Conservation of cofitness between CSW01_02080 and CSW01_05630 in Vibrio cholerae E7946 ATCC 55056

121 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02080 UvrABC system protein A 1.0 CSW01_05630 replication-associated recombination protein A 0.59 1
Klebsiella pneumoniae MRSN742743 0.83 GJGHJB_04694 uvrA excinuclease ABC subunit UvrA 0.73 GJGHJB_03321 rarA replication-associated recombination protein RarA low > 83
Klebsiella pneumoniae MKP103 0.83 KDGMDA_10400 excinuclease ABC subunit UvrA 0.73 KDGMDA_17905 replication-associated recombination protein RarA low > 94
Enterobacter asburiae PDN3 0.82 EX28DRAFT_4246 excinuclease ABC, A subunit 0.72 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase low > 76
Klebsiella michiganensis M5al 0.82 BWI76_RS01950 excinuclease ABC subunit A 0.73 BWI76_RS09670 recombination factor protein RarA low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF1429 Excinuclease ABC subunit A 0.73 GFF4896 FIG065221: Holliday junction DNA helicase low > 78
Serratia liquefaciens MT49 0.82 IAI46_22905 excinuclease ABC subunit UvrA 0.70 IAI46_08570 replication-associated recombination protein A low > 87
Rahnella sp. WP5 0.82 EX31_RS11990 excinuclease ABC subunit UvrA 0.71 EX31_RS18515 replication-associated recombination protein A low > 89
Enterobacter sp. TBS_079 0.82 MPMX20_00276 UvrABC system protein A 0.72 MPMX20_01554 Replication-associated recombination protein A low > 85
Escherichia coli ECRC102 0.82 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.73 NIAGMN_03280 rarA replication-associated recombination protein RarA low > 80
Escherichia coli ECRC99 0.82 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.73 KEDOAH_22175 rarA replication-associated recombination protein RarA
Escherichia coli ECRC101 0.82 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.73 MCAODC_24950 rarA replication-associated recombination protein RarA low > 87
Escherichia fergusonii Becca 0.82 EFB2_04533 UvrABC system protein A 0.73 EFB2_03169 Replication-associated recombination protein A low > 86
Escherichia coli ECRC98 0.82 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.73 JDDGAC_09370 rarA replication-associated recombination protein RarA low > 87
Escherichia coli Nissle 1917 0.82 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.73 ECOLIN_RS04745 replication-associated recombination protein RarA low > 55
Escherichia coli BW25113 0.82 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.73 b0892 ycaJ recombination protein (NCBI) low > 76
Escherichia coli ECOR27 0.82 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.72 NOLOHH_22130 rarA replication-associated recombination protein RarA low > 75
Escherichia coli ECRC62 0.82 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.72 BNILDI_20385 rarA replication-associated recombination protein RarA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03983 UvrABC system protein A 0.73 OHPLBJKB_02776 Replication-associated recombination protein A low > 74
Escherichia coli ECRC100 0.82 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.73 OKFHMN_05560 rarA replication-associated recombination protein RarA low > 79
Escherichia coli ECOR38 0.82 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.73 HEPCGN_22950 rarA replication-associated recombination protein RarA low > 88
Escherichia coli BL21 0.82 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.73 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.63 23
Pectobacterium carotovorum WPP14 0.82 HER17_RS03550 excinuclease ABC subunit UvrA 0.72 HER17_RS12345 replication-associated recombination protein A low > 75
Shewanella amazonensis SB2B 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.61 Sama_1774 recombination factor protein RarA (RefSeq) low > 62
Shewanella sp. ANA-3 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.63 Shewana3_2052 recombination factor protein RarA (RefSeq) low > 73
Shewanella loihica PV-4 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.64 Shew_2022 recombination factor protein RarA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.63 SO2308 ATPase, AAA family (NCBI ptt file) 0.32 37
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.71 IJEDHG_20230 Replication-associated recombination protein A low > 61
