Conservation of cofitness between Psyr_4197 and Psyr_3396 in Pseudomonas syringae pv. syringae B728a

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4197 DNA replication and repair protein RecN 1.0 Psyr_3396 DNA replication and repair protein RecR 0.40 11
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4197 DNA replication and repair protein RecN 1.00 Psyr_3396 DNA replication and repair protein RecR 0.46 18
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_1178 DNA repair protein RecN 0.91 Pf1N1B4_3864 Recombination protein RecR 0.43 3
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_5106 DNA repair protein RecN 0.91 PfGW456L13_4074 Recombination protein RecR 0.30 55
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_05660 DNA repair protein RecN 0.91 AO353_00675 recombination protein RecR 0.43 19
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3370 DNA repair protein RecN 0.92 Pf6N2E2_2325 Recombination protein RecR 0.69 3
Pseudomonas simiae WCS417 0.88 PS417_24070 recombination and repair protein 0.92 PS417_20800 recombination protein RecR 0.44 8
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS25910 DNA repair protein RecN 0.93 PFLU_RS22415 recombination protein RecR 0.26 29
Pseudomonas fluorescens SBW25 0.88 PFLU_RS25910 DNA repair protein RecN 0.93 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_07510 DNA repair protein RecN 0.92 AO356_02495 recombination protein RecR 0.74 8
Pseudomonas sp. RS175 0.85 PFR28_00071 DNA repair protein RecN 0.91 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas sp. S08-1 0.81 OH686_17050 DNA repair protein RecN 0.82 OH686_02385 recombination protein RecR low > 80
Pseudomonas putida KT2440 0.80 PP_4729 factor used in recombination and DNA repair 0.92 PP_4267 Recombination protein RecR low > 96
Pseudomonas stutzeri RCH2 0.77 Psest_0962 DNA repair protein RecN 0.85 Psest_2545 recombination protein RecR 0.59 7
Marinobacter adhaerens HP15 0.50 HP15_3084 DNA repair protein RecN 0.62 HP15_1883 recombination protein RecR — —
Shewanella amazonensis SB2B 0.44 Sama_1026 recombination and repair protein (RefSeq) 0.57 Sama_1312 recR recombination protein RecR (RefSeq) 0.61 10
Shewanella oneidensis MR-1 0.43 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.58 SO2015 recR recombination protein RecR (NCBI ptt file) 0.65 2
Serratia liquefaciens MT49 0.43 IAI46_19635 DNA repair protein RecN 0.62 IAI46_05240 recombination protein RecR 0.49 15
Shewanella sp. ANA-3 0.43 Shewana3_1104 recombination and repair protein (RefSeq) 0.58 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.71 8
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_04395 DNA repair protein RecN 0.58 CSW01_05375 recombination protein RecR 0.48 8
Shewanella loihica PV-4 0.43 Shew_1196 recombination and repair protein (RefSeq) 0.59 Shew_2233 recombination protein RecR (RefSeq) low > 60
Dickeya dadantii 3937 0.42 DDA3937_RS04325 DNA repair protein RecN 0.63 DDA3937_RS05790 recombination protein RecR low > 74
Pantoea sp. MT58 0.41 IAI47_04810 DNA repair protein RecN 0.61 IAI47_14465 recombination protein RecR low > 76
Rahnella sp. WP5 0.41 EX31_RS21760 DNA repair protein RecN 0.63 EX31_RS22525 recombination protein RecR low > 89
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0601 DNA replication and repair protein RecN 0.61 B158DRAFT_2480 DNA replication and repair protein RecR 0.59 16
Klebsiella michiganensis M5al 0.41 BWI76_RS21560 DNA repair protein RecN 0.62 BWI76_RS06830 recombination protein RecR low > 92
Dickeya dianthicola ME23 0.41 DZA65_RS04235 DNA repair protein RecN 0.62 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dianthicola 67-19 0.40 HGI48_RS04320 DNA repair protein RecN 0.62 HGI48_RS05840 recombination protein RecR — —
Pectobacterium carotovorum WPP14 0.40 HER17_RS17420 DNA repair protein RecN 0.62 HER17_RS15695 recombination mediator RecR 0.66 4
Escherichia coli ECRC101 0.40 MCAODC_11670 recN DNA repair protein RecN 0.63 MCAODC_27380 recR recombination mediator RecR low > 87
