Conservation of cofitness between CCNA_00270 and CCNA_02062 in Caulobacter crescentus NA1000

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Caulobacter crescentus NA1000 1.0 CCNA_00270 Recombination protein recR 1.0 CCNA_02062 DNA repair protein recN 0.87 5
Caulobacter crescentus NA1000 Δfur 1.00 CCNA_00270 Recombination protein recR 1.00 CCNA_02062 DNA repair protein recN low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.73 A4249_RS15115 recombination mediator RecR 0.47 A4249_RS02620 DNA repair protein RecN low > 48
Magnetospirillum magneticum AMB-1 0.66 AMB_RS20755 recombination protein RecR 0.39 AMB_RS19520 DNA repair protein RecN — —
Azospirillum sp. SherDot2 0.65 MPMX19_02195 Recombination protein RecR 0.41 MPMX19_01601 DNA repair protein RecN 0.49 85
Azospirillum brasilense Sp245 0.64 AZOBR_RS03880 recombinase RecR 0.39 AZOBR_RS12395 DNA repair protein RecN — —
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_0645 DNA replication and repair protein RecR 0.40 Ga0059261_1026 DNA repair protein RecN 0.30 21
Rhodospirillum rubrum S1H 0.63 Rru_A3471 RecR protein (NCBI) 0.38 Rru_A0940 DNA repair protein RecN (NCBI) — —
Rhodopseudomonas palustris CGA009 0.63 TX73_003195 recombination mediator RecR 0.37 TX73_018240 DNA repair protein RecN — —
Bosea sp. OAE506 0.62 ABIE41_RS04035 recombination mediator RecR 0.35 ABIE41_RS12645 DNA repair protein RecN — —
Sinorhizobium meliloti 1021 0.61 SMc02908 recombination protein RecR 0.36 SMc01877 DNA repair protein 0.65 7
Agrobacterium fabrum C58 0.60 Atu0093 Recombination protein 0.36 Atu2083 DNA repair protein RecN 0.48 11
Phaeobacter inhibens DSM 17395 0.59 PGA1_c30290 recombination protein RecR 0.34 PGA1_c09720 DNA repair protein RecN 0.50 10
Dinoroseobacter shibae DFL-12 0.56 Dshi_0648 recombination protein RecR (RefSeq) 0.31 Dshi_2413 DNA repair protein RecN (RefSeq) 0.48 11
Acinetobacter radioresistens SK82 0.46 MPMX26_01643 Recombination protein RecR 0.21 MPMX26_00239 DNA repair protein RecN 0.43 24
Dechlorosoma suillum PS 0.42 Dsui_1811 recombination protein RecR 0.24 Dsui_3072 DNA repair protein RecN 0.91 5
Fusobacterium nucleatum SB010 0.41 HUW76_08785 recombination protein RecR 0.20 HUW76_08055 DNA repair protein RecN low > 35
Pseudomonas stutzeri RCH2 0.41 Psest_2545 recombination protein RecR 0.25 Psest_0962 DNA repair protein RecN 0.59 7
Bifidobacterium breve UCC2003 0.40 BBR_RS10990 recombination protein RecR 0.15 BBR_RS14030 DNA repair protein RecN low > 34
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2480 DNA replication and repair protein RecR 0.27 B158DRAFT_0601 DNA replication and repair protein RecN 0.59 9
Pseudomonas sp. RS175 0.40 PFR28_01077 Recombination protein RecR 0.26 PFR28_00071 DNA repair protein RecN low > 88
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS04980 recombination protein RecR 0.18 CA265_RS14855 DNA repair protein RecN 0.78 8
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2325 Recombination protein RecR 0.27 Pf6N2E2_3370 DNA repair protein RecN 0.69 4
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1987 recombination protein RecR 0.21 Echvi_2067 DNA repair protein RecN 0.67 15
Pseudomonas simiae WCS417 0.39 PS417_20800 recombination protein RecR 0.26 PS417_24070 recombination and repair protein 0.44 6
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_02495 recombination protein RecR 0.26 AO356_07510 DNA repair protein RecN 0.74 2
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3864 Recombination protein RecR 0.27 Pf1N1B4_1178 DNA repair protein RecN 0.43 10
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS18355 recombinase RecR 0.25 HSERO_RS03060 DNA repair protein 0.38 46
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_00675 recombination protein RecR 0.26 AO353_05660 DNA repair protein RecN 0.43 14
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS22415 recombination protein RecR 0.26 PFLU_RS25910 DNA repair protein RecN 0.26 14
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1081 recombination protein recR (NCBI ptt file) 0.24 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.32 76
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4074 Recombination protein RecR 0.27 PfGW456L13_5106 DNA repair protein RecN 0.30 31
