Conservation of cofitness between CSW01_06875 and CSW01_14085 in Vibrio cholerae E7946 ATCC 55056

110 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 1.0 CSW01_14085 transcriptional regulator 0.65 4
Shewanella amazonensis SB2B 0.76 Sama_1826 ExsB protein (RefSeq) 0.70 Sama_2410 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2503 exsB exsB protein (NCBI ptt file) 0.69 SO3401 conserved hypothetical protein TIGR01033 (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.72 Shew_2062 exsB protein (RefSeq) 0.73 Shew_3408 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.72 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) 0.70 Shewana3_1155 hypothetical protein (RefSeq) low > 73
Pseudomonas orientalis W4I3 0.72 QF045_RS25625 7-cyano-7-deazaguanine synthase QueC 0.25 QF045_RS24625 YebC/PmpR family DNA-binding transcriptional regulator low > 93
Pantoea sp. MT58 0.72 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.33 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator low > 76
Escherichia fergusonii Becca 0.71 EFB2_03613 7-cyano-7-deazaguanine synthase 0.39 EFB2_01929 putative transcriptional regulatory protein YeeN low > 86
Escherichia coli ECOR27 0.71 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.39 NOLOHH_16120 ycdB putative transcriptional regulatory protein YcdB — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.39 ECOLIN_RS11460 YebC/PmpR family DNA-binding transcriptional regulator — —
Escherichia coli ECOR38 0.71 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.39 HEPCGN_03510 ycdB putative transcriptional regulatory protein YcdB low > 88
Escherichia coli ECRC62 0.71 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.39 BNILDI_14915 ycdB putative transcriptional regulatory protein YcdB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.39 OHPLBJKB_01725 putative transcriptional regulatory protein YeeN low > 74
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase 0.31 Pf6N2E2_5534 FIG000859: hypothetical protein YebC low > 103
Escherichia coli BW25113 0.71 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.39 b1983 yeeN hypothetical protein (NCBI) low > 76
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase 0.31 Pf1N1B4_640 FIG000859: hypothetical protein YebC — —
Escherichia coli BL21 0.70 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.39 ECD_01895 UPF0082 family protein — —
Escherichia coli ECRC102 0.70 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.39 NIAGMN_22680 ycdB putative transcriptional regulatory protein YcdB — —
Escherichia coli ECRC101 0.70 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.39 MCAODC_20215 ycdB putative transcriptional regulatory protein YcdB low > 87
Escherichia coli ECRC98 0.70 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.39 JDDGAC_29305 ycdB putative transcriptional regulatory protein YcdB low > 87
Escherichia coli ECRC100 0.70 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.39 OKFHMN_25175 ycdB putative transcriptional regulatory protein YcdB low > 79
Escherichia coli ECRC99 0.70 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.39 KEDOAH_02935 ycdB putative transcriptional regulatory protein YcdB — —
Klebsiella michiganensis M5al 0.70 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.33 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator — —
Rahnella sp. WP5 0.70 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC 0.32 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator low > 89
Serratia liquefaciens MT49 0.70 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.32 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_22170 7-cyano-7-deazaguanine synthase 0.30 AO353_03595 hypothetical protein low > 101
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF4360 Queuosine Biosynthesis QueC ATPase 0.38 GFF969 FIG007491: hypothetical protein YeeN low > 78
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC 0.33 PagCFBP13505_RS02315 YebC/PmpR family DNA-binding transcriptional regulator low > 74
