Homologs of rimM from Shewanella oneidensis MR-1

rimM: 16S rRNA processing protein RimM (NCBI ptt file)
SEED: 16S rRNA processing protein RimM
KEGG: 16S rRNA processing protein RimM

118 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO1358 rimM 16S rRNA processing protein RimM (NCBI ptt file) no data 100 100
o Shewanella sp. ANA-3 Shewana3_3016 rimM 16S rRNA-processing protein RimM (RefSeq) no data 97 99
o Shewanella loihica PV-4 Shew_1064 rimM 16S rRNA-processing protein (RefSeq) no data 81 99
o Shewanella amazonensis SB2B Sama_0890 rimM 16S rRNA-processing protein RimM (RefSeq) no data 78 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_03000 ribosome maturation factor RimM no data 54 99
o Enterobacter asburiae PDN3 EX28DRAFT_2711 16S rRNA processing protein RimM no data 50 97
o Klebsiella michiganensis M5al BWI76_RS21520 ribosome maturation factor RimM no data 50 97
o Klebsiella pneumoniae MKP103 KDGMDA_02215 ribosome maturation factor RimM no data 51 96
o Klebsiella pneumoniae MRSN742743 KFA93_RS24650 rimM;go_component=ribosome|0005840||IEA;go_function=ribosome ribosome maturation factor RimM no data 51 96
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4171 16S rRNA processing protein RimM no data 50 97
o Escherichia coli BL21 ECD_02497 ribosome maturation factor no data 49 96
o Escherichia fergusonii Becca EFB2_01284 Ribosome maturation factor RimM no data 49 96
o Escherichia coli ECOR27 NOLOHH_12855 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECOR38 HEPCGN_20300 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC100 OKFHMN_21180 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC101 MCAODC_11710 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC102 NIAGMN_18950 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC62 BNILDI_11660 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC98 JDDGAC_24845 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli ECRC99 KEDOAH_07040 rimM ribosome maturation factor RimM no data 49 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01098 Ribosome maturation factor RimM no data 49 96
o Escherichia coli Nissle 1917 ECOLIN_RS14740 ribosome maturation factor RimM no data 49 96
o Escherichia coli BW25113 b2608 yfjA orf, hypothetical protein (VIMSS) no data 49 96
o Enterobacter sp. TBS_079 MPMX20_03478 Ribosome maturation factor RimM no data 49 97
o Serratia liquefaciens MT49 IAI46_03925 ribosome maturation factor RimM no data 49 97
o Pantoea sp. MT58 IAI47_04380 ribosome maturation factor RimM no data 48 96
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS04750 rimM ribosome maturation factor RimM no data 48 96
o Rahnella sp. WP5 EX31_RS07720 ribosome maturation factor RimM no data 46 97
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_01525 rimM ribosome maturation factor RimM no data 45 99
o Pectobacterium carotovorum WPP14 HER17_RS05120 ribosome maturation factor RimM no data 45 96
o Erwinia tracheiphila SCR3 LU632_RS15660 rimM ribosome maturation factor RimM no data 45 99
o Dickeya dadantii 3937 DDA3937_RS16170 ribosome maturation factor RimM no data 46 97
o Dickeya dianthicola ME23 DZA65_RS17375 ribosome maturation factor RimM no data 45 97
o Dickeya dianthicola 67-19 HGI48_RS16280 ribosome maturation factor RimM no data 45 97
o Erwinia amylovora T8 OLJFJH_09660 ribosome maturation factor RimM no data 46 96
o Alteromonas macleodii MIT1002 MIT1002_01309 hypothetical protein no data 44 99
o Kangiella aquimarina DSM 16071 B158DRAFT_2262 16S rRNA processing protein RimM no data 45 99
o Pseudomonas aeruginosa MRSN321 DY961_RS14250 rimM;go_function=RNA ribosome maturation factor RimM no data 37 100
o Pseudomonas aeruginosa PUPa3 DQ20_RS42875 rimM;go_function=RNA ribosome maturation factor RimM no data 37 100
