Conservation of cofitness between PP_0363 and PP_0082 in Pseudomonas putida KT2440

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0363 8-amino-7-oxononanoate synthase 1.0 PP_0082 tryptophan synthase alpha chain 0.50 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4686 8-amino-7-oxononanoate synthase 0.90 Psyr_0033 tryptophan synthase, alpha chain low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4686 8-amino-7-oxononanoate synthase 0.90 Psyr_0033 tryptophan synthase, alpha chain low > 86
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_1148 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.82 PfGW456L13_565 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.65 66
Pseudomonas sp. RS175 0.84 PFR28_04102 8-amino-7-oxononanoate synthase 0.78 PFR28_04716 Tryptophan synthase alpha chain
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_07520 8-amino-7-oxononanoate synthase 0.80 AO353_10705 tryptophan synthase subunit alpha 0.60 40
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_4761 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.80 Pf6N2E2_4047 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.56 14
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_2488 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.79 Pf1N1B4_1830 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.63 8
Pseudomonas fluorescens SBW25 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.81 PFLU_RS00175 tryptophan synthase subunit alpha low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS27645 8-amino-7-oxononanoate synthase 0.81 PFLU_RS00175 tryptophan synthase subunit alpha low > 109
Pseudomonas simiae WCS417 0.82 PS417_26000 8-amino-7-oxononanoate synthase 0.81 PS417_00180 tryptophan synthase subunit alpha low > 88
Pseudomonas stutzeri RCH2 0.82 Psest_0412 8-amino-7-oxononanoate synthase 0.76 Psest_0062 tryptophan synthase, alpha subunit 0.42 49
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_14140 8-amino-7-oxononanoate synthase 0.80 AO356_10910 tryptophan synthase subunit alpha 0.48 12
Pseudomonas sp. S08-1 0.81 OH686_10350 8-amino-7-oxononanoate synthase 0.79 OH686_12430 tryptophan synthase, alpha subunit low > 80
Marinobacter adhaerens HP15 0.56 HP15_2485 8-amino-7-oxononanoate synthase 0.45 HP15_1826 tryptophan synthase, alpha subunit
Dechlorosoma suillum PS 0.49 Dsui_2881 8-amino-7-oxononanoate synthase 0.45 Dsui_3191 tryptophan synthase, alpha subunit
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0865 8-amino-7-oxononanoate synthase 0.25 B158DRAFT_2430 tryptophan synthase, alpha chain (EC 4.2.1.20)
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS15835 8-amino-7-oxononanoate synthase 0.41 ABZR86_RS07995 tryptophan synthase subunit alpha 0.47 21
Rhodanobacter denitrificans MT42 0.46 LRK55_RS09895 8-amino-7-oxononanoate synthase 0.40 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS10255 8-amino-7-oxononanoate synthase 0.40 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) low > 59
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_13655 bioF 8-amino-7-oxononanoate synthase 0.40 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Lysobacter sp. OAE881 0.42 ABIE51_RS01145 8-amino-7-oxononanoate synthase 0.39 ABIE51_RS08265 tryptophan synthase subunit alpha low > 62
Enterobacter sp. TBS_079 0.42 MPMX20_01404 8-amino-7-oxononanoate synthase 0.29 MPMX20_02514 Tryptophan synthase alpha chain low > 85
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.504.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.36 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.61 20
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2215 8-amino-7-oxononanoate synthase 0.29 EX28DRAFT_0932 tryptophan synthase, alpha chain (EC 4.2.1.20) low > 76
