Conservation of cofitness between CSW01_10875 and CSW01_00560 in Vibrio cholerae E7946 ATCC 55056

114 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10875 redox-regulated ATPase YchF 1.0 CSW01_00560 DNA polymerase I 0.73 19
Shewanella amazonensis SB2B 0.85 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.63 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Shewanella sp. ANA-3 0.84 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.62 Shewana3_4109 DNA polymerase I (RefSeq) — —
Alteromonas macleodii MIT1002 0.84 MIT1002_01504 Ribosome-binding ATPase YchF 0.62 MIT1002_00014 DNA polymerase I low > 70
Shewanella oneidensis MR-1 0.83 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.62 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella loihica PV-4 0.83 Shew_2919 translation-associated GTPase (RefSeq) 0.63 Shew_3714 DNA polymerase I (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.63 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Klebsiella pneumoniae MKP103 0.80 KDGMDA_24705 redox-regulated ATPase YchF 0.63 KDGMDA_08970 DNA polymerase I — —
Escherichia fergusonii Becca 0.80 EFB2_02724 Ribosome-binding ATPase YchF 0.64 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC62 0.80 BNILDI_18805 ychF redox-regulated ATPase YchF 0.64 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.80 ECOLIN_RS07280 redox-regulated ATPase YchF 0.64 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC102 0.80 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.64 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC100 0.80 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.64 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECOR27 0.80 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.64 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC101 0.80 MCAODC_21850 ychF redox-regulated ATPase YchF 0.64 MCAODC_04650 polA DNA polymerase I low > 88
Escherichia coli BW25113 0.80 b1203 ychF translation-associated GTPase (NCBI) 0.64 b3863 polA DNA polymerase I (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.64 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC98 0.80 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.64 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC99 0.80 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.64 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECOR38 0.80 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.64 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli BL21 0.80 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.64 ECD_03749 5 — —
Pectobacterium carotovorum WPP14 0.80 HER17_RS10445 redox-regulated ATPase YchF 0.65 HER17_RS21470 DNA polymerase I — —
Pantoea agglomerans CFBP13505 P0401 0.79 PagCFBP13505_RS17295 redox-regulated ATPase YchF 0.64 PagCFBP13505_RS18920 DNA polymerase I low > 74
Dickeya dadantii 3937 0.79 DDA3937_RS11035 redox-regulated ATPase YchF 0.63 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola 67-19 0.79 HGI48_RS10975 redox-regulated ATPase YchF 0.63 HGI48_RS21260 DNA polymerase I — —
Pantoea sp. MT58 0.79 IAI47_11310 redox-regulated ATPase YchF 0.65 IAI47_00430 DNA polymerase I low > 76
Erwinia tracheiphila SCR3 0.79 LU632_RS13950 ychF redox-regulated ATPase YchF 0.64 LU632_RS23870 polA DNA polymerase I — —
Dickeya dianthicola ME23 0.79 DZA65_RS11435 redox-regulated ATPase YchF 0.62 DZA65_RS22235 DNA polymerase I — —
Erwinia tracheiphila HP pepo 2.2 0.78 IJEDHG_21765 ychF redox-regulated ATPase YchF 0.64 IJEDHG_10990 polA DNA polymerase I — —
Erwinia amylovora T8 0.78 OLJFJH_14950 redox-regulated ATPase YchF 0.64 OLJFJH_05470 DNA polymerase I low > 58
Klebsiella michiganensis M5al 0.77 BWI76_RS17485 GTP-binding protein YchF 0.63 BWI76_RS00355 DNA polymerase I — —
Serratia liquefaciens MT49 0.77 IAI46_10240 redox-regulated ATPase YchF 0.66 IAI46_24985 DNA polymerase I — —
Enterobacter sp. TBS_079 0.77 MPMX20_02645 Ribosome-binding ATPase YchF 0.64 MPMX20_04601 DNA polymerase I low > 85
Acinetobacter radioresistens SK82 0.77 MPMX26_01861 Ribosome-binding ATPase YchF 0.46 MPMX26_00574 DNA polymerase I 0.67 32
Marinobacter adhaerens HP15 0.77 HP15_704 translation-associated GTPase 0.52 HP15_293 DNA polymerase I low > 73
Rahnella sp. WP5 0.77 EX31_RS07380 redox-regulated ATPase YchF 0.65 EX31_RS15905 DNA polymerase I low > 89
Acinetobacter baumannii LAC-4 0.77 RR41_RS11610 redox-regulated ATPase YchF 0.46 RR41_RS15915 DNA polymerase I — —
