Conservation of cofitness between CSW01_00635 and CSW01_00265 in Vibrio cholerae E7946 ATCC 55056

107 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00635 diaminopimelate decarboxylase 1.0 CSW01_00265 5-(carboxyamino)imidazole ribonucleotide mutase 0.49 7
Marinobacter adhaerens HP15 0.72 HP15_247 diaminopimelate decarboxylase 0.74 HP15_2349 phosphoribosylaminoimidazole carboxylase catalytic subunit
Shewanella sp. ANA-3 0.70 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.61 Shewana3_3155 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.60 SO3554 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit (NCBI ptt file) 0.86 74
Shewanella loihica PV-4 0.68 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.58 Shew_1248 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq)
Alteromonas macleodii MIT1002 0.67 MIT1002_00160 Diaminopimelate decarboxylase 0.53 MIT1002_00521 N5-carboxyaminoimidazole ribonucleotide mutase 0.83 21
Pseudomonas aeruginosa PA14 0.67 IKLFDK_27065 diaminopimelate decarboxylase 0.66 IKLFDK_26295 N5-carboxyaminoimidazole ribonucleotide mutase low > 101
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.66 Pf1N1B4_2027 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.66 PfGW456L13_746 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_0182 diaminopimelate decarboxylase 0.65 Psyr_5048 5-(carboxyamino)imidazole ribonucleotide mutase
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_0182 diaminopimelate decarboxylase 0.65 Psyr_5048 5-(carboxyamino)imidazole ribonucleotide mutase
Pseudomonas sp. DMC3 0.66 GFF367 Diaminopimelate decarboxylase 0.66 GFF486 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas sp. RS175 0.66 PFR28_04375 Diaminopimelate decarboxylase 0.66 PFR28_04496 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_12740 diaminopimelate decarboxylase 0.66 AO356_11080 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.56 Pf6N2E2_4082 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Pseudomonas putida KT2440 0.65 PP_5227 diaminopimelate decarboxylase 0.64 PP_5336 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_09035 diaminopimelate decarboxylase 0.66 AO353_09940 N5-carboxyaminoimidazole ribonucleotide mutase
Shewanella amazonensis SB2B 0.64 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.67 Sama_1064 phosphoribosylaminoimidazole carboxylase (RefSeq) low > 62
Pseudomonas fluorescens SBW25 0.64 PFLU_RS29265 diaminopimelate decarboxylase 0.66 PFLU_RS29805 5-(carboxyamino)imidazole ribonucleotide mutase
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS29265 diaminopimelate decarboxylase 0.66 PFLU_RS29805 5-(carboxyamino)imidazole ribonucleotide mutase
Pseudomonas stutzeri RCH2 0.64 Psest_3764 diaminopimelate decarboxylase 0.63 Psest_4069 phosphoribosylaminoimidazole carboxylase, PurE protein
Pseudomonas sp. S08-1 0.64 OH686_13800 diaminopimelate decarboxylase 0.68 OH686_13375 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas simiae WCS417 0.64 PS417_27580 diaminopimelate decarboxylase 0.66 PS417_28120 N5-carboxyaminoimidazole ribonucleotide mutase
Pseudomonas sp. SVBP6 0.63 COO64_RS01255 lysA diaminopimelate decarboxylase 0.64 COO64_RS01750 purE 5-(carboxyamino)imidazole ribonucleotide mutase
Pseudomonas sp. BP01 0.62 JOY50_RS22595 lysA diaminopimelate decarboxylase 0.64 JOY50_RS08820 purE 5-(carboxyamino)imidazole ribonucleotide mutase
Dechlorosoma suillum PS 0.61 Dsui_1182 diaminopimelate decarboxylase 0.49 Dsui_0092 phosphoribosylaminoimidazole carboxylase, PurE protein
Acinetobacter radioresistens SK82 0.61 MPMX26_02232 Diaminopimelate decarboxylase 0.58 MPMX26_03051 N5-carboxyaminoimidazole ribonucleotide mutase 0.84 13
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS28080 diaminopimelate decarboxylase 0.44 QEN71_RS02445 5-(carboxyamino)imidazole ribonucleotide mutase
Methylophilus sp. DMC18 0.58 GFF2209 Diaminopimelate decarboxylase 0.60 GFF1768 N5-carboxyaminoimidazole ribonucleotide mutase