Enterobacter sp. TBS_079 0.69 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.32 MPMX20_02769 putative transcriptional regulatory protein YebC low > 85
Pseudomonas lactucae CFBP13502 0.69 GEMAOFIL_04820 7-cyano-7-deazaguanine synthase 0.29 GEMAOFIL_04644 Transcriptional regulatory protein PmpR low > 96
Klebsiella pneumoniae MKP103 0.69 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC 0.33 KDGMDA_25425 putative transcriptional regulatory protein KPK_1906 low > 95
Enterobacter asburiae PDN3 0.69 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.33 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family low > 76
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_16475 queC 7-cyano-7-deazaguanine synthase QueC 0.31 IJEDHG_22125 tACO1 YebC/PmpR family DNA-binding transcriptional regulator — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.33 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator low > 75
Erwinia tracheiphila SCR3 0.69 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC 0.31 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator low > 73
Erwinia amylovora T8 0.68 OLJFJH_17935 7-cyano-7-deazaguanine synthase QueC 0.30 OLJFJH_12845 YebC/PmpR family DNA-binding transcriptional regulator low > 58
Dickeya dadantii 3937 0.68 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.32 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator low > 74
Dickeya dianthicola 67-19 0.67 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.31 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC 0.31 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator low > 75
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC 0.30 HMPREF1181_RS16620 YebC/PmpR family DNA-binding transcriptional regulator low > 56
Phocaeicola vulgatus CL09T03C04 0.54 HMPREF1058_RS15270 7-cyano-7-deazaguanine synthase QueC 0.31 HMPREF1058_RS03510 YebC/PmpR family DNA-binding transcriptional regulator low > 67
Phocaeicola dorei CL03T12C01 0.54 ABI39_RS11300 7-cyano-7-deazaguanine synthase QueC 0.31 ABI39_RS17640 YebC/PmpR family DNA-binding transcriptional regulator low > 72
Bacteroides thetaiotaomicron VPI-5482 0.53 BT1566 putative aluminum resistance protein (NCBI ptt file) 0.31 BT0627 conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.53 BACOVA_04309 protein ExsB 0.32 BACOVA_02249 DNA-binding regulatory protein, YebC/PmpR family low > 96
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC 0.28 HMPREF1078_RS09835 YebC/PmpR family DNA-binding transcriptional regulator low > 61
Variovorax sp. SCN45 0.45 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) 0.29 GFF303 Probable transcriptional regulatory protein YebC low > 127
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS01500 7-cyano-7-deazaguanine synthase 0.33 BPHYT_RS06410 transcriptional regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_02232 preQ(0) biosynthesis protein QueC 0.33 H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family — —
Paraburkholderia graminis OAS925 0.44 ABIE53_000396 7-cyano-7-deazaguanine synthase 0.34 ABIE53_001546 YebC/PmpR family DNA-binding regulatory protein low > 113
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS20880 7-cyano-7-deazaguanine synthase 0.33 HSERO_RS17750 transcriptional regulator — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC 0.32 QEN71_RS24395 YebC/PmpR family DNA-binding transcriptional regulator 0.72 1
Xanthobacter sp. DMC5 0.43 GFF3831 7-cyano-7-deazaguanine synthase 0.27 GFF83 putative transcriptional regulatory protein — —
Rhodopseudomonas palustris CGA009 0.42 TX73_014550 7-cyano-7-deazaguanine synthase QueC 0.29 TX73_005640 YebC/PmpR family DNA-binding transcriptional regulator 0.30 64
Desulfovibrio vulgaris Hildenborough JW710 0.42 DVU2659 exsB protein (TIGR) 0.27 DVU2259 conserved hypothetical protein TIGR01033 (TIGR) 0.28 46
Bosea sp. OAE506 0.41 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC 0.28 ABIE41_RS09460 YebC/PmpR family DNA-binding transcriptional regulator low > 77