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0821 GTP-binding protein YchF 0.64 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_2052 GTP-binding protein YchF 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Pseudomonas sp. S08-1 0.76 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.57 OH686_12215 DNA polymerase I low > 80
Pseudomonas stutzeri RCH2 0.75 Psest_1103 GTP-binding protein YchF 0.58 Psest_4219 DNA polymerase I low > 67
Pseudomonas aeruginosa PA14 0.75 IKLFDK_00125 Ribosome-binding ATPase YchF 0.58 IKLFDK_25945 DNA polymerase I low > 100
Pseudomonas lactucae CFBP13502 0.74 GEMAOFIL_00918 Ribosome-binding ATPase YchF 0.55 GEMAOFIL_00284 DNA polymerase I low > 93
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_16450 GTP-binding protein 0.55 AO356_11465 DNA polymerase I low > 104
Pseudomonas sp. SVBP6 0.74 COO64_RS03185 ychF redox-regulated ATPase YchF 0.57 COO64_RS02475 polA DNA polymerase I low > 93
Pseudomonas sp. RS175 0.74 PFR28_03664 Ribosome-binding ATPase YchF 0.54 PFR28_04624 DNA polymerase I low > 88
Pseudomonas sp. BP01 0.74 JOY50_RS24895 ychF redox-regulated ATPase YchF 0.58 JOY50_RS21110 polA DNA polymerase I low > 84
Pseudomonas sp. DMC3 0.74 GFF4499 Ribosome-binding ATPase YchF 0.55 GFF631 DNA polymerase I low > 89
Pseudomonas putida KT2440 0.74 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.58 PP_0123 DNA polymerase I, 5 low > 96
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.54 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas segetis P6 0.74 MPMX49_01326 Ribosome-binding ATPase YchF 0.57 MPMX49_00321 DNA polymerase I low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_0941 Conserved hypothetical protein 92 0.55 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_0941 Conserved hypothetical protein 92 0.55 Psyr_0270 DNA polymerase I low > 86
Pseudomonas simiae WCS417 0.73 PS417_03560 GTP-binding protein 0.56 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_14740 GTP-binding protein 0.56 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.55 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS02220 redox-regulated ATPase YchF 0.52 ABZR87_RS15680 DNA polymerase I 0.64 33
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS03610 redox-regulated ATPase YchF 0.55 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS03610 redox-regulated ATPase YchF 0.55 PFLU_RS00395 DNA polymerase I low > 109
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS18365 GTP-binding protein 0.51 RR42_RS15050 DNA polymerase I low > 128
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS22010 redox-regulated ATPase YchF 0.52 ABZR86_RS17015 DNA polymerase I low > 74
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS17445 GTP-binding protein YchF 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia graminis OAS925 0.72 ABIE53_003650 GTP-binding protein YchF 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Ralstonia solanacearum GMI1000 0.72 RS_RS14520 redox-regulated ATPase YchF 0.52 RS_RS11195 DNA polymerase I low > 80
Paraburkholderia bryophila 376MFSha3.1 0.72 H281DRAFT_05705 hypothetical protein 0.51 H281DRAFT_06022 DNA polymerase I low > 103
Ralstonia solanacearum PSI07 0.71 RPSI07_RS10660 redox-regulated ATPase YchF 0.52 RPSI07_RS13480 DNA polymerase I low > 81
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27600 redox-regulated ATPase YchF 0.52 QEN71_RS17885 DNA polymerase I — —
Lysobacter sp. OAE881 0.71 ABIE51_RS05745 redox-regulated ATPase YchF 0.49 ABIE51_RS02010 DNA polymerase I low > 62
Methylophilus sp. DMC18 0.71 GFF1904 Ribosome-binding ATPase YchF 0.52 GFF1658 DNA polymerase I low > 43
Rhodanobacter sp000427505 FW510-R12 0.70 LRK53_RS06260 redox-regulated ATPase YchF 0.52 LRK53_RS01570 DNA polymerase I — —
Ralstonia solanacearum UW163 0.70 UW163_RS07055 redox-regulated ATPase YchF 0.52 UW163_RS09920 DNA polymerase I — —
Rhodanobacter sp. FW510-T8 0.70 OKGIIK_10565 Ribosome-binding ATPase YchF 0.52 OKGIIK_16785 polA DNA polymerase I low > 53
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS06570 redox-regulated ATPase YchF 0.52 RALBFv3_RS03750 DNA polymerase I low > 76
Rhodanobacter denitrificans FW104-10B01 0.70 LRK54_RS03675 redox-regulated ATPase YchF 0.52 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.70 LRK55_RS03425 redox-regulated ATPase YchF 0.52 LRK55_RS06585 DNA polymerase I low > 63