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS07615 recombination mediator RecR 0.22 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS16455 recombination protein RecR 0.23 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Marinobacter adhaerens HP15 0.39 HP15_1883 recombination protein RecR 0.29 HP15_3084 DNA repair protein RecN — —
Pseudomonas fluorescens SBW25 0.39 PFLU_RS22415 recombination protein RecR 0.26 PFLU_RS25910 DNA repair protein RecN low > 109
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS18560 recombination protein RecR 0.24 HMPREF1058_RS18225 DNA repair protein RecN low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS14870 recombination protein RecR 0.24 ABI39_RS14500 DNA repair protein RecN low > 72
Shewanella loihica PV-4 0.39 Shew_2233 recombination protein RecR (RefSeq) 0.24 Shew_1196 recombination and repair protein (RefSeq) 0.33 36
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_01105 recombination protein RecR 0.19 CA264_13235 DNA repair protein RecN 0.55 9
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_1369 recR recombination protein RecR 0.21 Synpcc7942_1779 recN DNA repair protein RecN — —
Pseudomonas sp. S08-1 0.38 OH686_02385 recombination protein RecR 0.28 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3396 DNA replication and repair protein RecR 0.26 Psyr_4197 DNA replication and repair protein RecN 0.40 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3396 DNA replication and repair protein RecR 0.26 Psyr_4197 DNA replication and repair protein RecN 0.46 18
Variovorax sp. SCN45 0.38 GFF1110 Recombination protein RecR 0.23 GFF2357 DNA repair protein RecN low > 127
Alteromonas macleodii MIT1002 0.38 MIT1002_02649 Recombination protein RecR 0.25 MIT1002_01443 Recombination protein N low > 70
Pseudomonas putida KT2440 0.38 PP_4267 Recombination protein RecR 0.26 PP_4729 factor used in recombination and DNA repair low > 96
Shewanella amazonensis SB2B 0.38 Sama_1312 recR recombination protein RecR (RefSeq) 0.25 Sama_1026 recombination and repair protein (RefSeq) 0.61 8
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS10695 recombination mediator RecR 0.21 ABZR88_RS06580 DNA repair protein RecN low > 71
Desulfovibrio vulgaris Miyazaki F 0.38 DvMF_2271 recombination protein RecR (RefSeq) 0.16 DvMF_0923 SMC domain protein (RefSeq) low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4253 Recombination protein RecR 0.25 GFF829 DNA repair protein RecN low > 90
Shewanella sp. ANA-3 0.38 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.24 Shewana3_1104 recombination and repair protein (RefSeq) 0.71 9
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS10810 recombination mediator RecR 0.25 ABZR87_RS01065 DNA repair protein RecN low > 80
Paraburkholderia graminis OAS925 0.37 ABIE53_002048 recombination protein RecR 0.25 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.33 110
Shewanella oneidensis MR-1 0.37 SO2015 recR recombination protein RecR (NCBI ptt file) 0.24 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.65 4
Mycobacterium tuberculosis H37Rv 0.37 Rv3715c Probable recombination protein RecR 0.18 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00834 DNA replication and repair protein RecR 0.24 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Lysobacter sp. OAE881 0.37 ABIE51_RS14010 recombination mediator RecR 0.26 ABIE51_RS11655 DNA repair protein RecN low > 62
Pectobacterium carotovorum WPP14 0.37 HER17_RS15695 recombination mediator RecR 0.24 HER17_RS17420 DNA repair protein RecN 0.66 11
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS22285 recombination mediator RecR 0.26 QEN71_RS26535 DNA repair protein RecN low > 153
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS09070 recombination protein RecR 0.24 BPHYT_RS03560 DNA repair protein low > 109
Rahnella sp. WP5 0.36 EX31_RS22525 recombination protein RecR 0.24 EX31_RS21760 DNA repair protein RecN low > 89
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS06235 recombination mediator RecR 0.24 ABZR86_RS05665 DNA repair protein RecN 0.49 18
Escherichia coli BL21 0.36 ECD_00423 gap repair protein 0.25 ECD_02504 recombination and repair protein low > 60
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS13270 recombination protein RecR 0.26 RR42_RS05910 DNA repair protein 0.62 8
