribosome maturation factor RimP no data 34 74
  Pseudomonas putida KT2440 PP_4714 ribosome maturation factor no data 37 56
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09060 ribosome maturation factor RimP no data 37 63
  Rhodanobacter sp. FW510-T8 OKGIIK_05840 rimP ribosome maturation protein RimP no data 37 63
  Pseudomonas segetis P6 ACVTMO_RS05945 rimP ribosome maturation factor RimP no data 33 65
  Pseudomonas aeruginosa MRSN321 DY961_RS09475 rimP;go_process=ribosomal ribosome maturation factor RimP no data 31 75
  Pseudomonas aeruginosa PA14 IKLFDK_29870 ribosome maturation factor RimP no data 31 75
  Pseudomonas aeruginosa PUPa3 DQ20_RS52560 rimP;go_process=ribosomal ribosome maturation factor RimP no data 31 75
  Pseudomonas syringae pv. syringae B728a Psyr_4182 Protein of unknown function DUF150 no data 36 56
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4182 Protein of unknown function DUF150 no data 36 56
  Shewanella sp. ANA-3 Shewana3_1028 hypothetical protein (RefSeq) no data 32 63
  Pseudomonas sp. S08-1 OH686_17135 Bacterial ribosome SSU maturation protein RimP no data 30 75
  Pseudomonas sp. SVBP6 COO64_RS15180 rimP ribosome maturation factor RimP no data 35 56
  Pseudomonas fluorescens FW300-N2E3 AO353_05570 ribosome maturation protein RimP no data 37 56
  Pseudomonas sp. RS175 PFR28_00088 Ribosome maturation factor RimP no data 37 56
  Shewanella oneidensis MR-1 SO1202 conserved hypothetical protein (NCBI ptt file) no data 32 61
  Pseudomonas sp. DMC3 GFF4986 Ribosome maturation factor RimP no data 38 54
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5090 FIG000325: clustered with transcription termination protein NusA no data 38 54
  Pseudomonas protegens RBAN4 FABNJH_04380 rimP ribosome maturation factor RimP no data 37 56
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3355 FIG000325: clustered with transcription termination protein NusA no data 37 56
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04947 Ribosome maturation factor RimP no data 38 54
  Pseudomonas orientalis W4I3 QF045_RS26235 ribosome maturation factor RimP no data 38 54
  Pseudomonas simiae WCS417 PS417_23980 ribosome maturation protein RimP no data 38 54
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1163 FIG000325: clustered with transcription termination protein NusA no data 38 54
  Pseudomonas fluorescens FW300-N2C3 AO356_07420 ribosome maturation protein RimP no data 37 56
  Pseudomonas fluorescens SBW25 PFLU_RS25820 ribosome maturation factor RimP no data 38 54
  Pseudomonas fluorescens SBW25-INTG PFLU_RS25820 ribosome maturation factor RimP no data 38 54
  Pseudomonas stutzeri RCH2 Psest_0979 Uncharacterized protein conserved in bacteria no data 31 75
  Shewanella loihica PV-4 Shew_2829 hypothetical protein (RefSeq) no data 39 48
  Acinetobacter radioresistens SK82 MPMX26_00252 Ribosome maturation factor RimP strong 33 83
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15670 ribosome maturation factor RimP no data 38 56
  Ralstonia solanacearum UW163 UW163_RS13130 ribosome maturation factor RimP no data 38 56
  Ralstonia solanacearum PSI07 RPSI07_RS17685 ribosome maturation factor RimP no data 32 82
  Cupriavidus basilensis FW507-4G11 RR42_RS12855 ribosome maturation protein RimP no data 36 56
  Fusobacterium nucleatum SB010 HUW76_01020 ribosome maturation factor RimP strong 30 62
  Desulfovibrio vulgaris Hildenborough JW710 DVU0511 conserved hypothetical protein (TIGR) insig. 29 66
  Dechlorosoma suillum PS Dsui_2724 hypothetical protein no data 34 58
  Ralstonia solanacearum GMI1000 RS_RS06450 ribosome maturation factor no data 34 65
  Acinetobacter baumannii LAC-4 RR41_RS17310 ribosome maturation factor RimP no data 33 60
  Ralstonia sp. UNC404CL21Col ABZR87_RS11200 ribosome maturation factor RimP no data 36 57
  Burkholderia phytofirmans PsJN BPHYT_RS08060 ribosome maturation factor RimP strong 29 62
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05102 ribosome maturation factor RimP sig. 29 62
  Paraburkholderia sabiae LMG 24235 QEN71_RS23110 ribosome maturation factor RimP sig. 27 71
  Castellaniella sp019104865 MT123 ABCV34_RS02115 ribosome maturation factor RimP no data 35 56
  Paraburkholderia graminis OAS925 ABIE53_001828 ribosome maturation factor RimP sig. 27 71
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4341 FIG000325: clustered with transcription termination protein NusA strong 31 66
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS22730 ribosome assembly cofactor RimP no data 27 77
  Acidovorax sp. GW101-3H11 Ac3H11_2869 FIG000325: clustered with transcription termination protein NusA no data 33 65
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0707 Uncharacterized protein conserved in bacteria no data 30 63
  Variovorax sp. SCN45 GFF224 Bacterial ribosome SSU maturation protein RimP no data 29 56
  Herbaspirillum seropedicae SmR1 HSERO_RS18005 ribosome maturation protein RimP no data 29 62
  Variovorax sp. OAS795 ABID97_RS16495 ribosome maturation factor RimP no data 28 56
  Desulfovibrio vulgaris Miyazaki F DvMF_2516 protein of unknown function DUF150 (RefSeq) sig. 32 43
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS03080 ribosome assembly cofactor RimP no data 27 77
  Methylophilus sp. DMC18 GFF2850 Ribosome maturation factor RimP no data 26 66
  Synechococcus elongatus PCC 7942 Synpcc7942_2023 hypothetical protein strong 28 52
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14455 ribosome maturation factor strong 28 61
  Synechocystis sp000284455 PCC 6803 SGL_RS02465 ribosome maturation factor RimP no data 30 44
  Mycobacterium tuberculosis H37Rv Rv2842c Conserved protein no data 33 43