Dechlorosoma suillum PS 0.69 Dsui_1039 GTP-binding protein YchF 0.52 Dsui_0459 DNA polymerase I — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS20405 GTP-binding protein YchF 0.53 HSERO_RS02260 DNA polymerase I 0.38 2
Castellaniella sp019104865 MT123 0.68 ABCV34_RS09215 redox-regulated ATPase YchF 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Variovorax sp. SCN45 0.68 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.81 91
Variovorax sp. OAS795 0.67 ABID97_RS24750 redox-regulated ATPase YchF 0.47 ABID97_RS09180 DNA polymerase I low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.63 CA264_07495 GTP-binding protein YchF 0.35 CA264_16535 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.61 Echvi_2525 GTP-binding protein YchF 0.36 Echvi_1032 DNA polymerase I low > 79
Magnetospirillum magneticum AMB-1 0.60 AMB_RS21985 redox-regulated ATPase YchF 0.39 AMB_RS21305 DNA polymerase I — —
Cellulophaga baltica 18 0.60 M666_RS17330 redox-regulated ATPase YchF 0.35 M666_RS07555 DNA polymerase I low > 67
Sinorhizobium meliloti 1021 0.60 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.29 SMc02850 DNA polymerase I low > 103
Bacteroides thetaiotaomicron VPI-5482 0.60 BT3116 GTP-binding protein (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.60 BACOVA_02821 GTP-binding protein YchF 0.36 BACOVA_01357 DNA-directed DNA polymerase 0.55 70
Rhizobium sp. OAE497 0.59 ABIE40_RS13100 redox-regulated ATPase YchF 0.38 ABIE40_RS00490 DNA polymerase I — —
Azospirillum brasilense Sp245 0.59 AZOBR_RS30645 GTP-binding protein YchF 0.38 AZOBR_RS30685 DNA polymerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.59 CA265_RS13275 redox-regulated ATPase YchF 0.34 CA265_RS19630 DNA polymerase I low > 88
Agrobacterium fabrum C58 0.59 Atu2233 GTP-binding protein 0.38 Atu0110 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.59 CCNA_00512 GTP-binding protein, probable translation factor 0.39 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.59 CCNA_00512 GTP-binding protein, probable translation factor 0.39 CCNA_03577 DNA polymerase I low > 66
Azospirillum sp. SherDot2 0.58 MPMX19_01641 Ribosome-binding ATPase YchF 0.39 MPMX19_04869 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.58 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.39 PGA1_c31780 DNA polymerase I low > 62
Parabacteroides merdae CL09T00C40 0.58 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.37 HMPREF1078_RS06335 DNA polymerase I low > 61
Dinoroseobacter shibae DFL-12 0.58 Dshi_0954 GTP-binding protein YchF (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS14155 redox-regulated ATPase YchF 0.34 ABZR88_RS20185 DNA polymerase I low > 71
Rhodospirillum rubrum S1H 0.58 Rru_A3748 hypothetical protein (NCBI) 0.34 Rru_A3514 DNA polymerase A (NCBI) — —
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_0554 ychF translation-associated GTPase 0.29 Synpcc7942_0194 polA DNA polymerase I — —
Phocaeicola dorei CL03T12C01 0.58 ABI39_RS05450 redox-regulated ATPase YchF 0.36 ABI39_RS05440 DNA polymerase I — —
Phocaeicola vulgatus CL09T03C04 0.57 HMPREF1058_RS11490 redox-regulated ATPase YchF 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Fusobacterium nucleatum SB010 0.57 HUW76_08540 redox-regulated ATPase YchF 0.26 HUW76_04385 DNA polymerase I low > 35
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_3227 GTP-binding protein YchF 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Sphingobium sp. HT1-2 0.57 GFF48 GTP-binding and nucleic acid-binding protein YchF 0.35 GFF3778 DNA polymerase I (EC 2.7.7.7) — —
Bosea sp. OAE506 0.57 ABIE41_RS11295 redox-regulated ATPase YchF 0.34 ABIE41_RS03570 DNA polymerase I — —
Synechocystis sp000284455 PCC 6803 0.56 SGL_RS08975 redox-regulated ATPase YchF 0.28 SGL_RS16290 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS09035 redox-regulated ATPase YchF 0.38 A4249_RS13840 DNA polymerase I — —
Xanthobacter sp. DMC5 0.55 GFF1678 Ribosome-binding ATPase YchF 0.37 GFF1973 DNA polymerase I — —
Bacteroides stercoris CC31F 0.54 HMPREF1181_RS02000 redox-regulated ATPase YchF 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bifidobacterium breve UCC2003 0.47 BBR_RS14650 redox-regulated ATPase YchF 0.24 BBR_RS14315 DNA polymerase I — —
Mycobacterium tuberculosis H37Rv 0.43 Rv1112 Probable GTP binding protein 0.18 Rv1629 Probable DNA polymerase I PolA — —

Not shown: 5 genomes with orthologs for CSW01_10875 only; 1 genomes with orthologs for CSW01_00560 only