Conservation of cofitness between HER17_RS04700 and HER17_RS03075 in Pectobacterium carotovorum WPP14

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04700 glutamate 5-kinase 1.0 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.92 7
Rahnella sp. WP5 0.90 EX31_RS20980 glutamate 5-kinase 0.91 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.97 10
Serratia liquefaciens MT49 0.90 IAI46_04430 glutamate 5-kinase 0.89 IAI46_03345 3-isopropylmalate dehydratase large subunit low > 86
Enterobacter sp. TBS_079 0.89 MPMX20_00927 Glutamate 5-kinase 0.86 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.90 29
Klebsiella michiganensis M5al 0.89 BWI76_RS05840 glutamate 5-kinase 0.84 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.89 10
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2651 glutamate 5-kinase 0.87 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.86 16
Pantoea sp. MT58 0.89 IAI47_15120 glutamate 5-kinase 0.87 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.90 26
Dickeya dianthicola 67-19 0.89 HGI48_RS16605 glutamate 5-kinase 0.89 HGI48_RS18065 3-isopropylmalate dehydratase large subunit low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4114 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.86 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia coli ECRC102 0.88 NIAGMN_07535 proB Glutamate 5-kinase 0.85 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli BW25113 0.88 b0242 proB gamma-glutamyl kinase (NCBI) 0.85 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.95 9
Escherichia fergusonii Becca 0.88 EFB2_03778 Glutamate 5-kinase 0.85 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR38 0.88 HEPCGN_07780 proB Glutamate 5-kinase 0.85 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.96 7
Dickeya dianthicola ME23 0.88 DZA65_RS17695 glutamate 5-kinase 0.89 DZA65_RS19210 3-isopropylmalate dehydratase large subunit low > 75
Escherichia coli ECRC99 0.88 KEDOAH_18480 proB Glutamate 5-kinase 0.85 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECOR27 0.88 NOLOHH_02050 proB Glutamate 5-kinase 0.85 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.96 14
Escherichia coli ECRC98 0.88 JDDGAC_13300 proB Glutamate 5-kinase 0.85 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.82 42
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03398 Glutamate 5-kinase 0.85 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Erwinia tracheiphila SCR3 0.88 LU632_RS01185 proB glutamate 5-kinase 0.78 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit low > 74
Escherichia coli BL21 0.88 ECD_00239 gamma-glutamate kinase 0.85 ECD_00074 3-isopropylmalate dehydratase large subunit 0.89 16
Escherichia coli ECRC100 0.88 OKFHMN_09675 proB Glutamate 5-kinase 0.85 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.96 14
Escherichia coli Nissle 1917 0.88 ECOLIN_RS01825 glutamate 5-kinase 0.85 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.88 17
Escherichia coli ECRC101 0.88 MCAODC_00195 proB Glutamate 5-kinase 0.85 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.88 25
Escherichia coli ECRC62 0.88 BNILDI_00245 proB Glutamate 5-kinase 0.85 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.97 14
Dickeya dadantii 3937 0.88 DDA3937_RS16535 glutamate 5-kinase 0.89 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit low > 74
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_11575 glutamate 5-kinase 0.78 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Shewanella loihica PV-4 0.62 Shew_2848 gamma-glutamyl kinase (RefSeq) 0.70 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.99 8
Shewanella amazonensis SB2B 0.62 Sama_2516 gamma-glutamyl kinase (RefSeq) 0.69 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.93 26
Shewanella sp. ANA-3 0.59 Shewana3_0954 gamma-glutamyl kinase (RefSeq) 0.70 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.95 13
Shewanella oneidensis MR-1 0.59 SO1121 proB glutamate 5-kinase (NCBI ptt file) 0.70 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.98 14
Dechlorosoma suillum PS 0.40 Dsui_0166 glutamate 5-kinase 0.58 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Pseudomonas fluorescens SBW25 0.39 PFLU_RS25360 glutamate 5-kinase 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.57 16
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS25360 glutamate 5-kinase 0.62 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.53 21
Pseudomonas simiae WCS417 0.39 PS417_23545 gamma-glutamyl kinase 0.62 PS417_18600 isopropylmalate isomerase 0.65 19
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.62 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_14115 gamma-glutamyl kinase 0.63 AO353_20620 isopropylmalate isomerase 0.77 13
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0704 glutamate 5-kinase 0.62 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.87 12
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0704 glutamate 5-kinase 0.62 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.88 13
Paraburkholderia graminis OAS925 0.37 ABIE53_003588 glutamate 5-kinase 0.61 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.81 3
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS17110 glutamate 5-kinase 0.61 BPHYT_RS33915 isopropylmalate isomerase
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1472 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.62 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 9
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_06264 glutamate 5-kinase 0.61 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.52 27
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS27270 glutamate 5-kinase 0.61 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.84 51
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_5103 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.62 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 103
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS06145 glutamate 5-kinase 0.60 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.75 4
Ralstonia solanacearum UW163 0.36 UW163_RS07480 glutamate 5-kinase 0.60 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_15815 gamma-glutamyl kinase 0.62 AO356_21400 isopropylmalate isomerase 0.66 24
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_2197 proB gamma-glutamyl kinase 0.53 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Pseudomonas putida KT2440 0.36 PP_0691 Glutamate 5-kinase 0.62 PP_1985 3-isopropylmalate dehydratase large subunit 0.39 25
