Conservation of cofitness between Xcc-8004.4073.1 and Xcc-8004.1967.1 in Xanthomonas campestris pv. campestris strain 8004

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4073.1 Amidophosphoribosyltransferase (EC 2.4.2.14) 1.0 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.77 20
Lysobacter sp. OAE881 0.82 ABIE51_RS06180 amidophosphoribosyltransferase 0.67 ABIE51_RS08265 tryptophan synthase subunit alpha low > 62
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS06775 amidophosphoribosyltransferase 0.52 ABZR86_RS07995 tryptophan synthase subunit alpha 0.92 52
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_05570 purF amidophosphoribosyltransferase 0.53 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS01340 amidophosphoribosyltransferase 0.52 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS01105 amidophosphoribosyltransferase 0.52 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Pseudomonas sp. S08-1 0.65 OH686_04420 amidophosphoribosyltransferase 0.37 OH686_12430 tryptophan synthase, alpha subunit — —
Pseudomonas putida KT2440 0.64 PP_2000 amidophosphoribosyl transferase 0.38 PP_0082 tryptophan synthase alpha chain 0.28 58
Pseudomonas sp. RS175 0.64 PFR28_02811 Amidophosphoribosyltransferase 0.38 PFR28_04716 Tryptophan synthase alpha chain — —
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_3935 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.39 PfGW456L13_565 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS20515 amidophosphoribosyltransferase 0.38 PFLU_RS00175 tryptophan synthase subunit alpha 0.84 11
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS20515 amidophosphoribosyltransferase 0.38 PFLU_RS00175 tryptophan synthase subunit alpha 0.67 1
Pseudomonas simiae WCS417 0.64 PS417_18535 amidophosphoribosyltransferase 0.37 PS417_00180 tryptophan synthase subunit alpha — —
Pseudomonas stutzeri RCH2 0.64 Psest_2579 amidophosphoribosyltransferase 0.38 Psest_0062 tryptophan synthase, alpha subunit low > 67
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_20690 amidophosphoribosyltransferase 0.38 AO353_10705 tryptophan synthase subunit alpha — —
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_21465 amidophosphoribosyltransferase 0.39 AO356_10910 tryptophan synthase subunit alpha 0.83 4
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_76 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.39 Pf6N2E2_4047 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1668 amidophosphoribosyltransferase 0.38 Psyr_0033 tryptophan synthase, alpha chain low > 86
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1668 amidophosphoribosyltransferase 0.38 Psyr_0033 tryptophan synthase, alpha chain 0.52 86
Shewanella loihica PV-4 0.62 Shew_2302 amidophosphoribosyltransferase (RefSeq) 0.26 Shew_2256 trpA tryptophan synthase subunit alpha (RefSeq) 0.88 14
Marinobacter adhaerens HP15 0.62 HP15_1821 amidophosphoribosyltransferase 0.49 HP15_1826 tryptophan synthase, alpha subunit — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_05115 amidophosphoribosyltransferase 0.27 CSW01_05925 tryptophan synthase subunit alpha low > 62
Shewanella amazonensis SB2B 0.61 Sama_2146 amidophosphoribosyltransferase (RefSeq) 0.25 Sama_2134 trpA tryptophan synthase subunit alpha (RefSeq) 0.88 13
Erwinia tracheiphila SCR3 0.61 LU632_RS07865 purF amidophosphoribosyltransferase 0.25 LU632_RS12775 trpA tryptophan synthase subunit alpha low > 74