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13516_RS18050 uvrA excinuclease ABC subunit UvrA 0.73 PagCFBP13516_RS12985 replication-associated recombination protein A low > 80
Erwinia tracheiphila SCR3 0.81 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.69 LU632_RS09755 replication-associated recombination protein A low > 73
Erwinia amylovora T8 0.81 OLJFJH_03425 excinuclease ABC subunit UvrA 0.71 OLJFJH_16170 recombination factor protein RarA low > 58
Dickeya dadantii 3937 0.81 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.73 DDA3937_RS09605 replication-associated recombination protein A low > 74
Dickeya dianthicola 67-19 0.81 HGI48_RS17610 excinuclease ABC subunit UvrA 0.73 HGI48_RS09620 replication-associated recombination protein A low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS18735 excinuclease ABC subunit UvrA 0.73 DZA65_RS09930 replication-associated recombination protein A low > 75
Pantoea sp. MT58 0.81 IAI47_17815 excinuclease ABC subunit UvrA 0.73 IAI47_12900 replication-associated recombination protein A low > 76
Alteromonas macleodii MIT1002 0.81 MIT1002_00179 Excinuclease ABC subunit A 0.59 MIT1002_02178 Replication-associated recombination protein A low > 70
Pseudomonas protegens RBAN4 0.77 FABNJH_27955 uvrA excinuclease ABC subunit UvrA 0.55 FABNJH_20050 Replication-associated recombination protein A
Pseudomonas aeruginosa MRSN321 0.77 PFGADD_00720 uvrA excinuclease ABC subunit UvrA 0.55 PFGADD_02407 Replication-associated recombination protein A low > 99
Pseudomonas aeruginosa PA14 0.77 IKLFDK_21795 excinuclease ABC subunit UvrA 0.55 IKLFDK_13115 recombination factor protein RarA low > 98
Pseudomonas aeruginosa PUPa3 0.77 NPBIFN_00723 uvrA excinuclease ABC subunit UvrA 0.55 NPBIFN_02446 Replication-associated recombination protein A low > 101
Pseudomonas sp. S08-1 0.77 OH686_15495 excinuclease ABC subunit A 0.56 OH686_00270 Replication-associated recombination protein RarA low > 80
Pseudomonas sp. RS175 0.77 PFR28_03974 UvrABC system protein A 0.56 PFR28_02606 Replication-associated recombination protein A low > 88
Pseudomonas sp. DMC3 0.77 GFF3792 UvrABC system protein A 0.56 GFF1532 Replication-associated recombination protein A low > 89
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.55 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase low > 40
Pseudomonas sp. BP01 0.77 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.57 JOY50_RS06525 replication-associated recombination protein A low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_4520 Excinuclease ABC subunit A 0.57 Psyr_3177 Recombination protein MgsA low > 86
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_2611 Excinuclease ABC subunit A 0.56 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase low > 87
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_4520 Excinuclease ABC subunit A 0.57 Psyr_3177 Recombination protein MgsA 0.31 18
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27025 excinuclease ABC subunit UvrA 0.55 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14785 ABC-ATPase UvrA 0.57 AO356_22185 recombination factor protein RarA 0.55 14
Pseudomonas sp. FW215-L2 0.77 GFF1807 UvrABC system protein A 0.55 GFF2717 Replication-associated recombination protein A low > 111
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_05194 UvrABC system protein A 0.55 GEMAOFIL_03623 Replication-associated recombination protein A low > 96
Pseudomonas putida KT2440 0.77 PP_0483 excinuclease (uvrABC system protein A) 0.57 PP_4002 DNA-dependent ATPase required for recombination
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4888 Excinuclease ABC subunit A 0.56 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.34 32
Pseudomonas sp. SVBP6 0.77 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.57 COO64_RS24170 replication-associated recombination protein A low > 91
Pseudomonas simiae WCS417 0.77 PS417_25395 excinuclease ABC subunit A 0.55 PS417_16480 recombination factor protein RarA 0.21 72
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_1283 Excinuclease ABC subunit A 0.55 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase low > 87
Pseudomonas orientalis W4I3 0.77 QF045_RS27415 excinuclease ABC subunit UvrA 0.55 QF045_RS18235 replication-associated recombination protein A 0.54 7
