Conservation of cofitness between PP_1216 and PP_1217 in Pseudomonas putida KT2440

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 1.0 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.57 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.87 Psyr_1410 Holliday junction DNA helicase RuvB 0.61 2
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.87 Psyr_1410 Holliday junction DNA helicase RuvB
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_03585 ATP-dependent DNA helicase RuvA 0.89 AO353_03580 ATP-dependent DNA helicase RuvB 0.30 8
Pseudomonas sp. S08-1 0.82 OH686_19130 Holliday junction DNA helicase RuvA 0.85 OH686_19135 Holliday junction DNA helicase RuvB
Pseudomonas sp. RS175 0.82 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.88 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB 0.50 1
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.89 PfGW456L13_1853 Holliday junction DNA helicase RuvB 0.53 4
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.89 Pf1N1B4_637 Holliday junction DNA helicase RuvB
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.88 Pf6N2E2_5537 Holliday junction DNA helicase RuvB
Pseudomonas simiae WCS417 0.81 PS417_22450 ATP-dependent DNA helicase RuvA 0.89 PS417_22445 ATP-dependent DNA helicase RuvB 0.37 3
Pseudomonas fluorescens SBW25 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB 0.63 1
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_18020 ATP-dependent DNA helicase RuvA 0.88 AO356_18025 ATP-dependent DNA helicase RuvB 0.63 1
Pseudomonas stutzeri RCH2 0.80 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.85 Psest_1497 Holliday junction DNA helicase, RuvB subunit
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_09245 Holliday junction branch migration protein RuvA 0.71 CSW01_09240 Holliday junction branch migration DNA helicase RuvB 0.83 5
Shewanella sp. ANA-3 0.56 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.71 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq)
Shewanella oneidensis MR-1 0.56 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.71 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) 0.44 7
Alteromonas macleodii MIT1002 0.55 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.72 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB
Rahnella sp. WP5 0.54 EX31_RS11675 Holliday junction branch migration protein RuvA 0.73 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB
Shewanella loihica PV-4 0.53 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.69 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq)
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.71 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB
Escherichia coli BL21 0.53 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.72 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome
Escherichia coli BW25113 0.53 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.72 b1860 ruvB Holliday junction DNA helicase B (NCBI) 0.53 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.72 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia fergusonii Becca 0.53 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.72 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia coli Nissle 1917 0.53 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.72 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB
Enterobacter sp. TBS_079 0.52 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.72 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB 0.32 28
Escherichia coli ECRC101 0.52 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.72 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC62 0.52 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.72 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC101 0.52 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.72 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR38 0.52 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.72 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC99 0.52 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.72 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR27 0.52 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.72 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC98 0.52 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.72 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB
Shewanella amazonensis SB2B 0.52 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.69 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq)
Escherichia coli ECRC102 0.52 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.72 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB
Klebsiella michiganensis M5al 0.52 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.72 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.71 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB 0.87 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1640 Holliday junction DNA helicase RuvA 0.71 GFF1639 Holliday junction DNA helicase RuvB
Pantoea sp. MT58 0.51 IAI47_08445 Holliday junction branch migration protein RuvA 0.74 IAI47_08450 Holliday junction branch migration DNA helicase RuvB 0.36 2
Erwinia tracheiphila SCR3 0.51 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.72 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB
Marinobacter adhaerens HP15 0.51 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.76 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB
Dickeya dadantii 3937 0.50 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.73 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB
Pectobacterium carotovorum WPP14 0.50 HER17_RS11845 Holliday junction branch migration protein RuvA 0.73 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB
Serratia liquefaciens MT49 0.48 IAI46_14625 Holliday junction branch migration protein RuvA 0.74 IAI46_14620 Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola 67-19 0.48 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.73 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola ME23 0.48 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.73 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB
Acinetobacter radioresistens SK82 0.45 MPMX26_02185 Holliday junction ATP-dependent DNA helicase RuvA 0.69 MPMX26_02186 Holliday junction ATP-dependent DNA helicase RuvB 0.67 2
Lysobacter sp. OAE881 0.45 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.69 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.68 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB
Dechlorosoma suillum PS 0.45 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.70 Dsui_0484 Holliday junction DNA helicase, RuvB subunit