Shewanella sp. ANA-3 0.61 Shewana3_1483 amidophosphoribosyltransferase (RefSeq) 0.25 Shewana3_1515 trpA tryptophan synthase subunit alpha (RefSeq) 0.91 14
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1927 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.25 GFF2726 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 78
Pantoea sp. MT58 0.61 IAI47_06275 amidophosphoribosyltransferase 0.26 IAI47_09165 tryptophan synthase subunit alpha 0.76 51
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01393 Amidophosphoribosyltransferase 0.25 OHPLBJKB_02423 Tryptophan synthase alpha chain low > 73
Serratia liquefaciens MT49 0.61 IAI46_17810 amidophosphoribosyltransferase 0.27 IAI46_14045 tryptophan synthase subunit alpha low > 86
Escherichia coli ECRC102 0.61 NIAGMN_20485 purF amidophosphoribosyltransferase 0.25 NIAGMN_26845 trpA tryptophan synthase subunit alpha — —
Escherichia coli ECRC99 0.61 KEDOAH_05480 purF amidophosphoribosyltransferase 0.25 KEDOAH_26075 trpA tryptophan synthase subunit alpha — —
Escherichia fergusonii Becca 0.61 EFB2_01546 Amidophosphoribosyltransferase 0.25 EFB2_02666 Tryptophan synthase alpha chain low > 86
Escherichia coli ECRC101 0.61 MCAODC_13755 purF amidophosphoribosyltransferase 0.25 MCAODC_15590 trpA tryptophan synthase subunit alpha low > 87
Escherichia coli ECRC100 0.61 OKFHMN_22715 purF amidophosphoribosyltransferase 0.25 OKFHMN_02675 trpA tryptophan synthase subunit alpha low > 80
Escherichia coli ECOR38 0.61 HEPCGN_21910 purF amidophosphoribosyltransferase 0.25 HEPCGN_25515 trpA tryptophan synthase subunit alpha 0.90 20
Escherichia coli ECRC98 0.61 JDDGAC_26675 purF amidophosphoribosyltransferase 0.25 JDDGAC_05220 trpA tryptophan synthase subunit alpha low > 86
Escherichia coli Nissle 1917 0.61 ECOLIN_RS13405 amidophosphoribosyltransferase 0.25 ECOLIN_RS07595 tryptophan synthase subunit alpha — —
Escherichia coli ECRC62 0.61 BNILDI_13255 purF amidophosphoribosyltransferase 0.25 BNILDI_18480 trpA tryptophan synthase subunit alpha 0.89 28
Escherichia coli ECOR27 0.60 NOLOHH_14335 purF amidophosphoribosyltransferase 0.25 NOLOHH_20335 trpA tryptophan synthase subunit alpha 0.88 19
Escherichia coli BL21 0.60 ECD_02237 amidophosphoribosyltransferase 0.25 ECD_01234 tryptophan synthase, alpha subunit low > 61
Escherichia coli BW25113 0.60 b2312 purF amidophosphoribosyltransferase (NCBI) 0.25 b1260 trpA tryptophan synthase subunit alpha (NCBI) 0.80 27
Klebsiella michiganensis M5al 0.60 BWI76_RS20350 amidophosphoribosyltransferase 0.25 BWI76_RS11840 tryptophan synthase subunit alpha 0.80 34
Enterobacter sp. TBS_079 0.60 MPMX20_03247 Amidophosphoribosyltransferase 0.25 MPMX20_02514 Tryptophan synthase alpha chain 0.79 57
Dickeya dadantii 3937 0.60 DDA3937_RS14435 amidophosphoribosyltransferase 0.27 DDA3937_RS10460 tryptophan synthase subunit alpha 0.75 20
Rahnella sp. WP5 0.60 EX31_RS19570 amidophosphoribosyltransferase 0.25 EX31_RS09980 tryptophan synthase subunit alpha 0.94 11
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0292 amidophosphoribosyltransferase (EC 2.4.2.14) 0.25 EX28DRAFT_0932 tryptophan synthase, alpha chain (EC 4.2.1.20) 0.61 6
Pectobacterium carotovorum WPP14 0.60 HER17_RS07020 amidophosphoribosyltransferase 0.25 HER17_RS10940 tryptophan synthase subunit alpha 0.94 26
Acinetobacter radioresistens SK82 0.60 MPMX26_01122 Amidophosphoribosyltransferase 0.43 MPMX26_02611 Tryptophan synthase alpha chain — —
Shewanella oneidensis MR-1 0.60 SO3064 purF amidophosphoribosyltransferase (NCBI ptt file) 0.24 SO3024 trpA tryptophan synthase, alpha subunit (NCBI ptt file) 0.89 13