Escherichia coli ECRC102 0.40 NIAGMN_18915 recN DNA repair protein RecN 0.63 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC99 0.40 KEDOAH_07075 recN DNA repair protein RecN 0.63 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC100 0.40 OKFHMN_21145 recN DNA repair protein RecN 0.63 OKFHMN_08155 recR recombination mediator RecR low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF4162 DNA repair protein RecN 0.62 GFF4390 Recombination protein RecR 0.57 18
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01091 DNA repair protein RecN 0.63 OHPLBJKB_03202 Recombination protein RecR low > 73
Alteromonas macleodii MIT1002 0.40 MIT1002_01443 Recombination protein N 0.60 MIT1002_02649 Recombination protein RecR low > 70
Escherichia coli ECOR38 0.40 HEPCGN_20265 recN DNA repair protein RecN 0.63 HEPCGN_06770 recR recombination mediator RecR low > 87
Escherichia coli BW25113 0.40 b2616 recN recombination and repair protein (NCBI) 0.63 b0472 recR recombination protein RecR (NCBI) 0.52 7
Escherichia coli ECRC98 0.40 JDDGAC_24810 recN DNA repair protein RecN 0.63 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli BL21 0.40 ECD_02504 recombination and repair protein 0.63 ECD_00423 gap repair protein low > 61
Escherichia coli ECOR27 0.40 NOLOHH_12815 recN DNA repair protein RecN 0.63 NOLOHH_01085 recR recombination mediator RecR low > 75
Escherichia fergusonii Becca 0.40 EFB2_01277 DNA repair protein RecN 0.63 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC62 0.40 BNILDI_11620 recN DNA repair protein RecN 0.63 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli Nissle 1917 0.40 ECOLIN_RS14775 DNA repair protein RecN 0.63 ECOLIN_RS02805 recombination mediator RecR — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_2719 DNA repair protein RecN 0.62 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Enterobacter sp. TBS_079 0.39 MPMX20_03486 DNA repair protein RecN 0.62 MPMX20_01074 Recombination protein RecR low > 85
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.3431.1 DNA repair protein RecN 0.54 Xcc-8004.4012.1 Recombination protein RecR low > 74
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_07340 recN DNA repair protein RecN 0.58 OKGIIK_05655 recR recombination mediator RecR low > 52
Erwinia tracheiphila SCR3 0.38 LU632_RS16985 recN DNA repair protein RecN 0.61 LU632_RS18105 recR recombination mediator RecR low > 74
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS03060 DNA repair protein 0.49 HSERO_RS18355 recombinase RecR 0.38 8
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS05665 DNA repair protein RecN 0.57 ABZR86_RS06235 recombination mediator RecR 0.49 58
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS17960 DNA repair protein RecN 0.58 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS17815 DNA repair protein RecN 0.58 LRK55_RS01020 recombination mediator RecR low > 63
Lysobacter sp. OAE881 0.37 ABIE51_RS11655 DNA repair protein RecN 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.51 Dsui_1811 recombination protein RecR 0.91 3
Ralstonia solanacearum GMI1000 0.35 RS_RS13275 DNA repair protein RecN 0.48 RS_RS05980 recombination protein RecR low > 80
Ralstonia solanacearum PSI07 0.35 RPSI07_RS11890 DNA repair protein RecN 0.49 RPSI07_RS18205 recombination protein RecR low > 81
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS05415 DNA repair protein RecN 0.48 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.35 UW163_RS08210 DNA repair protein RecN 0.48 UW163_RS12640 recombination protein RecR — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3460 DNA repair protein RecN 0.43 Ac3H11_473 Recombination protein RecR low > 79
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01065 DNA repair protein RecN 0.51 ABZR87_RS10810 recombination mediator RecR low > 80
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS26535 DNA repair protein RecN 0.48 QEN71_RS22285 recombination mediator RecR 0.43 34
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS05910 DNA repair protein 0.52 RR42_RS13270 recombination protein RecR 0.62 7
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07470 DNA repair protein RecN 0.46 ABCV34_RS15480 recombination mediator RecR low > 48
Variovorax sp. SCN45 0.33 GFF2357 DNA repair protein RecN 0.50 GFF1110 Recombination protein RecR low > 127