Castellaniella sp019104865 MT123 0.41 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC 0.28 ABCV34_RS02555 YebC/PmpR family DNA-binding transcriptional regulator low > 48
Methylophilus sp. DMC18 0.41 GFF1367 7-cyano-7-deazaguanine synthase 0.33 GFF2324 Transcriptional regulatory protein PmpR low > 43
Acidovorax sp. GW101-3H11 0.41 Ac3H11_4838 Queuosine Biosynthesis QueC ATPase 0.29 Ac3H11_2422 FIG000859: hypothetical protein — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_1125 exsB protein (RefSeq) 0.26 DvMF_3201 hypothetical protein (RefSeq) low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC 0.25 A4249_RS15840 YebC/PmpR family DNA-binding transcriptional regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1402 Queuosine Biosynthesis QueC ATPase 0.27 GFF4523 FIG000859: hypothetical protein YebC low > 90
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_03262 queuosine biosynthesis protein QueC 0.24 CCNA_03352 YebC/PmpR transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.40 CCNA_03262 queuosine biosynthesis protein QueC 0.24 CCNA_03352 YebC/PmpR transcriptional regulator low > 66
Pseudomonas sp. S08-1 0.30 OH686_19180 queuosine biosynthesis protein QueC 0.27 OH686_19120 Probable transcriptional regulatory protein YebC low > 80
Pseudomonas stutzeri RCH2 0.30 Psest_1506 queuosine biosynthesis protein QueC 0.28 Psest_1494 DNA-binding regulatory protein, YebC/PmpR family — —
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_18070 7-cyano-7-deazaguanine synthase 0.31 AO356_18010 hypothetical protein low > 104
Pseudomonas segetis P6 0.29 ACVTMO_RS08405 queC 7-cyano-7-deazaguanine synthase QueC 0.27 ACVTMO_RS08345 YebC/PmpR family DNA-binding transcriptional regulator low > 75
Pseudomonas aeruginosa MRSN321 0.29 DY961_RS07550 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC 0.28 DY961_RS07610 YebC/PmpR family DNA-binding transcriptional regulator low > 100
Pseudomonas aeruginosa PUPa3 0.29 DQ20_RS45240 queC;go_process=queuosine 7-cyano-7-deazaguanine synthase QueC 0.28 DQ20_RS45180 YebC/PmpR family DNA-binding transcriptional regulator — —
Pseudomonas sp. RS175 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase 0.31 PFR28_03415 Transcriptional regulatory protein PmpR low > 88
Pseudomonas aeruginosa PA14 0.29 IKLFDK_04420 7-cyano-7-deazaguanine synthase QueC 0.28 IKLFDK_04360 YebC/PmpR family DNA-binding transcriptional regulator low > 98
Alteromonas macleodii MIT1002 0.29 MIT1002_01263 7-cyano-7-deazaguanine synthase 0.74 MIT1002_00845 putative transcriptional regulatory protein YeeN low > 70
Acinetobacter baumannii LAC-4 0.29 RR41_RS04750 7-cyano-7-deazaguanine synthase QueC 0.28 RR41_RS11700 YebC/PmpR family DNA-binding transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.32 Psyr_1407 Protein of unknown function DUF28 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1419 preQ(0) biosynthesis protein QueC 0.32 Psyr_1407 Protein of unknown function DUF28 low > 86
Pseudomonas sp. SVBP6 0.28 COO64_RS20145 queC 7-cyano-7-deazaguanine synthase QueC 0.30 COO64_RS20085 YebC/PmpR family DNA-binding transcriptional regulator low > 93
Lysobacter sp. OAE881 0.28 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC 0.32 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator low > 62
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase 0.32 PfGW456L13_1850 FIG000859: hypothetical protein YebC low > 87
Pseudomonas putida KT2440 0.28 PP_1226 pre-queuosine 0 synthase 0.27 PP_1214 putative transcriptional regulatory protein low > 96
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_1146 preQ(0) biosynthesis protein QueC 0.67 B158DRAFT_0606 Uncharacterized conserved protein low > 40
Pseudomonas sp. DMC3 0.28 GFF5175 7-cyano-7-deazaguanine synthase 0.32 GFF5187 Transcriptional regulatory protein PmpR low > 89
Pseudomonas sp. BP01 0.28 JOY50_RS01770 queC 7-cyano-7-deazaguanine synthase QueC 0.28 JOY50_RS01830 YebC/PmpR family DNA-binding transcriptional regulator low > 84
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase 0.29 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC low > 74