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS06990 diaminopimelate decarboxylase 0.43 RALBFv3_RS12195 5-(carboxyamino)imidazole ribonucleotide mutase
Ralstonia solanacearum UW163 0.58 UW163_RS06625 diaminopimelate decarboxylase 0.43 UW163_RS01415 5-(carboxyamino)imidazole ribonucleotide mutase
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS17930 diaminopimelate decarboxylase 0.42 BPHYT_RS16250 N5-carboxyaminoimidazole ribonucleotide mutase low > 109
Ralstonia solanacearum PSI07 0.57 RPSI07_RS10250 diaminopimelate decarboxylase 0.43 RPSI07_RS21135 5-(carboxyamino)imidazole ribonucleotide mutase
Ralstonia solanacearum GMI1000 0.57 RS_RS14930 diaminopimelate decarboxylase 0.43 RS_RS02880 5-(carboxyamino)imidazole ribonucleotide mutase
Paraburkholderia graminis OAS925 0.57 ABIE53_003749 diaminopimelate decarboxylase 0.43 ABIE53_003424 5-(carboxyamino)imidazole ribonucleotide mutase
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS19050 diaminopimelate decarboxylase 0.41 RR42_RS03225 N5-carboxyaminoimidazole ribonucleotide mutase
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS02640 diaminopimelate decarboxylase 0.42 ABZR87_RS08085 5-(carboxyamino)imidazole ribonucleotide mutase
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_05606 diaminopimelate decarboxylase 0.43 H281DRAFT_04186 5-(carboxyamino)imidazole ribonucleotide mutase
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS00950 diaminopimelate decarboxylase 0.44 HSERO_RS03365 N5-carboxyaminoimidazole ribonucleotide mutase
Castellaniella sp019104865 MT123 0.56 ABCV34_RS12685 diaminopimelate decarboxylase 0.44 ABCV34_RS00560 5-(carboxyamino)imidazole ribonucleotide mutase
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_0353 diaminopimelate decarboxylase (RefSeq) 0.34 DvMF_1723 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) low > 51
Variovorax sp. SCN45 0.52 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.47 GFF5512 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18)
Variovorax sp. OAS795 0.52 ABID97_RS23305 diaminopimelate decarboxylase 0.45 ABID97_RS01705 5-(carboxyamino)imidazole ribonucleotide mutase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.42 GFF2771 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Desulfovibrio vulgaris Hildenborough JW710 0.51 DVU1647 lysA-1 diaminopimelate decarboxylase (TIGR) 0.31 DVU0487 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit (TIGR)
Phaeobacter inhibens DSM 17395 0.48 PGA1_c03470 diaminopimelate decarboxylase LysA 0.54 PGA1_c24860 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
Sinorhizobium meliloti 1021 0.48 SMc00723 diaminopimelate DAP decarboxylase 0.52 SMc04001 phosphoribosylaminoimidazole carboxylase catalytic subunit protein
Dinoroseobacter shibae DFL-12 0.47 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.46 Dshi_0681 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq)
Rhodopseudomonas palustris CGA009 0.47 TX73_024635 diaminopimelate decarboxylase 0.52 TX73_021640 5-(carboxyamino)imidazole ribonucleotide mutase
Agrobacterium fabrum C58 0.47 Atu3601 diaminopimelate decarboxylase 0.54 Atu3754 phosphoribosylaminoimidazole carboxylase catalytic subunit
Rhizobium sp. OAE497 0.47 ABIE40_RS17530 diaminopimelate decarboxylase 0.51 ABIE40_RS16065 5-(carboxyamino)imidazole ribonucleotide mutase
Xanthobacter sp. DMC5 0.47 GFF3837 Diaminopimelate decarboxylase 0.55 GFF3227 N5-carboxyaminoimidazole ribonucleotide mutase
Azospirillum sp. SherDot2 0.46 MPMX19_05819 Diaminopimelate decarboxylase 0.62 MPMX19_01417 N5-carboxyaminoimidazole ribonucleotide mutase
Azospirillum brasilense Sp245 0.45 AZOBR_RS16945 diaminopimelate decarboxylase 0.62 AZOBR_RS06145 N5-carboxyaminoimidazole ribonucleotide mutase
Caulobacter crescentus NA1000 Δfur 0.44 CCNA_02296 diaminopimelate decarboxylase 0.64 CCNA_03393 phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit
Magnetospirillum magneticum AMB-1 0.44 AMB_RS22725 diaminopimelate decarboxylase 0.65 AMB_RS11145 5-(carboxyamino)imidazole ribonucleotide mutase