o Pseudomonas aeruginosa PA14 IKLFDK_19115 ribosome maturation factor RimM no data 37 100
o Pseudomonas segetis P6 ACVTMO_RS07770 rimM ribosome maturation factor RimM no data 39 99
o Marinobacter adhaerens HP15 HP15_759 16S rRNA-processing protein RimM no data 38 95
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02505 ribosome maturation factor RimM no data 38 99
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07440 ribosome maturation factor RimM no data 38 99
o Pseudomonas stutzeri RCH2 Psest_3132 16S rRNA processing protein RimM no data 39 99
o Pseudomonas sp. S08-1 OH686_17730 16S rRNA processing protein RimM no data 38 98
o Rhodanobacter sp. FW510-T8 OKGIIK_09560 rimM ribosome maturation factor RimM no data 37 99
o Rhodanobacter denitrificans MT42 LRK55_RS02260 ribosome maturation factor RimM no data 37 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08820 ribosome maturation factor RimM no data 37 99
o Pseudomonas sp. SVBP6 COO64_RS04885 rimM ribosome maturation factor RimM no data 37 95
o Pseudomonas sp. DMC3 GFF1983 Ribosome maturation factor RimM no data 38 95
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1717 16S rRNA processing protein RimM no data 38 95
o Pseudomonas sp. BP01 JOY50_RS11680 rimM ribosome maturation factor RimM no data 37 95
o Pseudomonas sp. RS175 PFR28_00328 Ribosome maturation factor RimM no data 36 95
o Pseudomonas fluorescens FW300-N2E3 AO353_04380 16S rRNA processing protein RimM no data 38 95
o Pseudomonas putida KT2440 PP_1463 Ribosome maturation factor RimM no data 36 95
o Pseudomonas fluorescens FW300-N2C3 AO356_06400 16S rRNA processing protein RimM no data 36 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3148 16S rRNA processing protein RimM no data 36 95
o Pseudomonas protegens RBAN4 FABNJH_05665 rimM ribosome maturation factor RimM no data 37 95
o Pseudomonas orientalis W4I3 QF045_RS25105 ribosome maturation factor RimM no data 37 95
o Pseudomonas fluorescens SBW25 PFLU_RS24575 ribosome maturation factor RimM no data 36 95
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24575 ribosome maturation factor RimM no data 36 95
o Pseudomonas syringae pv. syringae B728a Psyr_1283 16S rRNA processing protein RimM no data 35 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1283 16S rRNA processing protein RimM no data 35 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04732 Ribosome maturation factor RimM no data 36 95
o Pseudomonas simiae WCS417 PS417_22915 16S rRNA processing protein RimM no data 36 95
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_872 16S rRNA processing protein RimM no data 36 95
o Methylophilus sp. DMC18 GFF2338 Ribosome maturation factor RimM no data 36 95
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04293 16S rRNA processing protein RimM no data 37 95
o Lysobacter sp. OAE881 ABIE51_RS07745 ribosome maturation factor RimM no data 33 98
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3767.1 16S rRNA processing protein RimM no data 33 99
  Paraburkholderia graminis OAS925 ABIE53_003127 16S rRNA processing protein RimM no data 35 95
  Burkholderia phytofirmans PsJN BPHYT_RS14760 ribosome maturation factor RimM no data 35 95
o Acinetobacter baumannii LAC-4 RR41_RS01715 ribosome maturation factor RimM no data 35 94
o Acinetobacter radioresistens SK82 MPMX26_02784 Ribosome maturation factor RimM no data 36 94
o Dechlorosoma suillum PS Dsui_3514 16S rRNA processing protein RimM no data 36 100
  Paraburkholderia sabiae LMG 24235 QEN71_RS04215 ribosome maturation factor RimM no data 31 95
o Acidovorax sp. GW101-3H11 Ac3H11_1685 16S rRNA processing protein RimM no data 33 95