Variovorax sp. SCN45 0.44 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.67 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) low > 127
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.67 ABCV34_RS07990 Holliday junction branch migration DNA helicase RuvB
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.67 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.67 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB
Variovorax sp. OAS795 0.44 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.67 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.69 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.68 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB 0.51 32
Paraburkholderia graminis OAS925 0.43 ABIE53_003494 Holliday junction DNA helicase RuvA 0.68 ABIE53_003495 Holliday junction DNA helicase RuvB 0.54 1
Ralstonia solanacearum GMI1000 0.42 RS_RS02490 Holliday junction branch migration protein RuvA 0.69 RS_RS02485 Holliday junction branch migration DNA helicase RuvB
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1666 Holliday junction DNA helicase RuvA 0.68 GFF1665 Holliday junction DNA helicase RuvB
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.68 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.68 RALBFv3_RS11665 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum UW163 0.42 UW163_RS01915 Holliday junction branch migration protein RuvA 0.68 UW163_RS01920 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum PSI07 0.42 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.69 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.67 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.69 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB 0.45 1
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02705 Holliday junction DNA helicase RuvA 0.69 RR42_RS02700 ATP-dependent DNA helicase RuvB
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.68 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.68 HSERO_RS02095 Holliday junction DNA helicase RuvB low > 78
Acidovorax sp. GW101-3H11 0.40 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.67 Ac3H11_4685 Holliday junction DNA helicase RuvB
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_14545 Holliday junction branch migration protein RuvA 0.57 CA264_19800 Holliday junction branch migration DNA helicase RuvB
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.54 Synpcc7942_0835 ruvB Holliday junction DNA helicase B
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.57 Echvi_0825 Holliday junction DNA helicase, RuvB subunit 0.28 50
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.55 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.57 Ga0059261_0819 Holliday junction DNA helicase subunit RuvB
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00691 Holliday junction DNA helicase RuvA 0.56 BACOVA_00895 Holliday junction DNA helicase RuvB
Azospirillum brasilense Sp245 0.30 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.58 AZOBR_RS09050 Holliday junction DNA helicase RuvB
Azospirillum sp. SherDot2 0.30 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.59 MPMX19_00698 Holliday junction ATP-dependent DNA helicase RuvB
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.55 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Magnetospirillum magneticum AMB-1 0.30 AMB_RS16255 Holliday junction branch migration protein RuvA 0.59 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB
Rhodopseudomonas palustris CGA009 0.30 TX73_005655 Holliday junction branch migration protein RuvA 0.59 TX73_005665 Holliday junction branch migration DNA helicase RuvB
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.57 ABZR88_RS07990 Holliday junction branch migration DNA helicase RuvB
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.56 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file)
Bosea sp. OAE506 0.29 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.59 ABIE41_RS09480 Holliday junction branch migration DNA helicase RuvB
Rhodospirillum rubrum S1H 0.28 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.61 Rru_A1089 Holliday junction DNA helicase RuvB (NCBI)
Agrobacterium fabrum C58 0.28 Atu3723 Holliday junction DNA helicase RuvA 0.57 Atu3722 Holliday junction DNA helicase RuvB
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS18995 Holliday junction branch migration protein RuvA 0.57 CA265_RS07710 Holliday junction branch migration DNA helicase RuvB 0.56 5
Bifidobacterium breve UCC2003 0.27 BBR_RS15655 Holliday junction branch migration protein RuvA 0.48 BBR_RS15660 Holliday junction branch migration DNA helicase RuvB 0.75 5
Rhizobium sp. OAE497 0.27 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.57 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB 0.47 3
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.55 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15860 Holliday junction branch migration protein RuvA 0.57 A4249_RS15865 Holliday junction branch migration DNA helicase RuvB
Dinoroseobacter shibae DFL-12 0.27 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.57 Dshi_1105 Holliday junction DNA helicase RuvB (RefSeq)
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.55 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB 0.62 22
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU2256 ruvA Holliday junction DNA helicase RuvA (TIGR) 0.56 DVU2255 ruvB Holliday junction DNA helicase RuvB (TIGR) 0.48 14
Sinorhizobium meliloti 1021 0.26 SMc03966 Holliday junction DNA helicase RuvA 0.59 SMc03965 Holliday junction DNA helicase RuvB
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.58 DvMF_3205 ruvB Holliday junction DNA helicase RuvB (RefSeq) 0.61 2
Mycobacterium tuberculosis H37Rv 0.25 Rv2593c Probable holliday junction DNA helicase RuvA 0.53 Rv2592c Probable holliday junction DNA helicase RuvB
Phaeobacter inhibens DSM 17395 0.24 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.57 PGA1_c05870 holliday junction ATP-dependent DNA helicase RuvB 0.52 1
Fusobacterium nucleatum SB010 0.24 HUW76_06655 Holliday junction branch migration protein RuvA 0.56 HUW76_04170 Holliday junction branch migration DNA helicase RuvB 1.00 1
Caulobacter crescentus NA1000 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.57 CCNA_03344 Holliday junction DNA helicase RuvB 0.42 8
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_03345 Holliday junction DNA helicase RuvA 0.57 CCNA_03344 Holliday junction DNA helicase RuvB

Not shown: 0 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_1217 only