Caulobacter crescentus NA1000 0.44 CCNA_02296 diaminopimelate decarboxylase 0.64 CCNA_03393 phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit
Rhodospirillum rubrum S1H 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.56 Rru_A1050 Phosphoribosylaminoimidazole carboxylase (NCBI)
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12545 diaminopimelate decarboxylase 0.64 A4249_RS08940 5-(carboxyamino)imidazole ribonucleotide mutase
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.58 Ga0059261_1427 phosphoribosylaminoimidazole carboxylase, PurE protein
Bosea sp. OAE506 0.38 ABIE41_RS08740 diaminopimelate decarboxylase 0.53 ABIE41_RS09240 5-(carboxyamino)imidazole ribonucleotide mutase
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS12130 diaminopimelate decarboxylase 0.58 ABZR86_RS09835 5-(carboxyamino)imidazole ribonucleotide mutase
Rhodanobacter denitrificans MT42 0.36 LRK55_RS11215 diaminopimelate decarboxylase 0.59 LRK55_RS13525 5-(carboxyamino)imidazole ribonucleotide mutase
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS11485 diaminopimelate decarboxylase 0.59 LRK54_RS13810 5-(carboxyamino)imidazole ribonucleotide mutase
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS17040 diaminopimelate decarboxylase 0.61 LRK53_RS14790 5-(carboxyamino)imidazole ribonucleotide mutase
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.57 OKGIIK_03045 purE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
Methanococcus maripaludis JJ 0.35 MMJJ_RS08170 diaminopimelate decarboxylase 0.37 MMJJ_RS03855 5-(carboxyamino)imidazole ribonucleotide mutase
Methanococcus maripaludis S2 0.35 MMP_RS06180 diaminopimelate decarboxylase 0.37 MMP_RS01520 5-(carboxyamino)imidazole ribonucleotide mutase
Lysobacter sp. OAE881 0.35 ABIE51_RS13675 diaminopimelate decarboxylase 0.47 ABIE51_RS15395 5-(carboxyamino)imidazole ribonucleotide mutase
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.41 HMPREF1058_RS12490 5-(carboxyamino)imidazole ribonucleotide mutase 0.75 15
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.41 HMPREF1078_RS05935 5-(carboxyamino)imidazole ribonucleotide mutase low > 61
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS19950 diaminopimelate decarboxylase 0.41 ABI39_RS04245 5-(carboxyamino)imidazole ribonucleotide mutase 0.55 63
Bacteroides ovatus ATCC 8483 0.31 BACOVA_00215 diaminopimelate decarboxylase 0.40 BACOVA_01613 phosphoribosylaminoimidazole carboxylase, catalytic subunit
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS10180 diaminopimelate decarboxylase 0.48 ABZR88_RS09285 5-(carboxyamino)imidazole ribonucleotide mutase
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_02390 diaminopimelate decarboxylase 0.51 CA264_12595 5-(carboxyamino)imidazole ribonucleotide mutase low > 74
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.41 HMPREF1181_RS00940 5-(carboxyamino)imidazole ribonucleotide mutase low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS09650 diaminopimelate decarboxylase 0.50 CA265_RS07740 5-(carboxyamino)imidazole ribonucleotide mutase
Cellulophaga baltica 18 0.24 M666_RS19040 diaminopimelate decarboxylase 0.44 M666_RS01275 5-(carboxyamino)imidazole ribonucleotide mutase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.52 Echvi_0885 phosphoribosylaminoimidazole carboxylase, PurE protein
Dickeya dadantii 3937 0.22 DDA3937_RS20740 type III PLP-dependent enzyme 0.51 DDA3937_RS15105 5-(carboxyamino)imidazole ribonucleotide mutase
Rahnella sp. WP5 0.22 EX31_RS02420 type III PLP-dependent enzyme 0.51 EX31_RS22625 5-(carboxyamino)imidazole ribonucleotide mutase low > 89
Dickeya dianthicola ME23 0.21 DZA65_RS00505 type III PLP-dependent enzyme 0.52 DZA65_RS15990 5-(carboxyamino)imidazole ribonucleotide mutase low > 75
Synechocystis sp000284455 PCC 6803 0.21 SGL_RS16710 diaminopimelate decarboxylase 0.50 SGL_RS16805 5-(carboxyamino)imidazole ribonucleotide mutase
