Conservation of cofitness between PS417_18585 and PS417_18600 in Pseudomonas simiae WCS417

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_18585 3-isopropylmalate dehydrogenase 1.0 PS417_18600 isopropylmalate isomerase 0.94 3
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.99 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.97 1
Pseudomonas fluorescens SBW25 0.99 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.99 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.92 2
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.94 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.89 15
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_21415 3-isopropylmalate dehydrogenase 0.94 AO356_21400 isopropylmalate isomerase 0.97 2
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.94 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 3
Pseudomonas sp. RS175 0.95 PFR28_02821 3-isopropylmalate dehydrogenase 0.93 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.89 1
Pseudomonas fluorescens GW456-L13 0.95 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.94 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.99 2
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_1985 3-isopropylmalate dehydrogenase 0.92 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.97 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_1985 3-isopropylmalate dehydrogenase 0.92 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.96 2
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_20635 3-isopropylmalate dehydrogenase 0.94 AO353_20620 isopropylmalate isomerase 0.98 4
Pseudomonas putida KT2440 0.93 PP_1988 3-isopropylmalate dehydrogenase 0.90 PP_1985 3-isopropylmalate dehydratase large subunit 0.94 1
Pseudomonas sp. S08-1 0.88 OH686_04470 3-isopropylmalate dehydrogenase 0.88 OH686_04480 3-isopropylmalate dehydratase large subunit 0.89 10
Pseudomonas stutzeri RCH2 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.86 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.95 1
Xanthomonas campestris pv. campestris strain 8004 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.86 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.97 2
Acinetobacter radioresistens SK82 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 0.74 MPMX26_00345 3-isopropylmalate dehydratase large subunit 1.00 1
Marinobacter adhaerens HP15 0.71 HP15_1832 3-isopropylmalate dehydrogenase 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.97 1
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.78 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.97 1
Dechlorosoma suillum PS 0.69 Dsui_3198 3-isopropylmalate dehydrogenase 0.67 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.71 HSERO_RS16515 isopropylmalate isomerase 0.96 2
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.72 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.93 6
Variovorax sp. OAS795 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.70 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.72 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.88 1
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.73 RR42_RS14400 isopropylmalate isomerase 0.96 1
Paraburkholderia graminis OAS925 0.64 ABIE53_004804 3-isopropylmalate dehydrogenase 0.72 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.97 2
Variovorax sp. SCN45 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.70 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.71 1
Ralstonia solanacearum GMI1000 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.72 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.42 36
Ralstonia solanacearum UW163 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase 0.72 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.72 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.66 3
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.97 2
Castellaniella sp019104865 MT123 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.74 1
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.72 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.80 4
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.69 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 2
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.72 BPHYT_RS33915 isopropylmalate isomerase 0.97 1
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.72 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.93 1
Phaeobacter inhibens DSM 17395 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.60 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.98 1
Dinoroseobacter shibae DFL-12 0.59 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Sinorhizobium meliloti 1021 0.59 SMc04405 3-isopropylmalate dehydrogenase 0.65 SMc03823 isopropylmalate isomerase large subunit 0.99 2
Agrobacterium fabrum C58 0.59 Atu2791 3-isopropylmalate dehydrogenase 0.63 Atu2709 3-isopropylmalate dehydratase, large subunit 0.99 1
Rhizobium sp. OAE497 0.59 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.62 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.99 1
Azospirillum sp. SherDot2 0.59 MPMX19_00607 3-isopropylmalate dehydrogenase 0.67 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.93 6
Rhodospirillum rubrum S1H 0.58 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.68 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.95 1
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.47 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Magnetospirillum magneticum AMB-1 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase 0.63 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.56 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.67 AZOBR_RS03545 isopropylmalate isomerase 0.89 2
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.59 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.97 11
Rhodopseudomonas palustris CGA009 0.55 TX73_001175 3-isopropylmalate dehydrogenase 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit
Enterobacter sp. TBS_079 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.60 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.98 1
Escherichia coli Nissle 1917 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.61 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Escherichia coli ECRC99 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECOR38 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.61 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia fergusonii Becca 0.54 EFB2_03972 3-isopropylmalate dehydrogenase 0.61 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECRC98 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC101 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC101 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC102 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC62 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase 0.61 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli BL21 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.61 ECD_00074 3-isopropylmalate dehydratase large subunit 0.78 12
Escherichia coli ECOR27 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.61 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli BW25113 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.61 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.99 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.61 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Bosea sp. OAE506 0.54 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.65 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.97 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.60 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Rahnella sp. WP5 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.99 1
Shewanella sp. ANA-3 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.98 3
Shewanella oneidensis MR-1 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.99 3
Klebsiella michiganensis M5al 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.95 4
Shewanella amazonensis SB2B 0.53 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Serratia liquefaciens MT49 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.81 1
Shewanella loihica PV-4 0.52 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Dickeya dianthicola ME23 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.98 1
Caulobacter crescentus NA1000 0.52 CCNA_00193 3-isopropylmalate dehydrogenase 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 1.00 1
Caulobacter crescentus NA1000 Δfur 0.52 CCNA_00193 3-isopropylmalate dehydrogenase 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Dickeya dianthicola 67-19 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.89 4
Dickeya dadantii 3937 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.62 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.97 1
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12600 3-isopropylmalate dehydrogenase 0.59 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Pectobacterium carotovorum WPP14 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.62 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.98 4
Alteromonas macleodii MIT1002 0.52 MIT1002_00948 3-isopropylmalate dehydrogenase 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.99 1
Pantoea sp. MT58 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.98 2
Erwinia tracheiphila SCR3 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.57 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.97 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.52 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Lysobacter sp. OAE881 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.47 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.95 40
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.52 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.96 2
Rhodanobacter denitrificans MT42 0.46 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.48 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.47 19
Echinicola vietnamensis KMM 6221, DSM 17526 0.46 Echvi_2062 3-isopropylmalate dehydrogenase 0.50 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS09995 3-isopropylmalate dehydrogenase 0.48 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.99 11
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.54 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Parabacteroides merdae CL09T00C40 0.43 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.51 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.98 1
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.98 1
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.98 1
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.51 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.96 1
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.51 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.93 1
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.51 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.94 1
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04600 3-isopropylmalate dehydrogenase 0.50 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.99 1
Methanococcus maripaludis JJ 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase 0.24 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit
Methanococcus maripaludis S2 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase 0.24 MMP_RS05930 3-isopropylmalate dehydratase large subunit
Mycobacterium tuberculosis H37Rv 0.28 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) 0.57 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Bifidobacterium breve UCC2003 0.27 BBR_RS12870 3-isopropylmalate dehydrogenase 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.94 1

Not shown: 2 genomes with orthologs for PS417_18585 only; 0 genomes with orthologs for PS417_18600 only