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_06855 ABC-ATPase UvrA 0.55 AO353_27640 recombination factor protein RarA low > 101
Pseudomonas stutzeri RCH2 0.76 Psest_3576 excinuclease ABC, A subunit 0.55 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.23 40
Pseudomonas segetis P6 0.76 ACVTMO_RS04790 uvrA excinuclease ABC subunit UvrA 0.55 ACVTMO_RS12580 replication-associated recombination protein A low > 75
Marinobacter adhaerens HP15 0.74 HP15_406 excinuclease ABC, ATPase subunit (A) 0.57 HP15_1817 recombination factor protein RarA low > 73
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.49 LRK53_RS11700 replication-associated recombination protein A low > 59
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.48 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase low > 74
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.49 OKGIIK_07580 rarA recombination factor protein RarA low > 53
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.49 LRK54_RS17320 replication-associated recombination protein A 0.42 18
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.48 LRK55_RS17545 replication-associated recombination protein A 0.90 38
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.48 ABZR86_RS01825 replication-associated recombination protein A 0.83 8
Dechlorosoma suillum PS 0.71 Dsui_1622 excinuclease ABC, A subunit 0.48 Dsui_1694 AAA ATPase low > 51
Acinetobacter baumannii LAC-4 0.70 RR41_RS01040 excinuclease ABC subunit UvrA 0.36 RR41_RS00275 replication-associated recombination protein A low > 55
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.36 MPMX26_02987 Replication-associated recombination protein A low > 36
Methylophilus sp. DMC18 0.69 GFF2008 UvrABC system protein A 0.49 GFF351 Replication-associated recombination protein A low > 43
Collimonas humicola GW821-FHT01A05 0.68 MPMX01_00559 UvrABC system protein A 0.48 MPMX01_01746 Replication-associated recombination protein A low > 87
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS19810 excinuclease ABC subunit A 0.47 HSERO_RS09515 ATPase AAA low > 78
Paraburkholderia graminis OAS925 0.68 ABIE53_000732 excinuclease ABC subunit A 0.49 ABIE53_001292 putative ATPase 0.55 2
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS02970 excinuclease ABC subunit A 0.49 BPHYT_RS05100 ATPase AAA low > 109
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_01913 Excinuclease ABC subunit A 0.48 H281DRAFT_00180 Recombination protein MgsA low > 103
Ralstonia solanacearum GMI1000 0.68 RS_RS02080 excinuclease ABC subunit UvrA 0.48 RS_RS11735 replication-associated recombination protein A low > 80
Ralstonia solanacearum PSI07 0.68 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.49 RPSI07_RS13205 replication-associated recombination protein A low > 81
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.50 ABZR87_RS16030 replication-associated recombination protein A low > 80
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.49 RALBFv3_RS04145 replication-associated recombination protein A 0.58 26
Ralstonia solanacearum UW163 0.68 UW163_RS02345 excinuclease ABC subunit UvrA 0.49 UW163_RS09525 replication-associated recombination protein A
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS01825 excinuclease ABC subunit UvrA 0.50 QEN71_RS03415 replication-associated recombination protein A low > 153
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS02145 excinuclease ABC subunit A 0.49 RR42_RS04355 recombination factor protein RarA low > 128
Variovorax sp. SCN45 0.65 GFF4944 Excinuclease ABC subunit A 0.47 GFF6034 Replication-associated recombination protein RarA low > 127
Variovorax sp. OAS795 0.65 ABID97_RS04340 excinuclease ABC subunit UvrA 0.48 ABID97_RS07835 replication-associated recombination protein A low > 91
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.47 Ac3H11_1696 FIG065221: Holliday junction DNA helicase low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF2755 Excinuclease ABC subunit A 0.38 GFF777 FIG065221: Holliday junction DNA helicase low > 92
Castellaniella sp019104865 MT123 0.61 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.47 ABCV34_RS07220 replication-associated recombination protein A low > 48