Dickeya dianthicola 67-19 0.21 HGI48_RS00505 type III PLP-dependent enzyme 0.50 HGI48_RS15185 5-(carboxyamino)imidazole ribonucleotide mutase low > 71
Mycobacterium tuberculosis H37Rv 0.20 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) 0.50 Rv3275c Probable phosphoribosylaminoimidazole carboxylase catalytic subunit PurE (air carboxylase) (AIRC)
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.52 GFF4439 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) low > 78
Serratia liquefaciens MT49 0.19 IAI46_20520 diaminopimelate decarboxylase 0.52 IAI46_05375 5-(carboxyamino)imidazole ribonucleotide mutase low > 86
Enterobacter sp. TBS_079 0.19 MPMX20_03705 Diaminopimelate decarboxylase 0.51 MPMX20_01098 N5-carboxyaminoimidazole ribonucleotide mutase 0.68 61
Erwinia amylovora T8 0.19 OLJFJH_08880 diaminopimelate decarboxylase 0.50 OLJFJH_17630 5-(carboxyamino)imidazole ribonucleotide mutase low > 58
Kangiella aquimarina DSM 16071 0.19 B158DRAFT_0272 pyridoxal-dependent decarboxylase, exosortase A system-associated 0.58 B158DRAFT_0611 5-(carboxyamino)imidazole ribonucleotide mutase
Klebsiella michiganensis M5al 0.18 BWI76_RS23360 diaminopimelate decarboxylase 0.54 BWI76_RS07070 5-(carboxyamino)imidazole ribonucleotide mutase 0.74 49
Enterobacter asburiae PDN3 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase 0.51 EX28DRAFT_2459 phosphoribosylaminoimidazole carboxylase, PurE protein
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_00891 Diaminopimelate decarboxylase 0.52 OHPLBJKB_03158 N5-carboxyaminoimidazole ribonucleotide mutase low > 73
Escherichia coli BW25113 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.52 b0523 purE phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) 0.78 69
Escherichia coli ECOR38 0.18 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.52 HEPCGN_06475 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 87
Escherichia fergusonii Becca 0.18 EFB2_01045 Diaminopimelate decarboxylase 0.52 EFB2_03539 N5-carboxyaminoimidazole ribonucleotide mutase low > 86
Escherichia coli BL21 0.18 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.52 ECD_00473 N5-carboxyaminoimidazole ribonucleotide mutase low > 61
Escherichia coli Nissle 1917 0.18 ECOLIN_RS15930 diaminopimelate decarboxylase 0.52 ECOLIN_RS03030 5-(carboxyamino)imidazole ribonucleotide mutase
Escherichia coli ECRC98 0.18 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.52 JDDGAC_11485 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 86
Escherichia coli ECRC99 0.18 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.52 KEDOAH_20135 purE N5-carboxyaminoimidazole ribonucleotide mutase
Escherichia coli ECOR27 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.52 NOLOHH_00825 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 75
Escherichia coli ECRC100 0.18 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.52 OKFHMN_07835 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 80
Escherichia coli ECRC101 0.18 MCAODC_10470 lysA diaminopimelate decarboxylase 0.52 MCAODC_27055 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 87
Escherichia coli ECRC62 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase 0.52 BNILDI_22255 purE N5-carboxyaminoimidazole ribonucleotide mutase low > 75
Escherichia coli ECRC102 0.18 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.52 NIAGMN_05890 purE N5-carboxyaminoimidazole ribonucleotide mutase
Pantoea sp. MT58 0.17 IAI47_03860 diaminopimelate decarboxylase 0.50 IAI47_14350 5-(carboxyamino)imidazole ribonucleotide mutase 0.81 70
Erwinia tracheiphila SCR3 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase 0.52 LU632_RS15245 purE 5-(carboxyamino)imidazole ribonucleotide mutase low > 74
Pectobacterium carotovorum WPP14 0.16 HER17_RS03710 diaminopimelate decarboxylase 0.51 HER17_RS06475 5-(carboxyamino)imidazole ribonucleotide mutase 0.90 47

Not shown: 3 genomes with orthologs for CSW01_00635 only; 3 genomes with orthologs for CSW01_00265 only