Dickeya dianthicola 67-19 0.40 HGI48_RS08680 8-amino-7-oxononanoate synthase 0.29 HGI48_RS10460 tryptophan synthase subunit alpha low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS08970 8-amino-7-oxononanoate synthase 0.29 DZA65_RS10940 tryptophan synthase subunit alpha low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS08515 8-amino-7-oxononanoate synthase 0.28 DDA3937_RS10460 tryptophan synthase subunit alpha low > 74
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS12245 8-amino-7-oxononanoate synthase 0.45 HSERO_RS16470 tryptophan synthase subunit alpha low > 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF672 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.29 GFF2726 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 78
Pectobacterium carotovorum WPP14 0.38 HER17_RS13455 8-amino-7-oxononanoate synthase 0.27 HER17_RS10940 tryptophan synthase subunit alpha low > 75
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_05650 8-amino-7-oxononanoate synthase 0.28 CSW01_05925 tryptophan synthase subunit alpha low > 62
Erwinia tracheiphila SCR3 0.38 LU632_RS09135 bioF 8-amino-7-oxononanoate synthase 0.26 LU632_RS12775 trpA tryptophan synthase subunit alpha
Rahnella sp. WP5 0.37 EX31_RS23700 8-amino-7-oxononanoate synthase 0.28 EX31_RS09980 tryptophan synthase subunit alpha low > 89
Escherichia coli Nissle 1917 0.37 ECOLIN_RS04135 8-amino-7-oxononanoate synthase 0.29 ECOLIN_RS07595 tryptophan synthase subunit alpha
Escherichia fergusonii Becca 0.37 EFB2_03329 8-amino-7-oxononanoate synthase 0.29 EFB2_02666 Tryptophan synthase alpha chain low > 86
Paraburkholderia graminis OAS925 0.37 ABIE53_000579 8-amino-7-oxononanoate synthase 0.42 ABIE53_004811 tryptophan synthase alpha chain low > 113
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02095 8-amino-7-oxononanoate synthase 0.39 H281DRAFT_06065 tryptophan synthase, alpha chain low > 103
Escherichia coli ECRC101 0.37 MCAODC_25610 bioF 8-amino-7-oxononanoate synthase 0.30 MCAODC_15590 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC101 0.37 OKFHMN_06395 bioF 8-amino-7-oxononanoate synthase 0.30 OKFHMN_02675 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC102 0.37 NIAGMN_04440 bioF 8-amino-7-oxononanoate synthase 0.30 NIAGMN_26845 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC62 0.37 BNILDI_21035 bioF 8-amino-7-oxononanoate synthase 0.30 BNILDI_18480 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC98 0.37 JDDGAC_10030 bioF 8-amino-7-oxononanoate synthase 0.30 JDDGAC_05220 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC99 0.37 KEDOAH_21515 bioF 8-amino-7-oxononanoate synthase 0.30 KEDOAH_26075 trpA tryptophan synthase subunit alpha
Escherichia coli BL21 0.36 ECD_00743 8-amino-7-oxononanoate synthase 0.30 ECD_01234 tryptophan synthase, alpha subunit
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_02937 8-amino-7-oxononanoate synthase 0.30 OHPLBJKB_02423 Tryptophan synthase alpha chain low > 73
Escherichia coli BW25113 0.36 b0776 bioF 8-amino-7-oxononanoate synthase (NCBI) 0.30 b1260 trpA tryptophan synthase subunit alpha (NCBI) low > 76
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01095 8-amino-7-oxononanoate synthase 0.39 QEN71_RS17655 tryptophan synthase subunit alpha
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3995 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.42 GFF3354 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 90
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02160 8-amino-7-oxononanoate synthase 0.40 BPHYT_RS33865 tryptophan synthase alpha chain low > 109
Escherichia coli ECOR27 0.36 NOLOHH_22765 bioF 8-amino-7-oxononanoate synthase 0.30 NOLOHH_20335 trpA tryptophan synthase subunit alpha