o Herbaspirillum seropedicae SmR1 HSERO_RS07580 ribosome maturation factor RimM no data 29 95
  Cupriavidus basilensis FW507-4G11 RR42_RS04625 16S rRNA processing protein RimM no data 32 95
o Variovorax sp. SCN45 GFF3950 16S rRNA processing protein RimM no data 32 94
o Variovorax sp. OAS795 ABID97_RS08745 ribosome maturation factor RimM no data 31 94
  Ralstonia solanacearum GMI1000 RS_RS04645 ribosome maturation factor RimM no data 32 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS13910 ribosome maturation factor RimM no data 32 95
  Ralstonia solanacearum UW163 UW163_RS15900 ribosome maturation factor RimM no data 32 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5739 16S rRNA processing protein RimM no data 31 99
  Ralstonia solanacearum PSI07 RPSI07_RS19560 ribosome maturation factor RimM no data 33 95
  Castellaniella sp019104865 MT123 ABCV34_RS05580 ribosome maturation factor RimM no data 30 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS09605 ribosome maturation factor RimM no data 31 94
  Bosea sp. OAE506 ABIE41_RS11745 ribosome maturation factor RimM no data 31 95
  Rhizobium sp. OAE497 ABIE40_RS18350 ribosome maturation factor RimM no data 28 97
  Xanthobacter sp. DMC5 GFF1912 Ribosome maturation factor RimM no data 31 92
  Rhodopseudomonas palustris CGA009 TX73_001260 ribosome maturation factor RimM insig. 25 93
  Azospirillum sp. SherDot2 MPMX19_00324 Ribosome maturation factor RimM no data 32 93
  Azospirillum brasilense Sp245 AZOBR_RS03520 16S rRNA-processing protein RimM no data 31 93
  Phaeobacter inhibens DSM 17395 PGA1_c00540 putative 16S rRNA-processing protein RimM no data 24 93
  Agrobacterium fabrum C58 Atu2700 16S rRNA processing protein no data 26 92
  Rhodospirillum rubrum S1H Rru_A1186 16S rRNA processing protein RimM (NCBI) no data 30 93
  Sinorhizobium meliloti 1021 SMc03860 16S rRNA-processing protein RimM no data 27 97
  Magnetospirillum magneticum AMB-1 AMB_RS20545 ribosome maturation factor RimM no data 30 84
  Dinoroseobacter shibae DFL-12 Dshi_0344 16S rRNA processing protein RimM (RefSeq) no data 27 93
  Synechococcus elongatus PCC 7942 Synpcc7942_2259 rimM 16S rRNA-processing protein strong 28 82
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14860 ribosome maturation factor RimM no data 28 66
  Desulfovibrio vulgaris Miyazaki F DvMF_2885 16S rRNA processing protein RimM (RefSeq) insig. 24 97
  Sphingobium sp. HT1-2 GFF3806 16S rRNA processing protein RimM no data 22 75
  Caulobacter crescentus NA1000 CCNA_03766 16S rRNA processing protein RimM no data 28 79
  Caulobacter crescentus NA1000 Δfur CCNA_03766 16S rRNA processing protein RimM cofit 28 79
  Bacteroides ovatus ATCC 8483 BACOVA_01433 16S rRNA processing protein RimM no data 25 96
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4160 16S rRNA processing protein RimM no data 23 86
  Bacteroides thetaiotaomicron VPI-5482 BT2004 RimM protein, required for 16S rRNA processing (NCBI ptt file) no data 23 97
  Desulfovibrio vulgaris Hildenborough JW710 DVU0837 rimM 16S rRNA processing protein RimM (TIGR) no data 26 93
  Bifidobacterium breve UCC2003 BBR_RS12290 ribosome maturation factor RimM no data 30 63
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1339 16S rRNA processing protein RimM no data 22 90
  Fusobacterium nucleatum SB010 HUW76_02825 16S rRNA processing protein RimM no data 23 93
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_20585 16S rRNA processing protein RimM no data 23 92
  Bacteroides stercoris CC31F HMPREF1181_RS07890 16S rRNA processing protein RimM no data 23 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00535 16S rRNA processing protein RimM no data 27 99
  Phocaeicola dorei CL03T12C01 ABI39_RS08155 16S rRNA processing protein RimM no data 26 99