Dickeya dadantii 3937 0.36 DDA3937_RS05790 recombination protein RecR 0.24 DDA3937_RS04325 DNA repair protein RecN low > 74
Escherichia coli ECRC99 0.36 KEDOAH_19810 recR recombination mediator RecR 0.26 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC98 0.36 JDDGAC_11805 recR recombination mediator RecR 0.26 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS02805 recombination mediator RecR 0.26 ECOLIN_RS14775 DNA repair protein RecN — —
Escherichia coli ECOR27 0.36 NOLOHH_01085 recR recombination mediator RecR 0.26 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03202 Recombination protein RecR 0.26 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC101 0.36 MCAODC_27380 recR recombination mediator RecR 0.26 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECOR38 0.36 HEPCGN_06770 recR recombination mediator RecR 0.26 HEPCGN_20265 recN DNA repair protein RecN low > 85
Escherichia coli BW25113 0.36 b0472 recR recombination protein RecR (NCBI) 0.26 b2616 recN recombination and repair protein (NCBI) 0.52 14
Escherichia fergusonii Becca 0.36 EFB2_03586 Recombination protein RecR 0.26 EFB2_01277 DNA repair protein RecN low > 86
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05655 recR recombination mediator RecR 0.23 OKGIIK_07340 recN DNA repair protein RecN low > 52
Escherichia coli ECRC62 0.36 BNILDI_22505 recR recombination mediator RecR 0.26 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.36 OKFHMN_08155 recR recombination mediator RecR 0.26 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC102 0.36 NIAGMN_06210 recR recombination mediator RecR 0.26 NIAGMN_18915 recN DNA repair protein RecN — —
Ralstonia solanacearum UW163 0.36 UW163_RS12640 recombination protein RecR 0.24 UW163_RS08210 DNA repair protein RecN — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS15170 recombination protein RecR 0.24 RALBFv3_RS05415 DNA repair protein RecN low > 76
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01020 recombination mediator RecR 0.23 LRK55_RS17815 DNA repair protein RecN low > 63
Klebsiella michiganensis M5al 0.36 BWI76_RS06830 recombination protein RecR 0.25 BWI76_RS21560 DNA repair protein RecN low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4390 Recombination protein RecR 0.26 GFF4162 DNA repair protein RecN 0.57 20
Enterobacter sp. TBS_079 0.35 MPMX20_01074 Recombination protein RecR 0.26 MPMX20_03486 DNA repair protein RecN low > 85
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU3200 recR recombination protein RecR (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Ralstonia solanacearum PSI07 0.35 RPSI07_RS18205 recombination protein RecR 0.24 RPSI07_RS11890 DNA repair protein RecN low > 81
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01250 recombination mediator RecR 0.23 LRK54_RS17960 DNA repair protein RecN low > 59
Ralstonia solanacearum GMI1000 0.35 RS_RS05980 recombination protein RecR 0.25 RS_RS13275 DNA repair protein RecN low > 80
Dickeya dianthicola 67-19 0.35 HGI48_RS05840 recombination protein RecR 0.25 HGI48_RS04320 DNA repair protein RecN — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2485 DNA replication and repair protein RecR 0.25 EX28DRAFT_2719 DNA repair protein RecN low > 76
Dickeya dianthicola ME23 0.35 DZA65_RS06165 recombination protein RecR 0.25 DZA65_RS04235 DNA repair protein RecN low > 75
Serratia liquefaciens MT49 0.35 IAI46_05240 recombination protein RecR 0.24 IAI46_19635 DNA repair protein RecN 0.49 33
Castellaniella sp019104865 MT123 0.35 ABCV34_RS15480 recombination mediator RecR 0.26 ABCV34_RS07470 DNA repair protein RecN low > 48
Erwinia tracheiphila SCR3 0.35 LU632_RS18105 recR recombination mediator RecR 0.24 LU632_RS16985 recN DNA repair protein RecN low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_05375 recombination protein RecR 0.25 CSW01_04395 DNA repair protein RecN 0.48 12
Pantoea sp. MT58 0.34 IAI47_14465 recombination protein RecR 0.26 IAI47_04810 DNA repair protein RecN low > 76
Acidovorax sp. GW101-3H11 0.34 Ac3H11_473 Recombination protein RecR 0.23 Ac3H11_3460 DNA repair protein RecN low > 79
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4012.1 Recombination protein RecR 0.27 Xcc-8004.3431.1 DNA repair protein RecN low > 74

Not shown: 2 genomes with orthologs for CCNA_00270 only; 1 genomes with orthologs for CCNA_02062 only