Dickeya dianthicola ME23 0.60 DZA65_RS15335 amidophosphoribosyltransferase 0.27 DZA65_RS10940 tryptophan synthase subunit alpha 0.66 35
Dickeya dianthicola 67-19 0.60 HGI48_RS14405 amidophosphoribosyltransferase 0.27 HGI48_RS10460 tryptophan synthase subunit alpha 0.66 34
Alteromonas macleodii MIT1002 0.59 MIT1002_02524 Amidophosphoribosyltransferase 0.24 MIT1002_01425 Tryptophan synthase alpha chain — —
Dechlorosoma suillum PS 0.58 Dsui_3186 amidophosphoribosyltransferase 0.45 Dsui_3191 tryptophan synthase, alpha subunit — —
Paraburkholderia graminis OAS925 0.58 ABIE53_004816 amidophosphoribosyltransferase 0.44 ABIE53_004811 tryptophan synthase alpha chain — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_06060 amidophosphoribosyltransferase 0.42 H281DRAFT_06065 tryptophan synthase, alpha chain low > 103
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS33840 amidophosphoribosyltransferase 0.42 BPHYT_RS33865 tryptophan synthase alpha chain 0.84 21
Ralstonia solanacearum GMI1000 0.57 RS_RS09930 amidophosphoribosyltransferase 0.48 RS_RS09955 tryptophan synthase subunit alpha — —
Ralstonia solanacearum UW163 0.57 UW163_RS11175 amidophosphoribosyltransferase 0.48 UW163_RS11150 tryptophan synthase subunit alpha — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS02550 amidophosphoribosyltransferase 0.48 RALBFv3_RS02575 tryptophan synthase subunit alpha — —
Ralstonia solanacearum PSI07 0.57 RPSI07_RS14765 amidophosphoribosyltransferase 0.48 RPSI07_RS14740 tryptophan synthase subunit alpha — —
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS14465 amidophosphoribosyltransferase 0.49 ABZR87_RS14490 tryptophan synthase subunit alpha — —
Castellaniella sp019104865 MT123 0.56 ABCV34_RS04130 amidophosphoribosyltransferase 0.45 ABCV34_RS08430 tryptophan synthase subunit alpha — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS14325 amidophosphoribosyltransferase 0.45 RR42_RS14350 tryptophan synthase alpha chain — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS17680 amidophosphoribosyltransferase 0.44 QEN71_RS17655 tryptophan synthase subunit alpha 0.93 4
Hydrogenophaga sp. GW460-11-11-14-LB1 0.55 GFF300 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.42 GFF3354 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS16445 amidophosphoribosyltransferase 0.42 HSERO_RS16470 tryptophan synthase subunit alpha — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2608 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.45 Ac3H11_1535 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.88 3
Variovorax sp. SCN45 0.52 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) 0.44 GFF3882 Tryptophan synthase alpha chain (EC 4.2.1.20) — —
Variovorax sp. OAS795 0.52 ABID97_RS21635 amidophosphoribosyltransferase 0.44 ABID97_RS08425 tryptophan synthase subunit alpha — —
Methanococcus maripaludis JJ 0.34 MMJJ_RS08440 amidophosphoribosyltransferase 0.31 MMJJ_RS09195 tryptophan synthase subunit alpha — —
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0004 purF amidophosphoribosyltransferase 0.33 Synpcc7942_0411 trpA tryptophan synthase subunit alpha — —
Methanococcus maripaludis S2 0.32 MMP_RS05915 amidophosphoribosyltransferase 0.32 MMP_RS05185 tryptophan synthase subunit alpha — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01730 amidophosphoribosyltransferase 0.35 CCNA_03657 tryptophan synthase alpha chain low > 67
Caulobacter crescentus NA1000 0.31 CCNA_01730 amidophosphoribosyltransferase 0.35 CCNA_03657 tryptophan synthase alpha chain 0.79 18