Escherichia coli ECOR38 0.36 HEPCGN_01645 bioF 8-amino-7-oxononanoate synthase 0.29 HEPCGN_25515 trpA tryptophan synthase subunit alpha low > 85
Serratia liquefaciens MT49 0.36 IAI46_06530 8-amino-7-oxononanoate synthase 0.29 IAI46_14045 tryptophan synthase subunit alpha low > 86
Alteromonas macleodii MIT1002 0.36 MIT1002_01380 8-amino-7-oxononanoate synthase 0.29 MIT1002_01425 Tryptophan synthase alpha chain
Acidovorax sp. GW101-3H11 0.36 Ac3H11_3830 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.43 Ac3H11_1535 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 79
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00820 8-amino-7-oxononanoate synthase 0.42 RALBFv3_RS02575 tryptophan synthase subunit alpha
Ralstonia solanacearum UW163 0.35 UW163_RS14155 8-amino-7-oxononanoate synthase 0.42 UW163_RS11150 tryptophan synthase subunit alpha
Shewanella oneidensis MR-1 0.35 SO2739 bioF 8-amino-7-oxononanoate synthase (NCBI ptt file) 0.31 SO3024 trpA tryptophan synthase, alpha subunit (NCBI ptt file) low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS07435 8-amino-7-oxononanoate synthase 0.43 RS_RS09955 tryptophan synthase subunit alpha low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS00930 8-amino-7-oxononanoate synthase 0.42 RR42_RS14350 tryptophan synthase alpha chain
Variovorax sp. OAS795 0.35 ABID97_RS16260 8-amino-7-oxononanoate synthase 0.40 ABID97_RS08425 tryptophan synthase subunit alpha low > 91
Klebsiella michiganensis M5al 0.35 BWI76_RS08765 8-amino-7-oxononanoate synthase 0.29 BWI76_RS11840 tryptophan synthase subunit alpha low > 92
Ralstonia solanacearum PSI07 0.35 RPSI07_RS16700 8-amino-7-oxononanoate synthase 0.43 RPSI07_RS14740 tryptophan synthase subunit alpha
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS12340 8-amino-7-oxononanoate synthase 0.43 ABZR87_RS14490 tryptophan synthase subunit alpha low > 80
Shewanella loihica PV-4 0.35 Shew_1720 8-amino-7-oxononanoate synthase (RefSeq) 0.29 Shew_2256 trpA tryptophan synthase subunit alpha (RefSeq)
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_07040 8-amino-7-oxononanoate synthase 0.28 CA264_05085 tryptophan synthase subunit alpha low > 74
Shewanella sp. ANA-3 0.34 Shewana3_2518 aminotransferase, class I and II (RefSeq) 0.31 Shewana3_1515 trpA tryptophan synthase subunit alpha (RefSeq)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS03035 pyridoxal phosphate-dependent aminotransferase family protein 0.27 ABZR88_RS10660 tryptophan synthase subunit alpha
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS13580 8-amino-7-oxononanoate synthase 0.27 CA265_RS05025 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data)
Pantoea sp. MT58 0.33 IAI47_13525 8-amino-7-oxononanoate synthase 0.28 IAI47_09165 tryptophan synthase subunit alpha low > 76
Phocaeicola vulgatus CL09T03C04 0.33 HMPREF1058_RS01195 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.26 HMPREF1058_RS07200 tryptophan synthase subunit alpha
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS16535 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.26 ABI39_RS21075 tryptophan synthase subunit alpha
Variovorax sp. SCN45 0.32 GFF144 8-amino-7-oxononanoate synthase (EC 2.3.1.47) 0.41 GFF3882 Tryptophan synthase alpha chain (EC 4.2.1.20)
Sinorhizobium meliloti 1021 0.32 SMc01565 2-amino-3-ketobutyrate CoA ligase 0.58 SMc02765 tryptophan synthase subunit alpha 0.49 55
Rhizobium sp. OAE497 0.32 ABIE40_RS12730 glycine C-acetyltransferase 0.57 ABIE40_RS19340 tryptophan synthase subunit alpha
Shewanella amazonensis SB2B 0.32 Sama_0098 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) 0.29 Sama_2134 trpA tryptophan synthase subunit alpha (RefSeq) low > 62