Variovorax sp. OAS795 0.36 ABID97_RS23400 glutamate 5-kinase 0.59 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS01815 gamma-glutamyl kinase 0.61 HSERO_RS16515 isopropylmalate isomerase 0.87 6
Pseudomonas sp. RS175 0.36 PFR28_03769 Glutamate 5-kinase 0.62 PFR28_02824 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.36 AZOBR_RS04095 glutamate 5-kinase 0.65 AZOBR_RS03545 isopropylmalate isomerase
Pseudomonas sp. S08-1 0.36 OH686_16305 Glutamate 5-kinase / RNA-binding C-terminal domain PUA 0.62 OH686_04480 3-isopropylmalate dehydratase large subunit 0.61 64
Azospirillum sp. SherDot2 0.36 MPMX19_01933 Glutamate 5-kinase 0.65 MPMX19_01998 3-isopropylmalate dehydratase large subunit
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS17940 gamma-glutamyl kinase 0.60 RR42_RS14400 isopropylmalate isomerase low > 128
Ralstonia solanacearum PSI07 0.35 RPSI07_RS11095 glutamate 5-kinase 0.61 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.55 58
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01810 glutamate 5-kinase 0.61 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.81 16
Ralstonia solanacearum GMI1000 0.35 RS_RS14095 glutamate 5-kinase 0.60 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.30 44
Castellaniella sp019104865 MT123 0.35 ABCV34_RS10800 glutamate 5-kinase 0.62 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.45 12
Pseudomonas stutzeri RCH2 0.35 Psest_3384 glutamate 5-kinase 0.62 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.79 16
Dinoroseobacter shibae DFL-12 0.35 Dshi_1467 glutamate 5-kinase (RefSeq) 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Rhizobium sp. OAE497 0.34 ABIE40_RS18920 glutamate 5-kinase 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.91 8
Magnetospirillum magneticum AMB-1 0.34 AMB_RS20630 glutamate 5-kinase 0.63 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4771 Glutamate 5-kinase (EC 2.7.2.11) 0.60 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.84 13
Agrobacterium fabrum C58 0.34 Atu2780 gamma-glutamyl kinase 0.63 Atu2709 3-isopropylmalate dehydratase, large subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF1274 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.60 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 90
Rhodopseudomonas palustris CGA009 0.34 TX73_000850 glutamate 5-kinase 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit
Sinorhizobium meliloti 1021 0.34 SMc03776 gamma-glutamyl kinase 0.64 SMc03823 isopropylmalate isomerase large subunit 0.90 14
Acinetobacter radioresistens SK82 0.34 MPMX26_02135 Glutamate 5-kinase 0.59 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.74 36
Caulobacter crescentus NA1000 0.33 CCNA_00316 glutamate 5-kinase 0.60 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.89 31
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00316 glutamate 5-kinase 0.60 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_1377 gamma-glutamyl kinase (RefSeq) 0.22 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.95 12
Alteromonas macleodii MIT1002 0.33 MIT1002_04056 Glutamate 5-kinase 0.68 MIT1002_00947 3-isopropylmalate dehydratase large subunit low > 70
Rhodospirillum rubrum S1H 0.33 Rru_A1239 Glutamate 5-kinase, ProB-related (NCBI) 0.66 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.74 10
Marinobacter adhaerens HP15 0.33 HP15_508 gamma-glutamyl kinase 0.61 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain
Variovorax sp. SCN45 0.33 GFF2515 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.59 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0930 proB glutamate 5-kinase (TIGR) 0.21 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.87 11
Bifidobacterium breve UCC2003 0.31 BBR_RS19445 glutamate 5-kinase 0.54 BBR_RS19630 3-isopropylmalate dehydratase large subunit low > 34
Bosea sp. OAE506 0.31 ABIE41_RS07585 glutamate 5-kinase 0.62 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Phaeobacter inhibens DSM 17395 0.31 PGA1_c15510 glutamate 5-kinase ProB 0.60 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.80 16
Rhodanobacter denitrificans MT42 0.30 LRK55_RS02130 glutamate 5-kinase 0.54 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS02375 glutamate 5-kinase 0.54 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2326.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA 0.62 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.54 62
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_09420 proB glutamate 5-kinase 0.50 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS16125 glutamate 5-kinase 0.50 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.99 11
Mycobacterium tuberculosis H37Rv 0.29 Rv2439c Probable glutamate 5-kinase protein ProB (gamma-glutamyl kinase) (GK) 0.59 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Lysobacter sp. OAE881 0.28 ABIE51_RS13370 glutamate 5-kinase 0.49 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.28 Echvi_4033 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.52 Echvi_2059 3-isopropylmalate dehydratase, large subunit low > 79
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS08685 glutamate 5-kinase 0.51 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.83 55
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS22170 glutamate 5-kinase 0.57 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS20855 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.57 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.91 28
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS10650 glutamate 5-kinase 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.95 40
Bacteroides ovatus ATCC 8483 0.26 BACOVA_03537 glutamate 5-kinase 0.52 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.96 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_07725 glutamate 5-kinase 0.55 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3719 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.51 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.84 32
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS03325 glutamate 5-kinase 0.51 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.93 26
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS08650 glutamate 5-kinase 0.50 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.86 31
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS02880 glutamate 5-kinase 0.51 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.85 20
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3512 glutamate 5-kinase (EC 2.7.2.11) (from data) 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.92 3

Not shown: 0 genomes with orthologs for HER17_RS04700 only; 3 genomes with orthologs for HER17_RS03075 only