Pseudomonas simiae WCS417 0.28 PS417_22400 7-cyano-7-deazaguanine synthase 0.30 PS417_22460 hypothetical protein — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC 0.32 RALBFv3_RS03540 YebC/PmpR family DNA-binding transcriptional regulator — —
Ralstonia solanacearum UW163 0.28 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC 0.32 UW163_RS10130 YebC/PmpR family DNA-binding transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.30 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator low > 109
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC 0.25 ABZR86_RS10850 YebC/PmpR family DNA-binding transcriptional regulator — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.30 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator low > 109
Acinetobacter radioresistens SK82 0.27 MPMX26_02175 7-cyano-7-deazaguanine synthase 0.28 MPMX26_01851 putative transcriptional regulatory protein YebC low > 36
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC 0.33 ABZR87_RS15405 YebC/PmpR family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.27 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC 0.32 RPSI07_RS13685 YebC/PmpR family DNA-binding transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.27 RS_RS03715 7-cyano-7-deazaguanine synthase 0.32 RS_RS10990 YebC/PmpR family DNA-binding transcriptional regulator low > 80
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS15445 7-cyano-7-deazaguanine synthase 0.33 RR42_RS04735 hypothetical protein low > 128
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC 0.26 LRK54_RS04920 YebC/PmpR family DNA-binding transcriptional regulator low > 59
Rhodanobacter denitrificans MT42 0.26 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC 0.26 LRK55_RS04700 YebC/PmpR family DNA-binding transcriptional regulator low > 63
Azospirillum sp. SherDot2 0.26 MPMX19_00425 7-cyano-7-deazaguanine synthase 0.24 MPMX19_00695 putative transcriptional regulatory protein low > 112
Magnetospirillum magneticum AMB-1 0.26 AMB_RS20345 7-cyano-7-deazaguanine synthase 0.22 AMB_RS16265 YebC/PmpR family DNA-binding transcriptional regulator — —
Rhodanobacter sp000427505 FW510-R12 0.26 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC 0.25 LRK53_RS05110 YebC/PmpR family DNA-binding transcriptional regulator low > 59
Rhodospirillum rubrum S1H 0.26 Rru_A1957 ExsB (NCBI) 0.25 Rru_A1086 hypothetical protein (RefSeq) low > 58
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC 0.26 OKGIIK_01830 tACO1 YebC/PmpR family DNA-binding transcriptional regulator low > 53
Dechlorosoma suillum PS 0.26 Dsui_0549 queuosine biosynthesis protein QueC 0.32 Dsui_0489 DNA-binding regulatory protein, YebC/PmpR family low > 51
Marinobacter adhaerens HP15 0.25 HP15_3814 ExsB protein 0.67 HP15_899 protein YeeN low > 73
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_3209 queuosine biosynthesis protein QueC 0.29 Ga0059261_0824 DNA-binding regulatory protein, YebC/PmpR family — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS04150 7-cyano-7-deazaguanine synthase 0.25 AZOBR_RS09035 transcriptional regulator low > 97
Synechocystis sp000284455 PCC 6803 0.24 SGL_RS16620 7-cyano-7-deazaguanine synthase QueC 0.23 SGL_RS12485 YebC/PmpR family DNA-binding transcriptional regulator low > 52
Sphingobium sp. HT1-2 0.23 GFF3749 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) 0.28 GFF491 Probable transcriptional regulatory protein YebC — —
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_1333 ExsB 0.24 Synpcc7942_1017 hypothetical protein low > 38
Agrobacterium fabrum C58 0.18 Atu3346 succinoglycan biosynthesis regulator 0.30 Atu3727 hypothetical protein low > 89
Phaeobacter inhibens DSM 17395 0.17 PGA1_c05600 queuosine biosynthesis protein QueC 0.29 PGA1_c21770 DNA-binding regulatory protein, YebC/PmpR family — —
Sinorhizobium meliloti 1021 0.17 SM_b20940 hypothetical protein 0.30 SMc03969 hypothetical protein low > 103

Not shown: 2 genomes with orthologs for CSW01_06875 only; 11 genomes with orthologs for CSW01_14085 only