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS16170 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.26 HMPREF1078_RS00120 tryptophan synthase subunit alpha
Castellaniella sp019104865 MT123 0.31 ABCV34_RS15295 8-amino-7-oxononanoate synthase 0.39 ABCV34_RS08430 tryptophan synthase subunit alpha
Methanococcus maripaludis S2 0.31 MMP_RS08100 8-amino-7-oxononanoate synthase 0.33 MMP_RS05185 tryptophan synthase subunit alpha
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS14215 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.26 HMPREF1181_RS15350 tryptophan synthase subunit alpha
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_0145 2-amino-3-ketobutyrate coenzyme A ligase 0.29 Echvi_2511 tryptophan synthase, alpha subunit
Azospirillum brasilense Sp245 0.30 AZOBR_RS31105 8-amino-7-oxononanoate synthase 0.59 AZOBR_RS00520 tryptophan synthase subunit alpha low > 97
Phaeobacter inhibens DSM 17395 0.30 PGA1_c34330 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (from data) 0.62 PGA1_c04930 tryptophan synthase alpha chain
Methanococcus maripaludis JJ 0.30 MMJJ_RS06265 8-amino-7-oxononanoate synthase 0.33 MMJJ_RS09195 tryptophan synthase subunit alpha
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_0027 bioF 8-amino-7-oxononanoate synthase 0.36 Synpcc7942_0411 trpA tryptophan synthase subunit alpha
Bacteroides ovatus ATCC 8483 0.29 BACOVA_02588 putative 8-amino-7-oxononanoate synthase 0.29 BACOVA_03785 tryptophan synthase, alpha subunit
Bacteroides thetaiotaomicron VPI-5482 0.29 BT1371 2-amino-3-ketobutyrate coenzyme A ligase (NCBI ptt file) 0.28 BT0527 tryptophan synthase alpha chain (NCBI ptt file) low > 81
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_01647 8-amino-7-oxononanoate synthase 0.50 CCNA_03657 tryptophan synthase alpha chain low > 67
Caulobacter crescentus NA1000 0.28 CCNA_01647 8-amino-7-oxononanoate synthase 0.50 CCNA_03657 tryptophan synthase alpha chain low > 66
Magnetospirillum magneticum AMB-1 0.28 AMB_RS13875 8-amino-7-oxononanoate synthase 0.59 AMB_RS20300 tryptophan synthase subunit alpha
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS02505 glycine C-acetyltransferase 0.49 A4249_RS11320 tryptophan synthase subunit alpha
Rhodopseudomonas palustris CGA009 0.28 TX73_007985 5-aminolevulinate synthase 0.62 TX73_000365 tryptophan synthase subunit alpha
Dinoroseobacter shibae DFL-12 0.27 Dshi_3546 5-aminolevulinic acid synthase (RefSeq) 0.60 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq)
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_3508 7-keto-8-aminopelargonate synthetase and related enzymes 0.46 Ga0059261_0239 tryptophan synthase, alpha chain (EC 4.2.1.20)
Bosea sp. OAE506 0.27 ABIE41_RS04425 5-aminolevulinate synthase 0.62 ABIE41_RS03930 tryptophan synthase subunit alpha
Azospirillum sp. SherDot2 0.27 MPMX19_02203 5-aminolevulinate synthase 0.59 MPMX19_02737 Tryptophan synthase alpha chain
Rhodospirillum rubrum S1H 0.26 Rru_A1146 5-aminolevulinic acid synthase (NCBI) 0.53 Rru_A3428 Tryptophan synthase (NCBI) low > 58
Acinetobacter radioresistens SK82 0.26 MPMX26_02453 8-amino-7-oxononanoate synthase 2 0.43 MPMX26_02611 Tryptophan synthase alpha chain
Agrobacterium fabrum C58 0.25 Atu2613 5-aminolevulinate synthase 0.57 Atu0019 tryptophan synthase alpha subunit
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2564 bioF 8-amino-7-oxononanoate synthase (Dmitry Rodionov) 0.32 DVU0471 trpA tryptophan synthase, alpha subunit (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_1008 aminotransferase class I and II (RefSeq) 0.33 DvMF_1740 trpA tryptophan synthase subunit alpha (RefSeq) low > 51

Not shown: 1 genomes with orthologs for PP_0363 only; 2 genomes with orthologs for PP_0082 only