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0161 purF amidophosphoribosyltransferase (TIGR) 0.30 DVU0471 trpA tryptophan synthase, alpha subunit (TIGR) — —
Rhodospirillum rubrum S1H 0.30 Rru_A0404 Amidophosphoribosyl transferase (NCBI) 0.39 Rru_A3428 Tryptophan synthase (NCBI) low > 58
Mycobacterium tuberculosis H37Rv 0.30 Rv0808 Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase) 0.26 Rv1613 Probable tryptophan synthase, alpha subunit TrpA — —
Bosea sp. OAE506 0.30 ABIE41_RS17810 amidophosphoribosyltransferase 0.38 ABIE41_RS03930 tryptophan synthase subunit alpha — —
Bifidobacterium breve UCC2003 0.30 BBR_RS13380 amidophosphoribosyltransferase 0.23 BBR_RS15810 tryptophan synthase subunit alpha low > 34
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_2307 amidophosphoribosyltransferase (RefSeq) 0.27 DvMF_1740 trpA tryptophan synthase subunit alpha (RefSeq) 0.81 11
Azospirillum sp. SherDot2 0.30 MPMX19_00906 Amidophosphoribosyltransferase 0.36 MPMX19_02737 Tryptophan synthase alpha chain 0.78 51
Dinoroseobacter shibae DFL-12 0.29 Dshi_2132 amidophosphoribosyltransferase (RefSeq) 0.36 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.29 TX73_015990 amidophosphoribosyltransferase 0.37 TX73_000365 tryptophan synthase subunit alpha — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS08310 amidophosphoribosyltransferase 0.37 AZOBR_RS00520 tryptophan synthase subunit alpha 0.77 2
Phaeobacter inhibens DSM 17395 0.29 PGA1_c10810 amidophosphoribosyltransferase PurF 0.38 PGA1_c04930 tryptophan synthase alpha chain — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS03735 amidophosphoribosyltransferase 0.38 A4249_RS11320 tryptophan synthase subunit alpha — —
Agrobacterium fabrum C58 0.28 Atu1075 amidophosphoribosyltransferase 0.39 Atu0019 tryptophan synthase alpha subunit — —
Rhizobium sp. OAE497 0.28 ABIE40_RS06270 amidophosphoribosyltransferase 0.39 ABIE40_RS19340 tryptophan synthase subunit alpha — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS10545 amidophosphoribosyltransferase 0.40 AMB_RS20300 tryptophan synthase subunit alpha — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_3626 amidophosphoribosyltransferase (EC 2.4.2.14) 0.33 Ga0059261_0239 tryptophan synthase, alpha chain (EC 4.2.1.20) — —
Sinorhizobium meliloti 1021 0.27 SMc00554 amidophosphoribosyltransferase 0.39 SMc02765 tryptophan synthase subunit alpha 0.77 81
Parabacteroides merdae CL09T00C40 0.12 HMPREF1078_RS10430 amidophosphoribosyltransferase 0.29 HMPREF1078_RS00120 tryptophan synthase subunit alpha low > 61
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05376 putative amidophosphoribosyltransferase 0.29 BACOVA_03785 tryptophan synthase, alpha subunit low > 94
Bacteroides thetaiotaomicron VPI-5482 0.11 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) 0.30 BT0527 tryptophan synthase alpha chain (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.11 ABI39_RS18960 amidophosphoribosyltransferase 0.30 ABI39_RS21075 tryptophan synthase subunit alpha low > 72
Phocaeicola vulgatus CL09T03C04 0.11 HMPREF1058_RS04675 amidophosphoribosyltransferase 0.30 HMPREF1058_RS07200 tryptophan synthase subunit alpha low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_4653 Glutamine phosphoribosylpyrophosphate amidotransferase 0.30 Echvi_2511 tryptophan synthase, alpha subunit — —

Not shown: 2 genomes with orthologs for Xcc-8004.4073.1 only; 5 genomes with orthologs for Xcc-8004.1967.1 only