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04692 DNA replication and repair protein RecN 0.49 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Paraburkholderia graminis OAS925 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.49 ABIE53_002048 recombination protein RecR 0.33 10
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.47 GFF4253 Recombination protein RecR low > 90
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.48 BPHYT_RS09070 recombination protein RecR low > 109
Acinetobacter radioresistens SK82 0.31 MPMX26_00239 DNA repair protein RecN 0.52 MPMX26_01643 Recombination protein RecR 0.43 4
Sinorhizobium meliloti 1021 0.30 SMc01877 DNA repair protein 0.36 SMc02908 recombination protein RecR 0.65 7
Agrobacterium fabrum C58 0.29 Atu2083 DNA repair protein RecN 0.38 Atu0093 Recombination protein 0.48 5
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.36 BT1081 recombination protein recR (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS10900 DNA repair protein RecN 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.36 AMB_RS20755 recombination protein RecR — —
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS02000 DNA repair protein RecN 0.33 HMPREF1078_RS07615 recombination mediator RecR low > 61
Azospirillum sp. SherDot2 0.28 MPMX19_01601 DNA repair protein RecN 0.36 MPMX19_02195 Recombination protein RecR 0.49 42
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS14500 DNA repair protein RecN 0.35 ABI39_RS14870 recombination protein RecR low > 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS06580 DNA repair protein RecN 0.38 ABZR88_RS10695 recombination mediator RecR low > 71
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS18225 DNA repair protein RecN 0.35 HMPREF1058_RS18560 recombination protein RecR low > 67
Azospirillum brasilense Sp245 0.27 AZOBR_RS12395 DNA repair protein RecN 0.38 AZOBR_RS03880 recombinase RecR — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.39 Echvi_1987 recombination protein RecR 0.67 14
Rhodopseudomonas palustris CGA009 0.27 TX73_018240 DNA repair protein RecN 0.38 TX73_003195 recombination mediator RecR — —
Bosea sp. OAE506 0.27 ABIE41_RS12645 DNA repair protein RecN 0.34 ABIE41_RS04035 recombination mediator RecR — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.27 CA264_13235 DNA repair protein RecN 0.38 CA264_01105 recombination protein RecR 0.55 18
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS14855 DNA repair protein RecN 0.36 CA265_RS04980 recombination protein RecR 0.78 7
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_1026 DNA repair protein RecN 0.38 Ga0059261_0645 DNA replication and repair protein RecR 0.30 27
Phaeobacter inhibens DSM 17395 0.26 PGA1_c09720 DNA repair protein RecN 0.33 PGA1_c30290 recombination protein RecR 0.50 5
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.40 Rru_A3471 RecR protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_2413 DNA repair protein RecN (RefSeq) 0.36 Dshi_0648 recombination protein RecR (RefSeq) 0.48 6
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.39 HUW76_08785 recombination protein RecR low > 35
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.37 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.37 CCNA_00270 Recombination protein recR 0.87 2
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_1779 recN DNA repair protein RecN 0.39 Synpcc7942_1369 recR recombination protein RecR — —
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.31 A4249_RS15115 recombination mediator RecR low > 48
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU2463 recN DNA repair protein RecN (TIGR) 0.29 DVU3200 recR recombination protein RecR (TIGR) low > 55
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.41 Rv3715c Probable recombination protein RecR low > 58
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_0923 SMC domain protein (RefSeq) 0.28 DvMF_2271 recombination protein RecR (RefSeq) low > 51
Bifidobacterium breve UCC2003 0.14 BBR_RS14030 DNA repair protein RecN 0.39 BBR_RS10990 recombination protein RecR 0.69 2

Not shown: 1 genomes with orthologs for Psyr_4197 only; 2 genomes with orthologs for Psyr_3396 only