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.40 TX73_016655 replication-associated recombination protein A low > 86
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.40 Dshi_0313 AAA ATPase central domain protein (RefSeq) low > 64
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.39 CCNA_01342 ATPase, AAA family low > 66
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.39 CCNA_01342 ATPase, AAA family low > 67
Xanthobacter sp. DMC5 0.60 GFF749 UvrABC system protein A 0.41 GFF1351 Replication-associated recombination protein A
Rhodospirillum rubrum S1H 0.60 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.39 Rru_A2660 AAA ATPase, central region (NCBI) low > 58
Azospirillum sp. SherDot2 0.60 MPMX19_01152 UvrABC system protein A 0.41 MPMX19_01528 Replication-associated recombination protein A low > 112
Sphingobium sp. HT1-2 0.59 GFF1696 Excinuclease ABC subunit A 0.39 GFF39 Replication-associated recombination protein RarA low > 95
Phaeobacter inhibens DSM 17395 0.59 PGA1_c17370 uvrABC system protein A 0.39 PGA1_c01930 replication-associated recombination protein A 0.39 18
Azospirillum brasilense Sp245 0.59 AZOBR_RS15370 excinuclease ABC subunit A 0.40 AZOBR_RS06885 ATPase AAA low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.58 A4249_RS08575 excinuclease ABC subunit UvrA 0.41 A4249_RS07890 replication-associated recombination protein A low > 48
Magnetospirillum magneticum AMB-1 0.58 AMB_RS12410 excinuclease ABC subunit UvrA 0.39 AMB_RS17620 replication-associated recombination protein A low > 64
Bosea sp. OAE506 0.58 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.38 ABIE41_RS14690 replication-associated recombination protein A low > 77
Rhizobium sp. OAE497 0.58 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.41 ABIE40_RS08045 replication-associated recombination protein A low > 107
Agrobacterium fabrum C58 0.57 Atu1513 ABC excinuclease subunit A 0.41 Atu1914 ATPase, AAA family protein low > 89
Sinorhizobium meliloti 1021 0.57 SMc01235 excinuclease ABC subunit A 0.41 SMc01279 recombination factor protein RarA low > 103
Mycobacterium tuberculosis H37Rv 0.56 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.34 Rv2559c Conserved hypothetical alanine leucine valine rich protein low > 58
Bifidobacterium breve UCC2003 0.54 BBR_RS15510 excinuclease ABC subunit UvrA 0.36 BBR_RS17330 replication-associated recombination protein A low > 34
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.30 HUW76_02735 replication-associated recombination protein A low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_1138 excinuclease ABC, A subunit 0.37 Echvi_4603 ATPase related to the helicase subunit of the Holliday junction resolvase low > 79
Cellulophaga baltica 18 0.50 M666_RS15455 excinuclease ABC subunit UvrA 0.36 M666_RS01075 replication-associated recombination protein A 0.64 57
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.30 DVU1686 ATPase, AAA family (TIGR) low > 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.49 CA264_18100 ABC-ATPase UvrA 0.39 CA264_02215 AAA family ATPase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.38 ABZR88_RS20285 replication-associated recombination protein A low > 71
Bacteroides thetaiotaomicron VPI-5482 0.48 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS25080 excinuclease ABC subunit A 0.38 CA265_RS22400 AAA family ATPase low > 88
Bacteroides ovatus ATCC 8483 0.48 BACOVA_03703 excinuclease ABC, A subunit 0.39 BACOVA_03971 ATPase, AAA family low > 96
Phocaeicola dorei CL03T12C01 0.48 ABI39_RS15330 excinuclease ABC subunit UvrA 0.39 ABI39_RS20200 replication-associated recombination protein A low > 72
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.39 HMPREF1058_RS06440 replication-associated recombination protein A low > 67
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.39 HMPREF1078_RS15395 replication-associated recombination protein A low > 61
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.30 DvMF_0339 recombination factor protein RarA (RefSeq) low > 51
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.38 HMPREF1181_RS16975 replication-associated recombination protein A low > 56

Not shown: 5 genomes with orthologs for CSW01_02080 only; 1 genomes with orthologs for CSW01_05630 only